Wall clock time and date at job start Tue Mar 31 2020 17:35:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.46855 * 2 1 4 4 N 1.46496 * 109.47077 * 119.99899 * 2 1 3 5 5 C 1.34775 * 120.00206 * 274.99731 * 4 2 1 6 6 O 1.21548 * 119.99672 * 0.02562 * 5 4 2 7 7 C 1.47846 * 119.99822 * 179.97438 * 5 4 2 8 8 C 1.39594 * 120.14719 * 354.39519 * 7 5 4 9 9 C 1.37941 * 119.85082 * 179.78739 * 8 7 5 10 10 C 1.38380 * 120.14557 * 0.49054 * 9 8 7 11 11 C 1.38336 * 120.29058 * 359.73863 * 10 9 8 12 12 C 1.37973 * 120.14890 * 0.02705 * 11 10 9 13 13 C 1.50707 * 120.07581 * 180.02562 * 12 11 10 14 14 C 1.53002 * 109.46790 * 261.81807 * 13 12 11 15 15 N 1.46903 * 109.46863 * 179.97438 * 14 13 12 16 16 C 1.46897 * 110.99734 * 66.04454 * 15 14 13 17 17 C 1.46895 * 110.99717 * 189.99890 * 15 14 13 18 18 C 1.53005 * 109.47111 * 239.99744 * 2 1 3 19 19 H 1.09000 * 109.47054 * 300.00219 * 18 2 1 20 20 C 1.52989 * 109.47200 * 179.97438 * 18 2 1 21 21 N 1.46509 * 109.46603 * 60.00157 * 18 2 1 22 22 C 1.36943 * 119.99484 * 204.99781 * 21 18 2 23 23 H 1.07996 * 120.00062 * 0.02562 * 22 21 18 24 24 C 1.38815 * 119.99498 * 179.97438 * 22 21 18 25 25 N 1.31612 * 120.00146 * 0.02562 * 24 22 21 26 26 Si 1.86802 * 119.99513 * 180.02562 * 24 22 21 27 27 H 1.48493 * 109.47175 * 60.00292 * 26 24 22 28 28 H 1.48498 * 109.46672 * 180.02562 * 26 24 22 29 29 H 1.48503 * 109.46962 * 300.00326 * 26 24 22 30 30 H 1.08999 * 109.46855 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47365 * 299.99819 * 1 2 3 32 32 H 1.08997 * 109.47190 * 59.99828 * 1 2 3 33 33 H 0.97005 * 120.00159 * 95.00493 * 4 2 1 34 34 H 1.07997 * 120.07073 * 0.02562 * 8 7 5 35 35 H 1.07999 * 119.92437 * 180.22847 * 9 8 7 36 36 H 1.07996 * 119.85536 * 179.76593 * 10 9 8 37 37 H 1.08002 * 119.92312 * 180.02562 * 11 10 9 38 38 H 1.08996 * 109.47105 * 21.81620 * 13 12 11 39 39 H 1.08999 * 109.46946 * 141.82066 * 13 12 11 40 40 H 1.08996 * 109.47144 * 299.99789 * 14 13 12 41 41 H 1.09003 * 109.47167 * 59.99889 * 14 13 12 42 42 H 1.08999 * 109.47103 * 60.00127 * 16 15 14 43 43 H 1.09004 * 109.47029 * 179.97438 * 16 15 14 44 44 H 1.09000 * 109.47578 * 299.99625 * 16 15 14 45 45 H 1.08999 * 109.47374 * 59.99912 * 17 15 14 46 46 H 1.08998 * 109.47039 * 179.97438 * 17 15 14 47 47 H 1.08997 * 109.47464 * 299.99799 * 17 15 14 48 48 H 1.08998 * 109.47454 * 180.02562 * 20 18 2 49 49 H 1.08999 * 109.47714 * 300.00718 * 20 18 2 50 50 H 1.09004 * 109.47182 * 59.99891 * 20 18 2 51 51 H 0.96998 * 120.00070 * 25.00097 * 21 18 2 52 52 H 0.97000 * 120.00286 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.1471 -0.0182 2.3571 6 8 1.8576 1.1610 2.4117 7 6 2.6394 -0.7154 3.5644 8 6 2.8605 -2.0934 3.5370 9 6 3.3240 -2.7370 4.6656 10 6 3.5602 -2.0212 5.8261 11 6 3.3386 -0.6562 5.8613 12 6 2.8796 0.0005 4.7380 13 6 2.6393 1.4878 4.7780 14 6 1.1516 1.7578 5.0117 15 7 0.9174 3.2076 5.0513 16 6 1.1824 3.8195 3.7424 17 6 -0.4464 3.5082 5.5067 18 6 2.0400 -0.7213 -1.2493 19 1 1.6767 -1.7490 -1.2492 20 6 3.5699 -0.7208 -1.2496 21 7 1.5516 -0.0306 -2.4454 22 6 1.4209 -0.7138 -3.6251 23 1 1.6773 -1.7618 -3.6734 24 6 0.9576 -0.0595 -4.7583 25 7 0.6446 1.2175 -4.6992 26 14 0.7786 -0.9916 -6.3672 27 1 -0.1766 -2.1140 -6.1854 28 1 0.2697 -0.0732 -7.4173 29 1 2.1008 -1.5285 -6.7780 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 2.2491 -1.6318 1.1526 34 1 2.6726 -2.6538 2.6331 35 1 3.4990 -3.8025 4.6446 36 1 3.9195 -2.5304 6.7081 37 1 3.5253 -0.1033 6.7701 38 1 3.2202 1.9280 5.5885 39 1 2.9445 1.9307 3.8300 40 1 0.5707 1.3176 4.2013 41 1 0.8464 1.3148 5.9597 42 1 0.5223 3.3791 2.9951 43 1 1.0009 4.8928 3.7997 44 1 2.2202 3.6407 3.4611 45 1 -0.5929 3.1030 6.5079 46 1 -0.5929 4.5881 5.5271 47 1 -1.1655 3.0566 4.8233 48 1 3.9333 -1.2342 -2.1398 49 1 3.9330 0.3070 -1.2497 50 1 3.9337 -1.2343 -0.3596 51 1 1.3210 0.9105 -2.4019 52 1 0.3212 1.6748 -5.4911 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700410926.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:35:20 Heat of formation + Delta-G solvation = 4.030966 kcal Electronic energy + Delta-G solvation = -29585.318038 eV Core-core repulsion = 25778.016768 eV Total energy + Delta-G solvation = -3807.301271 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.57447 -38.61027 -37.46128 -36.63928 -34.14471 -33.02787 -32.15238 -31.11077 -29.39670 -28.84113 -28.38144 -27.46381 -24.91935 -24.03161 -23.91817 -22.69856 -21.75805 -20.79746 -20.29346 -19.90006 -17.84323 -17.31356 -16.26057 -15.94871 -15.63081 -15.26722 -15.11451 -14.85980 -14.69197 -14.61640 -14.38317 -13.76452 -13.63051 -13.38987 -13.21439 -13.11310 -12.86938 -12.77920 -12.44369 -12.25956 -11.99009 -11.86594 -11.77106 -11.70606 -11.68331 -11.42616 -11.21163 -11.11764 -10.99742 -10.84556 -10.78900 -10.61397 -10.26652 -9.91588 -9.75992 -9.46885 -9.20168 -9.04683 -8.95311 -8.68235 -8.29441 -7.01792 -5.80036 -3.09759 0.71776 1.12701 2.89587 3.28483 3.41362 3.46464 3.47120 3.69348 4.01818 4.55030 4.58517 4.63353 4.67875 4.84669 5.05450 5.13508 5.19670 5.23512 5.29813 5.31675 5.45882 5.46964 5.53660 5.64680 5.67953 5.68897 5.73309 5.75793 5.76860 5.86657 5.87282 5.97681 6.06825 6.07911 6.10086 6.19520 6.23012 6.28260 6.35612 6.40001 6.45802 6.53078 6.61327 6.67617 6.78540 6.93399 7.00967 7.05590 7.08373 7.65348 7.68234 8.36009 8.38699 9.48940 10.04053 10.39167 11.42258 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.013224 B = 0.002925 C = 0.002496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2116.827336 B = 9571.048912 C =11214.056932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.138 3.862 3 H 0.086 0.914 4 N -0.712 5.712 5 C 0.552 3.448 6 O -0.527 6.527 7 C -0.131 4.131 8 C -0.085 4.085 9 C -0.134 4.134 10 C -0.096 4.096 11 C -0.127 4.127 12 C -0.021 4.021 13 C -0.084 4.084 14 C 0.073 3.927 15 N -0.547 5.547 16 C 0.031 3.969 17 C 0.025 3.975 18 C 0.169 3.831 19 H 0.049 0.951 20 C -0.164 4.164 21 N -0.718 5.718 22 C -0.240 4.240 23 H 0.070 0.930 24 C -0.011 4.011 25 N -0.931 5.931 26 Si 0.907 3.093 27 H -0.286 1.286 28 H -0.291 1.291 29 H -0.286 1.286 30 H 0.049 0.951 31 H 0.045 0.955 32 H 0.080 0.920 33 H 0.395 0.605 34 H 0.126 0.874 35 H 0.126 0.874 36 H 0.124 0.876 37 H 0.127 0.873 38 H 0.068 0.932 39 H 0.105 0.895 40 H 0.047 0.953 41 H 0.059 0.941 42 H 0.034 0.966 43 H 0.056 0.944 44 H 0.072 0.928 45 H 0.063 0.937 46 H 0.065 0.935 47 H 0.024 0.976 48 H 0.054 0.946 49 H 0.047 0.953 50 H 0.035 0.965 51 H 0.385 0.615 52 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.826 -4.284 23.946 24.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.033 3.967 3 H 0.104 0.896 4 N -0.363 5.363 5 C 0.340 3.660 6 O -0.406 6.406 7 C -0.134 4.134 8 C -0.103 4.103 9 C -0.152 4.152 10 C -0.114 4.114 11 C -0.146 4.146 12 C -0.023 4.023 13 C -0.121 4.121 14 C -0.055 4.055 15 N -0.271 5.271 16 C -0.117 4.117 17 C -0.123 4.123 18 C 0.058 3.942 19 H 0.067 0.933 20 C -0.224 4.224 21 N -0.360 5.360 22 C -0.371 4.371 23 H 0.088 0.912 24 C -0.207 4.207 25 N -0.579 5.579 26 Si 0.738 3.262 27 H -0.213 1.213 28 H -0.217 1.217 29 H -0.213 1.213 30 H 0.068 0.932 31 H 0.064 0.936 32 H 0.099 0.901 33 H 0.230 0.770 34 H 0.144 0.856 35 H 0.144 0.856 36 H 0.142 0.858 37 H 0.145 0.855 38 H 0.086 0.914 39 H 0.123 0.877 40 H 0.065 0.935 41 H 0.078 0.922 42 H 0.053 0.947 43 H 0.075 0.925 44 H 0.091 0.909 45 H 0.081 0.919 46 H 0.084 0.916 47 H 0.042 0.958 48 H 0.073 0.927 49 H 0.066 0.934 50 H 0.054 0.946 51 H 0.220 0.780 52 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 3.897 -3.323 24.119 24.657 hybrid contribution -0.569 -1.196 -1.570 2.054 sum 3.328 -4.519 22.549 23.237 Atomic orbital electron populations 1.22035 0.94968 1.01685 1.02213 1.21333 0.94325 0.97588 0.83424 0.89591 1.46037 1.66635 1.13848 1.09793 1.18225 0.78118 0.86703 0.82982 1.90720 1.49915 1.15210 1.84714 1.19937 1.04928 0.93926 0.94623 1.21339 0.96970 0.93347 0.98682 1.21079 1.00798 1.00196 0.93089 1.21324 0.97845 0.94228 0.98011 1.21080 1.00892 0.94554 0.98027 1.20002 0.94368 0.96288 0.91642 1.20802 0.96731 0.90123 1.04483 1.21929 0.95781 0.87614 1.00172 1.62030 1.25119 1.11582 1.28394 1.22332 1.02436 0.98130 0.88845 1.22340 0.88824 1.01333 0.99841 1.20387 0.92100 0.95521 0.86179 0.93291 1.22444 0.99044 1.01136 0.99794 1.42279 1.78222 1.10669 1.04800 1.19140 1.37005 0.93837 0.87150 0.91237 1.24732 1.01979 0.95955 0.98031 1.69645 1.50531 1.08626 1.29070 0.86280 0.77761 0.78608 0.83585 1.21273 1.21693 1.21293 0.93188 0.93583 0.90148 0.77028 0.85595 0.85574 0.85758 0.85458 0.91362 0.87744 0.93475 0.92203 0.94725 0.92522 0.90911 0.91852 0.91594 0.95783 0.92658 0.93398 0.94631 0.78049 0.93379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.57 9.33 37.16 0.35 -2.22 16 2 C 0.14 2.29 2.21 -67.93 -0.15 2.14 16 3 H 0.09 1.61 7.58 -51.93 -0.39 1.21 16 4 N -0.71 -9.59 4.33 -54.75 -0.24 -9.82 16 5 C 0.55 7.71 7.61 -12.33 -0.09 7.61 16 6 O -0.53 -8.44 10.26 5.32 0.05 -8.38 16 7 C -0.13 -1.54 5.87 -104.97 -0.62 -2.16 16 8 C -0.08 -0.81 9.53 -39.18 -0.37 -1.18 16 9 C -0.13 -1.09 10.03 -39.64 -0.40 -1.48 16 10 C -0.10 -0.76 10.04 -39.49 -0.40 -1.15 16 11 C -0.13 -1.15 9.66 -39.64 -0.38 -1.53 16 12 C -0.02 -0.24 5.17 -104.22 -0.54 -0.78 16 13 C -0.08 -0.99 4.53 -27.88 -0.13 -1.12 16 14 C 0.07 0.89 4.49 -3.82 -0.02 0.87 16 15 N -0.55 -6.68 5.02 -251.26 -1.26 -7.94 16 16 C 0.03 0.39 8.54 60.06 0.51 0.91 16 17 C 0.03 0.26 9.57 60.06 0.57 0.84 16 18 C 0.17 3.16 2.52 -67.93 -0.17 2.99 16 19 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 20 C -0.16 -2.87 9.33 37.15 0.35 -2.52 16 21 N -0.72 -17.20 4.43 -53.42 -0.24 -17.44 16 22 C -0.24 -6.43 9.93 -15.06 -0.15 -6.58 16 23 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 24 C -0.01 -0.30 5.50 -17.43 -0.10 -0.39 16 25 N -0.93 -27.60 13.06 55.49 0.72 -26.88 16 26 Si 0.91 22.00 29.55 -169.99 -5.02 16.97 16 27 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 28 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 29 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 30 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.08 1.57 7.45 -51.93 -0.39 1.18 16 33 H 0.39 4.43 6.46 -40.82 -0.26 4.16 16 34 H 0.13 0.99 6.45 -52.49 -0.34 0.65 16 35 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 36 H 0.12 0.67 8.06 -52.49 -0.42 0.25 16 37 H 0.13 0.92 8.05 -52.49 -0.42 0.50 16 38 H 0.07 0.73 8.02 -51.93 -0.42 0.32 16 39 H 0.10 1.46 4.36 -51.93 -0.23 1.23 16 40 H 0.05 0.68 6.56 -51.93 -0.34 0.34 16 41 H 0.06 0.67 8.06 -51.93 -0.42 0.25 16 42 H 0.03 0.50 7.94 -51.93 -0.41 0.09 16 43 H 0.06 0.65 8.12 -51.93 -0.42 0.23 16 44 H 0.07 0.98 6.46 -51.93 -0.34 0.65 16 45 H 0.06 0.58 8.12 -51.93 -0.42 0.15 16 46 H 0.07 0.62 8.12 -51.93 -0.42 0.19 16 47 H 0.02 0.26 8.14 -51.93 -0.42 -0.16 16 48 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 49 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 50 H 0.03 0.51 7.45 -51.93 -0.39 0.12 16 51 H 0.39 9.97 7.58 -40.82 -0.31 9.66 16 52 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 409.64 15.07 6.17 6.17 Total: -1.00 -30.24 409.64 -10.38 -40.62 By element: Atomic # 1 Polarization: 21.32 SS G_CDS: -8.84 Total: 12.48 kcal Atomic # 6 Polarization: -4.04 SS G_CDS: -1.73 Total: -5.77 kcal Atomic # 7 Polarization: -61.07 SS G_CDS: -1.01 Total: -62.08 kcal Atomic # 8 Polarization: -8.44 SS G_CDS: 0.05 Total: -8.38 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -30.24 -10.38 -40.62 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700410926.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.648 kcal (2) G-P(sol) polarization free energy of solvation -30.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.617 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds