Wall clock time and date at job start Tue Mar 31 2020 18:43:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46897 * 111.00064 * 2 1 4 4 C 1.46904 * 110.99802 * 123.95726 * 2 1 3 5 5 C 1.50700 * 109.46968 * 66.04206 * 4 2 1 6 6 C 1.38375 * 119.92790 * 270.27088 * 5 4 2 7 7 C 1.38336 * 120.29293 * 180.28308 * 6 5 4 8 8 C 1.37984 * 120.14391 * 359.44861 * 7 6 5 9 9 C 1.39550 * 119.85051 * 0.27076 * 8 7 6 10 10 C 1.47848 * 120.14575 * 179.97438 * 9 8 7 11 11 O 1.21559 * 120.00078 * 139.96884 * 10 9 8 12 12 N 1.34774 * 119.99898 * 319.97883 * 10 9 8 13 13 C 1.46498 * 120.00039 * 4.75136 * 12 10 9 14 14 C 1.46503 * 119.99579 * 184.75873 * 12 10 9 15 15 C 1.52998 * 109.47471 * 89.99998 * 14 12 10 16 16 C 1.52994 * 109.47199 * 179.97438 * 15 14 12 17 17 N 1.46510 * 109.47178 * 179.97438 * 16 15 14 18 18 C 1.46499 * 120.00239 * 89.99713 * 17 16 15 19 19 C 1.36930 * 119.99602 * 269.99711 * 17 16 15 20 20 H 1.08005 * 120.00253 * 23.20452 * 19 17 16 21 21 C 1.38811 * 120.00337 * 203.20142 * 19 17 16 22 22 N 1.31628 * 119.99565 * 11.89912 * 21 19 17 23 23 Si 1.86798 * 120.00551 * 191.90298 * 21 19 17 24 24 H 1.48502 * 109.47053 * 89.99984 * 23 21 19 25 25 H 1.48504 * 109.47272 * 209.99504 * 23 21 19 26 26 H 1.48491 * 109.47155 * 329.99957 * 23 21 19 27 27 C 1.37933 * 119.92428 * 90.00388 * 5 4 2 28 28 H 1.09003 * 109.46754 * 296.05134 * 1 2 3 29 29 H 1.09003 * 109.46986 * 56.04578 * 1 2 3 30 30 H 1.08999 * 109.47221 * 176.04302 * 1 2 3 31 31 H 1.09002 * 109.46849 * 183.95717 * 3 2 1 32 32 H 1.08998 * 109.47463 * 303.95376 * 3 2 1 33 33 H 1.08996 * 109.47155 * 63.95651 * 3 2 1 34 34 H 1.08998 * 109.46677 * 306.03783 * 4 2 1 35 35 H 1.09002 * 109.46729 * 186.04204 * 4 2 1 36 36 H 1.08006 * 119.85591 * 0.02634 * 6 5 4 37 37 H 1.07997 * 119.92976 * 179.72573 * 7 6 5 38 38 H 1.07994 * 120.07380 * 180.26017 * 8 7 6 39 39 H 1.08999 * 109.47137 * 87.05831 * 13 12 10 40 40 H 1.09000 * 109.46825 * 207.05837 * 13 12 10 41 41 H 1.08996 * 109.47285 * 327.05725 * 13 12 10 42 42 H 1.09005 * 109.46634 * 209.99777 * 14 12 10 43 43 H 1.08995 * 109.47260 * 329.99415 * 14 12 10 44 44 H 1.09005 * 109.47011 * 299.99548 * 15 14 12 45 45 H 1.08995 * 109.47355 * 59.99475 * 15 14 12 46 46 H 1.09001 * 109.46811 * 299.99203 * 16 15 14 47 47 H 1.08995 * 109.47356 * 59.99524 * 16 15 14 48 48 H 1.08992 * 109.47165 * 89.05540 * 18 17 16 49 49 H 1.08998 * 109.46986 * 209.05990 * 18 17 16 50 50 H 1.09005 * 109.46704 * 329.06195 * 18 17 16 51 51 H 0.96997 * 120.00237 * 180.02562 * 22 21 19 52 52 H 1.08004 * 120.07595 * 0.02562 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7661 1.1376 5 6 1.6368 -2.2205 0.9728 6 6 0.4467 -2.7010 1.4901 7 6 0.1127 -4.0359 1.3483 8 6 0.9602 -4.8949 0.6792 9 6 2.1592 -4.4156 0.1500 10 6 3.0724 -5.3304 -0.5676 11 8 3.6453 -4.9535 -1.5713 12 7 3.2696 -6.5823 -0.1091 13 6 2.5016 -7.0715 1.0385 14 6 4.2522 -7.4538 -0.7582 15 6 5.6169 -7.2692 -0.0915 16 6 6.6428 -8.1798 -0.7690 17 7 7.9497 -8.0026 -0.1310 18 6 8.3265 -8.8384 1.0116 19 6 8.8190 -7.0556 -0.6028 20 1 8.4456 -6.2106 -1.1623 21 6 10.1803 -7.1816 -0.3621 22 7 10.6636 -8.3122 0.1079 23 14 11.3263 -5.7469 -0.7049 24 1 11.4415 -4.9036 0.5121 25 1 12.6678 -6.2630 -1.0781 26 1 10.7807 -4.9333 -1.8209 27 6 2.4930 -3.0685 0.3017 28 1 -0.3633 0.4513 0.9233 29 1 -0.3633 0.5740 -0.8525 30 1 -0.3633 -1.0252 -0.0709 31 1 3.0828 1.3431 -0.0709 32 1 1.5899 1.9163 -0.8524 33 1 1.7045 1.8723 0.9233 34 1 1.5612 -0.3872 2.0627 35 1 3.0797 -0.6612 1.1756 36 1 -0.2224 -2.0317 2.0106 37 1 -0.8155 -4.4056 1.7582 38 1 0.6964 -5.9360 0.5655 39 1 1.5585 -7.4936 0.6912 40 1 3.0742 -7.8398 1.5580 41 1 2.3005 -6.2450 1.7201 42 1 3.9373 -8.4927 -0.6598 43 1 4.3258 -7.1949 -1.8144 44 1 5.9317 -6.2303 -0.1899 45 1 5.5433 -7.5280 0.9647 46 1 6.3278 -9.2186 -0.6702 47 1 6.7165 -7.9214 -1.8253 48 1 8.8117 -9.7462 0.6534 49 1 9.0142 -8.2878 1.6534 50 1 7.4336 -9.1030 1.5782 51 1 11.6147 -8.4002 0.2766 52 1 3.4197 -2.6914 -0.1050 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700195307.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:43:25 Heat of formation + Delta-G solvation = 8.435974 kcal Electronic energy + Delta-G solvation = -28525.241274 eV Core-core repulsion = 24718.131019 eV Total energy + Delta-G solvation = -3807.110255 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.52293 -39.92828 -38.02472 -37.81299 -36.78612 -34.28522 -32.99026 -32.29053 -31.54144 -28.51159 -28.35430 -27.94146 -27.55385 -27.08403 -24.79644 -23.61431 -23.26598 -22.13104 -21.90498 -20.37611 -18.77479 -18.14457 -17.66409 -17.24171 -16.89692 -16.65991 -16.40872 -16.25987 -16.05194 -15.79401 -15.41960 -15.37544 -14.90856 -14.66455 -14.52303 -14.35141 -14.19927 -13.78767 -13.58308 -13.32573 -13.26137 -13.19491 -12.97277 -12.89877 -12.78337 -12.68183 -12.58199 -12.51960 -12.49144 -12.38669 -12.25375 -12.12049 -11.91081 -11.85000 -11.44565 -10.97808 -10.66104 -9.95823 -9.79471 -9.69590 -9.27847 -8.77190 -7.87915 -5.35096 -0.03897 0.36303 1.41649 1.42358 1.52384 1.64220 2.01821 2.47749 2.68826 3.22005 3.25546 3.45430 3.68305 3.71043 3.93317 4.03781 4.06808 4.15958 4.26583 4.28968 4.32968 4.39235 4.43563 4.49818 4.53866 4.57607 4.61950 4.66437 4.72602 4.73518 4.74291 4.85806 4.88812 4.91270 4.93038 4.99397 5.02387 5.03380 5.24001 5.24938 5.36410 5.40217 5.47987 5.52866 5.56287 5.58403 5.68058 5.91778 6.02996 6.08138 6.31247 6.33645 7.07870 7.13300 7.85916 8.27653 9.16294 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.011821 B = 0.002553 C = 0.002198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2368.179771 B =10963.099222 C =12733.201750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.567 5.567 3 C 0.025 3.975 4 C 0.095 3.905 5 C -0.090 4.090 6 C -0.086 4.086 7 C -0.117 4.117 8 C -0.088 4.088 9 C -0.145 4.145 10 C 0.546 3.454 11 O -0.588 6.588 12 N -0.606 5.606 13 C 0.065 3.935 14 C 0.123 3.877 15 C -0.129 4.129 16 C 0.153 3.847 17 N -0.623 5.623 18 C 0.178 3.822 19 C -0.263 4.263 20 H 0.057 0.943 21 C -0.052 4.052 22 N -0.937 5.937 23 Si 0.967 3.033 24 H -0.284 1.284 25 H -0.287 1.287 26 H -0.275 1.275 27 C -0.070 4.070 28 H 0.040 0.960 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.063 0.937 32 H 0.075 0.925 33 H 0.037 0.963 34 H 0.064 0.936 35 H 0.074 0.926 36 H 0.151 0.849 37 H 0.167 0.833 38 H 0.157 0.843 39 H 0.090 0.910 40 H 0.085 0.915 41 H 0.083 0.917 42 H 0.113 0.887 43 H 0.062 0.938 44 H 0.020 0.980 45 H 0.061 0.939 46 H 0.064 0.936 47 H 0.034 0.966 48 H 0.000 1.000 49 H 0.022 0.978 50 H 0.031 0.969 51 H 0.250 0.750 52 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.889 11.054 7.615 32.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.292 5.292 3 C -0.123 4.123 4 C -0.032 4.032 5 C -0.090 4.090 6 C -0.105 4.105 7 C -0.135 4.135 8 C -0.106 4.106 9 C -0.148 4.148 10 C 0.336 3.664 11 O -0.469 6.469 12 N -0.337 5.337 13 C -0.076 4.076 14 C 0.000 4.000 15 C -0.170 4.170 16 C 0.026 3.974 17 N -0.347 5.347 18 C 0.034 3.966 19 C -0.393 4.393 20 H 0.075 0.925 21 C -0.247 4.247 22 N -0.584 5.584 23 Si 0.795 3.205 24 H -0.211 1.211 25 H -0.214 1.214 26 H -0.200 1.200 27 C -0.090 4.090 28 H 0.059 0.941 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.082 0.918 32 H 0.094 0.906 33 H 0.056 0.944 34 H 0.082 0.918 35 H 0.093 0.907 36 H 0.168 0.832 37 H 0.184 0.816 38 H 0.174 0.826 39 H 0.108 0.892 40 H 0.104 0.896 41 H 0.101 0.899 42 H 0.131 0.869 43 H 0.081 0.919 44 H 0.039 0.961 45 H 0.079 0.921 46 H 0.082 0.918 47 H 0.052 0.948 48 H 0.018 0.982 49 H 0.041 0.959 50 H 0.050 0.950 51 H 0.059 0.941 52 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -29.263 10.944 6.706 31.954 hybrid contribution 1.355 1.113 0.214 1.767 sum -27.908 12.058 6.920 31.179 Atomic orbital electron populations 1.22484 0.86240 1.02643 1.01243 1.61927 1.09395 1.14658 1.43191 1.22403 1.00728 0.87779 1.01364 1.21051 1.00501 0.89218 0.92468 1.19745 0.95270 0.95234 0.98756 1.21551 0.94921 0.96527 0.97496 1.21480 1.00480 0.92790 0.98717 1.21840 0.91817 1.01830 0.95132 1.19814 0.97581 0.93969 1.03441 1.19005 0.81275 0.82342 0.83816 1.90772 1.51969 1.76563 1.27587 1.47913 1.39907 1.12757 1.33153 1.22442 0.96678 1.01234 0.87292 1.21452 0.86805 0.94927 0.96781 1.22285 0.95066 0.99322 1.00374 1.20792 0.84408 0.97340 0.94851 1.44166 1.14717 1.41665 1.34139 1.20524 0.94955 0.93114 0.88045 1.19414 0.88095 1.00631 1.31173 0.92545 1.25756 0.98196 0.99181 1.01589 1.70215 1.12360 1.24796 1.51026 0.85275 0.78239 0.79063 0.77961 1.21066 1.21354 1.20007 1.20972 0.99486 0.91982 0.96544 0.94148 0.91096 0.91305 0.91775 0.90614 0.94410 0.91789 0.90741 0.83182 0.81581 0.82592 0.89212 0.89636 0.89867 0.86855 0.91941 0.96138 0.92059 0.91820 0.94786 0.98193 0.95893 0.95022 0.94079 0.88226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.12 127.69 1.16 1.45 16 2 N -0.57 -9.98 5.01 -953.46 -4.78 -14.75 16 3 C 0.02 0.35 9.57 127.69 1.22 1.57 16 4 C 0.09 1.61 5.11 85.56 0.44 2.04 16 5 C -0.09 -1.71 4.88 -19.90 -0.10 -1.81 16 6 C -0.09 -1.12 7.94 22.33 0.18 -0.94 16 7 C -0.12 -1.32 10.03 22.23 0.22 -1.10 16 8 C -0.09 -1.40 7.55 22.53 0.17 -1.23 16 9 C -0.15 -3.68 5.21 -20.09 -0.10 -3.79 16 10 C 0.55 17.73 7.34 86.79 0.64 18.37 16 11 O -0.59 -25.28 16.48 -3.90 -0.06 -25.35 16 12 N -0.61 -16.05 2.87 -850.20 -2.44 -18.50 16 13 C 0.06 1.00 8.89 127.77 1.14 2.14 16 14 C 0.12 3.62 5.43 86.38 0.47 4.09 16 15 C -0.13 -4.83 5.86 30.59 0.18 -4.65 16 16 C 0.15 6.53 5.67 86.38 0.49 7.02 16 17 N -0.62 -33.41 2.92 -726.94 -2.12 -35.53 16 18 C 0.18 9.14 8.98 127.77 1.15 10.29 16 19 C -0.26 -15.64 9.66 84.03 0.81 -14.83 16 20 H 0.06 3.41 7.86 -2.91 -0.02 3.39 16 21 C -0.05 -3.11 5.08 84.86 0.43 -2.68 16 22 N -0.94 -57.64 10.70 21.65 0.23 -57.41 16 23 Si 0.97 47.98 29.57 68.60 2.03 50.01 16 24 H -0.28 -13.79 7.11 99.48 0.71 -13.09 16 25 H -0.29 -14.00 7.11 99.48 0.71 -13.30 16 26 H -0.27 -13.35 7.11 99.48 0.71 -12.65 16 27 C -0.07 -1.85 9.29 22.53 0.21 -1.64 16 28 H 0.04 0.39 8.14 -2.39 -0.02 0.37 16 29 H 0.07 0.86 8.12 -2.39 -0.02 0.84 16 30 H 0.07 0.94 6.15 -2.39 -0.01 0.92 16 31 H 0.06 0.96 8.12 -2.39 -0.02 0.94 16 32 H 0.08 0.95 8.12 -2.39 -0.02 0.93 16 33 H 0.04 0.43 8.14 -2.39 -0.02 0.41 16 34 H 0.06 0.82 8.07 -2.39 -0.02 0.80 16 35 H 0.07 1.40 8.00 -2.39 -0.02 1.38 16 36 H 0.15 1.09 8.01 -2.91 -0.02 1.06 16 37 H 0.17 0.65 8.06 -2.91 -0.02 0.63 16 38 H 0.16 1.70 5.44 -2.91 -0.02 1.69 16 39 H 0.09 0.84 7.00 -2.39 -0.02 0.82 16 40 H 0.08 1.19 8.05 -2.39 -0.02 1.17 16 41 H 0.08 1.20 5.74 -2.39 -0.01 1.18 16 42 H 0.11 2.46 8.07 -2.38 -0.02 2.44 16 43 H 0.06 2.12 7.36 -2.39 -0.02 2.11 16 44 H 0.02 0.91 8.14 -2.38 -0.02 0.90 16 45 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 46 H 0.06 2.36 8.07 -2.39 -0.02 2.34 16 47 H 0.03 1.53 8.04 -2.39 -0.02 1.51 16 48 H 0.00 -0.01 7.69 -2.39 -0.02 -0.03 16 49 H 0.02 1.27 6.91 -2.39 -0.02 1.25 16 50 H 0.03 1.34 8.08 -2.38 -0.02 1.33 16 51 H 0.25 14.81 8.31 -92.71 -0.77 14.04 16 52 H 0.10 3.15 8.06 -2.91 -0.02 3.12 16 Total: -1.00 -80.99 414.37 2.43 -78.56 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: 0.87 Total: 8.65 kcal Atomic # 6 Polarization: 5.61 SS G_CDS: 8.70 Total: 14.31 kcal Atomic # 7 Polarization: -117.08 SS G_CDS: -9.11 Total: -126.19 kcal Atomic # 8 Polarization: -25.28 SS G_CDS: -0.06 Total: -25.35 kcal Atomic # 14 Polarization: 47.98 SS G_CDS: 2.03 Total: 50.01 kcal Total: -80.99 2.43 -78.56 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700195307.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.999 kcal (2) G-P(sol) polarization free energy of solvation -80.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.563 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds