Wall clock time and date at job start Tue Mar 31 2020 17:35:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.46511 * 2 1 4 4 N 1.46498 * 109.47010 * 240.00087 * 2 1 3 5 5 C 1.36940 * 120.00113 * 84.99927 * 4 2 1 6 6 H 1.07999 * 119.99475 * 0.02562 * 5 4 2 7 7 C 1.38811 * 120.00012 * 179.97438 * 5 4 2 8 8 N 1.31621 * 119.99957 * 0.27138 * 7 5 4 9 9 Si 1.86803 * 119.99938 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.46878 * 59.99509 * 9 7 5 11 11 H 1.48491 * 109.47031 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47119 * 300.00049 * 9 7 5 13 13 C 1.52999 * 109.47129 * 120.00021 * 2 1 3 14 14 H 1.08996 * 109.47099 * 185.00135 * 13 2 1 15 15 C 1.52997 * 109.47195 * 65.00316 * 13 2 1 16 16 N 1.46505 * 109.47221 * 304.99988 * 13 2 1 17 17 C 1.34772 * 119.99936 * 205.00071 * 16 13 2 18 18 O 1.21553 * 120.00236 * 0.02562 * 17 16 13 19 19 C 1.47849 * 119.99845 * 180.02562 * 17 16 13 20 20 C 1.39597 * 120.14345 * 354.42037 * 19 17 16 21 21 C 1.37938 * 119.85571 * 179.79040 * 20 19 17 22 22 C 1.38388 * 120.13725 * 0.49151 * 21 20 19 23 23 C 1.38332 * 120.29778 * 359.74522 * 22 21 20 24 24 C 1.37980 * 120.14108 * 0.02562 * 23 22 21 25 25 C 1.50701 * 120.07005 * 180.02562 * 24 23 22 26 26 C 1.53002 * 109.47218 * 261.55436 * 25 24 23 27 27 N 1.46894 * 109.47276 * 180.02562 * 26 25 24 28 28 C 1.46899 * 111.00093 * 170.00005 * 27 26 25 29 29 C 1.46905 * 111.00083 * 293.95496 * 27 26 25 30 30 H 1.09007 * 109.46947 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47379 * 299.99335 * 1 2 3 32 32 H 1.08992 * 109.47226 * 59.99971 * 1 2 3 33 33 H 0.97000 * 119.99869 * 264.99694 * 4 2 1 34 34 H 0.96998 * 120.00191 * 359.73223 * 8 7 5 35 35 H 1.08992 * 109.47500 * 59.99760 * 15 13 2 36 36 H 1.09001 * 109.47181 * 180.02562 * 15 13 2 37 37 H 1.09006 * 109.47222 * 299.99444 * 15 13 2 38 38 H 0.97009 * 119.99534 * 25.00154 * 16 13 2 39 39 H 1.08005 * 120.07272 * 0.02562 * 20 19 17 40 40 H 1.07993 * 119.93157 * 180.23289 * 21 20 19 41 41 H 1.08001 * 119.85056 * 179.76257 * 22 21 20 42 42 H 1.08000 * 119.93184 * 180.02562 * 23 22 21 43 43 H 1.08998 * 109.47283 * 21.55655 * 25 24 23 44 44 H 1.09008 * 109.47355 * 141.55677 * 25 24 23 45 45 H 1.08998 * 109.47172 * 300.00286 * 26 25 24 46 46 H 1.08999 * 109.46824 * 60.00105 * 26 25 24 47 47 H 1.09005 * 109.46746 * 60.00002 * 28 27 26 48 48 H 1.09007 * 109.47257 * 179.97438 * 28 27 26 49 49 H 1.08997 * 109.47379 * 299.99749 * 28 27 26 50 50 H 1.09000 * 109.47287 * 59.99990 * 29 27 26 51 51 H 1.09004 * 109.47114 * 180.02562 * 29 27 26 52 52 H 1.09004 * 109.46971 * 300.00026 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1491 -0.0075 -2.3758 6 1 1.8926 1.0405 -2.4241 7 6 2.6123 -0.6617 -3.5090 8 7 2.9207 -1.9399 -3.4511 9 14 2.7913 0.2704 -5.1180 10 1 3.7464 1.3929 -4.9361 11 1 3.3013 -0.6477 -6.1677 12 1 1.4691 0.8072 -5.5289 13 6 2.0400 -0.7212 1.2492 14 1 3.1263 -0.6443 1.2951 15 6 1.6354 -2.1955 1.1879 16 7 1.4559 -0.1036 2.4424 17 6 2.0913 -0.1938 3.6275 18 8 3.1493 -0.7871 3.7064 19 6 1.5015 0.4290 4.8318 20 6 0.3486 1.2089 4.7245 21 6 -0.1991 1.7835 5.8525 22 6 0.3976 1.5967 7.0870 23 6 1.5430 0.8291 7.1996 24 6 2.0982 0.2449 6.0797 25 6 3.3457 -0.5915 6.2043 26 6 4.5652 0.2524 5.8279 27 7 5.7811 -0.5630 5.9487 28 6 6.9403 0.1319 5.3733 29 6 6.0303 -0.9325 7.3485 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5137 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 2.2491 -1.6317 -1.1526 34 1 2.8281 -2.4239 -2.6156 35 1 2.0699 -2.6550 0.3003 36 1 1.9983 -2.7092 2.0781 37 1 0.5490 -2.2725 1.1421 38 1 0.6117 0.3702 2.3794 39 1 -0.1156 1.3588 3.7609 40 1 -1.0930 2.3840 5.7714 41 1 -0.0330 2.0520 7.9667 42 1 2.0035 0.6869 8.1661 43 1 3.4482 -0.9402 7.2318 44 1 3.2766 -1.4490 5.5348 45 1 4.4626 0.6011 4.8003 46 1 4.6343 1.1098 6.4974 47 1 7.0973 1.0736 5.8994 48 1 7.8270 -0.4937 5.4764 49 1 6.7570 0.3317 4.3176 50 1 5.1853 -1.5066 7.7287 51 1 6.9364 -1.5354 7.4094 52 1 6.1543 -0.0294 7.9461 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700410924.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:35:12 Heat of formation + Delta-G solvation = -10.543761 kcal Electronic energy + Delta-G solvation = -29411.726621 eV Core-core repulsion = 25603.793343 eV Total energy + Delta-G solvation = -3807.933278 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.60882 -39.78098 -38.45905 -38.31183 -35.94348 -34.17090 -33.59417 -32.24493 -30.58003 -29.77821 -29.75240 -28.49529 -26.14933 -25.89026 -25.17693 -24.31802 -22.77382 -21.93480 -21.42282 -20.73480 -19.54105 -18.90401 -17.28747 -17.12545 -16.71623 -16.62803 -16.26654 -16.11265 -15.87423 -15.76860 -15.70562 -15.51926 -15.36747 -14.79571 -14.55013 -14.14346 -13.92008 -13.86733 -13.75816 -13.44623 -13.30722 -13.24354 -13.12265 -12.79583 -12.75005 -12.64661 -12.54757 -12.44048 -12.32992 -12.04262 -11.95393 -11.86473 -11.81103 -11.69508 -11.27113 -10.95079 -10.58327 -10.16838 -9.89101 -9.69407 -9.26985 -9.15094 -8.38139 -5.32740 -0.10431 0.39159 1.58515 1.68675 1.84792 1.91656 2.08923 2.72939 2.83145 3.05940 3.40824 3.64794 3.74815 3.79982 3.88072 3.90720 3.97955 4.05141 4.20972 4.21603 4.22171 4.30039 4.43734 4.45645 4.48674 4.50878 4.58930 4.60452 4.65874 4.68693 4.76645 4.82864 4.86253 4.92867 4.93696 4.95138 4.99035 5.07487 5.10959 5.15721 5.23393 5.37666 5.50195 5.50679 5.52572 5.61608 5.63160 5.96505 6.07988 6.15545 6.49863 6.55054 7.09113 7.25521 7.99415 8.10279 9.13511 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.012262 B = 0.002887 C = 0.002488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2282.902046 B = 9695.824554 C =11252.089365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.171 3.829 3 H 0.043 0.957 4 N -0.745 5.745 5 C -0.328 4.328 6 H 0.068 0.932 7 C -0.105 4.105 8 N -0.976 5.976 9 Si 1.127 2.873 10 H -0.280 1.280 11 H -0.295 1.295 12 H -0.275 1.275 13 C 0.154 3.846 14 H 0.055 0.945 15 C -0.148 4.148 16 N -0.706 5.706 17 C 0.543 3.457 18 O -0.551 6.551 19 C -0.152 4.152 20 C -0.089 4.089 21 C -0.130 4.130 22 C -0.086 4.086 23 C -0.130 4.130 24 C -0.039 4.039 25 C -0.074 4.074 26 C 0.085 3.915 27 N -0.565 5.565 28 C 0.029 3.971 29 C 0.023 3.977 30 H 0.051 0.949 31 H 0.077 0.923 32 H 0.042 0.958 33 H 0.363 0.637 34 H 0.243 0.757 35 H 0.048 0.952 36 H 0.053 0.947 37 H 0.072 0.928 38 H 0.408 0.592 39 H 0.140 0.860 40 H 0.157 0.843 41 H 0.158 0.842 42 H 0.147 0.853 43 H 0.079 0.921 44 H 0.077 0.923 45 H 0.052 0.948 46 H 0.031 0.969 47 H 0.031 0.969 48 H 0.078 0.922 49 H 0.050 0.950 50 H 0.073 0.927 51 H 0.073 0.927 52 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.510 8.839 27.657 29.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.063 3.937 3 H 0.061 0.939 4 N -0.390 5.390 5 C -0.460 4.460 6 H 0.086 0.914 7 C -0.296 4.296 8 N -0.624 5.624 9 Si 0.952 3.048 10 H -0.206 1.206 11 H -0.221 1.221 12 H -0.201 1.201 13 C 0.048 3.952 14 H 0.074 0.926 15 C -0.206 4.206 16 N -0.360 5.360 17 C 0.332 3.668 18 O -0.430 6.430 19 C -0.155 4.155 20 C -0.107 4.107 21 C -0.148 4.148 22 C -0.104 4.104 23 C -0.148 4.148 24 C -0.041 4.041 25 C -0.112 4.112 26 C -0.043 4.043 27 N -0.290 5.290 28 C -0.119 4.119 29 C -0.125 4.125 30 H 0.070 0.930 31 H 0.095 0.905 32 H 0.061 0.939 33 H 0.197 0.803 34 H 0.053 0.947 35 H 0.067 0.933 36 H 0.072 0.928 37 H 0.091 0.909 38 H 0.248 0.752 39 H 0.158 0.842 40 H 0.174 0.826 41 H 0.176 0.824 42 H 0.164 0.836 43 H 0.097 0.903 44 H 0.095 0.905 45 H 0.070 0.930 46 H 0.049 0.951 47 H 0.050 0.950 48 H 0.097 0.903 49 H 0.069 0.931 50 H 0.092 0.908 51 H 0.092 0.908 52 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -4.429 8.105 25.817 27.419 hybrid contribution -0.290 0.406 1.479 1.561 sum -4.719 8.511 27.295 28.978 Atomic orbital electron populations 1.22339 0.96502 1.01621 1.01177 1.20449 0.93879 0.94618 0.84802 0.93919 1.42653 1.79848 1.09832 1.06645 1.20363 1.40213 0.95390 0.89993 0.91384 1.27179 0.99615 0.97596 1.05220 1.70990 1.53953 1.09491 1.27975 0.82632 0.76957 0.73445 0.71742 1.20586 1.22096 1.20132 1.20823 0.97250 0.92976 0.84170 0.92633 1.22016 1.02218 0.95425 1.00965 1.45937 1.26165 1.56714 1.07214 1.18823 0.84324 0.79819 0.83791 1.90797 1.23110 1.43838 1.85292 1.19802 0.99166 1.03784 0.92796 1.21564 0.93554 0.95000 1.00611 1.21476 1.01204 1.00219 0.91867 1.21755 0.94141 0.95709 0.98833 1.21310 0.97163 0.98192 0.98138 1.20058 0.95688 0.96045 0.92291 1.20645 0.90282 0.98262 1.01966 1.21801 0.89086 0.93363 1.00070 1.61853 1.03554 1.44299 1.19251 1.22326 0.93251 0.97126 0.99231 1.22477 1.02715 1.00208 0.87070 0.92966 0.90475 0.93851 0.80326 0.94650 0.93274 0.92839 0.90936 0.75236 0.84246 0.82550 0.82432 0.83576 0.90298 0.90479 0.92955 0.95135 0.94999 0.90327 0.93146 0.90784 0.90808 0.94983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.07 9.01 71.98 0.65 -4.42 16 2 C 0.17 6.71 2.93 44.99 0.13 6.84 16 3 H 0.04 1.75 8.08 -2.39 -0.02 1.73 16 4 N -0.75 -37.56 5.03 -322.94 -1.62 -39.18 16 5 C -0.33 -18.44 9.93 84.03 0.83 -17.61 16 6 H 0.07 3.70 7.83 -2.91 -0.02 3.68 16 7 C -0.11 -6.15 5.50 84.86 0.47 -5.68 16 8 N -0.98 -61.98 13.70 21.65 0.30 -61.69 16 9 Si 1.13 52.36 29.92 68.60 2.05 54.41 16 10 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 11 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 12 H -0.28 -11.76 7.11 99.48 0.71 -11.06 16 13 C 0.15 5.46 2.62 44.99 0.12 5.58 16 14 H 0.06 2.35 7.58 -2.39 -0.02 2.33 16 15 C -0.15 -5.15 9.00 71.98 0.65 -4.51 16 16 N -0.71 -19.79 4.94 -445.41 -2.20 -21.99 16 17 C 0.54 16.26 7.60 86.79 0.66 16.92 16 18 O -0.55 -20.24 11.24 -3.88 -0.04 -20.28 16 19 C -0.15 -3.57 5.87 -20.09 -0.12 -3.68 16 20 C -0.09 -1.51 9.53 22.53 0.21 -1.29 16 21 C -0.13 -1.60 10.03 22.23 0.22 -1.37 16 22 C -0.09 -0.99 10.04 22.33 0.22 -0.76 16 23 C -0.13 -1.96 9.66 22.23 0.21 -1.74 16 24 C -0.04 -0.85 5.17 -19.61 -0.10 -0.95 16 25 C -0.07 -1.78 4.53 29.85 0.14 -1.65 16 26 C 0.08 2.17 4.46 86.31 0.39 2.56 16 27 N -0.57 -14.28 5.02 -948.83 -4.76 -19.04 16 28 C 0.03 0.66 9.57 127.69 1.22 1.88 16 29 C 0.02 0.42 9.32 127.69 1.19 1.61 16 30 H 0.05 1.71 6.57 -2.38 -0.02 1.69 16 31 H 0.08 1.79 6.29 -2.39 -0.02 1.77 16 32 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.36 19.19 4.60 -92.71 -0.43 18.76 16 34 H 0.24 15.44 6.77 -92.71 -0.63 14.81 16 35 H 0.05 1.92 6.29 -2.39 -0.02 1.91 16 36 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 37 H 0.07 2.26 6.57 -2.38 -0.02 2.25 16 38 H 0.41 8.97 4.64 -92.70 -0.43 8.54 16 39 H 0.14 1.86 6.45 -2.91 -0.02 1.84 16 40 H 0.16 1.01 8.06 -2.91 -0.02 0.99 16 41 H 0.16 0.79 8.06 -2.91 -0.02 0.77 16 42 H 0.15 1.53 8.05 -2.91 -0.02 1.51 16 43 H 0.08 1.52 6.43 -2.39 -0.02 1.51 16 44 H 0.08 2.40 5.97 -2.38 -0.01 2.38 16 45 H 0.05 1.68 6.48 -2.39 -0.02 1.66 16 46 H 0.03 0.70 8.12 -2.39 -0.02 0.68 16 47 H 0.03 0.64 8.14 -2.38 -0.02 0.62 16 48 H 0.08 1.56 8.12 -2.38 -0.02 1.55 16 49 H 0.05 1.33 8.12 -2.39 -0.02 1.31 16 50 H 0.07 1.25 6.47 -2.39 -0.02 1.24 16 51 H 0.07 1.21 8.12 -2.39 -0.02 1.19 16 52 H 0.03 0.51 8.14 -2.39 -0.02 0.49 16 Total: -1.00 -74.37 402.16 1.03 -73.34 By element: Atomic # 1 Polarization: 42.47 SS G_CDS: 0.21 Total: 42.68 kcal Atomic # 6 Polarization: -15.36 SS G_CDS: 7.10 Total: -8.26 kcal Atomic # 7 Polarization: -133.61 SS G_CDS: -8.29 Total: -141.90 kcal Atomic # 8 Polarization: -20.24 SS G_CDS: -0.04 Total: -20.28 kcal Atomic # 14 Polarization: 52.36 SS G_CDS: 2.05 Total: 54.41 kcal Total: -74.37 1.03 -73.34 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700410924.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.799 kcal (2) G-P(sol) polarization free energy of solvation -74.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds