Wall clock time and date at job start Tue Mar 31 2020 17:35:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.46855 * 2 1 4 4 N 1.46496 * 109.47077 * 119.99899 * 2 1 3 5 5 C 1.34775 * 120.00206 * 274.99731 * 4 2 1 6 6 O 1.21548 * 119.99672 * 0.02562 * 5 4 2 7 7 C 1.47846 * 119.99822 * 179.97438 * 5 4 2 8 8 C 1.39594 * 120.14719 * 354.39519 * 7 5 4 9 9 C 1.37941 * 119.85082 * 179.78739 * 8 7 5 10 10 C 1.38380 * 120.14557 * 0.49054 * 9 8 7 11 11 C 1.38336 * 120.29058 * 359.73863 * 10 9 8 12 12 C 1.37973 * 120.14890 * 0.02705 * 11 10 9 13 13 C 1.50707 * 120.07581 * 180.02562 * 12 11 10 14 14 C 1.53002 * 109.46790 * 261.81807 * 13 12 11 15 15 N 1.46903 * 109.46863 * 179.97438 * 14 13 12 16 16 C 1.46897 * 110.99734 * 66.04454 * 15 14 13 17 17 C 1.46895 * 110.99717 * 189.99890 * 15 14 13 18 18 C 1.53005 * 109.47111 * 239.99744 * 2 1 3 19 19 H 1.09000 * 109.47054 * 300.00219 * 18 2 1 20 20 C 1.52989 * 109.47200 * 179.97438 * 18 2 1 21 21 N 1.46509 * 109.46603 * 60.00157 * 18 2 1 22 22 C 1.36943 * 119.99484 * 204.99781 * 21 18 2 23 23 H 1.07996 * 120.00062 * 0.02562 * 22 21 18 24 24 C 1.38815 * 119.99498 * 179.97438 * 22 21 18 25 25 N 1.31612 * 120.00146 * 0.02562 * 24 22 21 26 26 Si 1.86802 * 119.99513 * 180.02562 * 24 22 21 27 27 H 1.48493 * 109.47175 * 60.00292 * 26 24 22 28 28 H 1.48498 * 109.46672 * 180.02562 * 26 24 22 29 29 H 1.48503 * 109.46962 * 300.00326 * 26 24 22 30 30 H 1.08999 * 109.46855 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47365 * 299.99819 * 1 2 3 32 32 H 1.08997 * 109.47190 * 59.99828 * 1 2 3 33 33 H 0.97005 * 120.00159 * 95.00493 * 4 2 1 34 34 H 1.07997 * 120.07073 * 0.02562 * 8 7 5 35 35 H 1.07999 * 119.92437 * 180.22847 * 9 8 7 36 36 H 1.07996 * 119.85536 * 179.76593 * 10 9 8 37 37 H 1.08002 * 119.92312 * 180.02562 * 11 10 9 38 38 H 1.08996 * 109.47105 * 21.81620 * 13 12 11 39 39 H 1.08999 * 109.46946 * 141.82066 * 13 12 11 40 40 H 1.08996 * 109.47144 * 299.99789 * 14 13 12 41 41 H 1.09003 * 109.47167 * 59.99889 * 14 13 12 42 42 H 1.08999 * 109.47103 * 60.00127 * 16 15 14 43 43 H 1.09004 * 109.47029 * 179.97438 * 16 15 14 44 44 H 1.09000 * 109.47578 * 299.99625 * 16 15 14 45 45 H 1.08999 * 109.47374 * 59.99912 * 17 15 14 46 46 H 1.08998 * 109.47039 * 179.97438 * 17 15 14 47 47 H 1.08997 * 109.47464 * 299.99799 * 17 15 14 48 48 H 1.08998 * 109.47454 * 180.02562 * 20 18 2 49 49 H 1.08999 * 109.47714 * 300.00718 * 20 18 2 50 50 H 1.09004 * 109.47182 * 59.99891 * 20 18 2 51 51 H 0.96998 * 120.00070 * 25.00097 * 21 18 2 52 52 H 0.97000 * 120.00286 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.1471 -0.0182 2.3571 6 8 1.8576 1.1610 2.4117 7 6 2.6394 -0.7154 3.5644 8 6 2.8605 -2.0934 3.5370 9 6 3.3240 -2.7370 4.6656 10 6 3.5602 -2.0212 5.8261 11 6 3.3386 -0.6562 5.8613 12 6 2.8796 0.0005 4.7380 13 6 2.6393 1.4878 4.7780 14 6 1.1516 1.7578 5.0117 15 7 0.9174 3.2076 5.0513 16 6 1.1824 3.8195 3.7424 17 6 -0.4464 3.5082 5.5067 18 6 2.0400 -0.7213 -1.2493 19 1 1.6767 -1.7490 -1.2492 20 6 3.5699 -0.7208 -1.2496 21 7 1.5516 -0.0306 -2.4454 22 6 1.4209 -0.7138 -3.6251 23 1 1.6773 -1.7618 -3.6734 24 6 0.9576 -0.0595 -4.7583 25 7 0.6446 1.2175 -4.6992 26 14 0.7786 -0.9916 -6.3672 27 1 -0.1766 -2.1140 -6.1854 28 1 0.2697 -0.0732 -7.4173 29 1 2.1008 -1.5285 -6.7780 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 2.2491 -1.6318 1.1526 34 1 2.6726 -2.6538 2.6331 35 1 3.4990 -3.8025 4.6446 36 1 3.9195 -2.5304 6.7081 37 1 3.5253 -0.1033 6.7701 38 1 3.2202 1.9280 5.5885 39 1 2.9445 1.9307 3.8300 40 1 0.5707 1.3176 4.2013 41 1 0.8464 1.3148 5.9597 42 1 0.5223 3.3791 2.9951 43 1 1.0009 4.8928 3.7997 44 1 2.2202 3.6407 3.4611 45 1 -0.5929 3.1030 6.5079 46 1 -0.5929 4.5881 5.5271 47 1 -1.1655 3.0566 4.8233 48 1 3.9333 -1.2342 -2.1398 49 1 3.9330 0.3070 -1.2497 50 1 3.9337 -1.2343 -0.3596 51 1 1.3210 0.9105 -2.4019 52 1 0.3212 1.6748 -5.4911 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700410926.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:35:19 Heat of formation + Delta-G solvation = -14.641479 kcal Electronic energy + Delta-G solvation = -29586.127736 eV Core-core repulsion = 25778.016768 eV Total energy + Delta-G solvation = -3808.110969 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.54228 -39.63054 -38.40554 -38.04434 -35.67639 -34.05053 -33.54331 -32.31220 -30.61664 -30.15828 -29.71083 -28.45419 -25.93581 -25.84863 -24.89881 -23.93682 -22.67333 -21.86793 -21.51084 -21.10882 -19.38865 -18.67283 -17.25767 -16.99151 -16.73199 -16.41412 -16.21523 -16.17825 -15.70044 -15.61265 -15.52821 -15.21822 -15.12065 -14.75740 -14.52671 -14.10700 -13.97267 -13.78258 -13.70216 -13.42032 -13.24804 -13.14218 -12.93779 -12.74653 -12.71620 -12.66887 -12.59967 -12.50570 -12.34174 -12.26960 -12.21410 -11.89437 -11.74738 -11.68952 -11.46472 -10.97430 -10.57309 -10.11365 -9.84191 -9.63514 -9.31276 -9.02136 -7.92422 -5.21535 -0.05630 0.44041 1.48277 1.50798 1.56696 1.96565 2.14051 2.59339 2.87494 3.10033 3.41589 3.68703 3.80691 3.92383 3.93665 4.01709 4.17849 4.19153 4.20410 4.30103 4.33902 4.37583 4.52085 4.53000 4.56138 4.56810 4.68489 4.71632 4.76580 4.79192 4.86487 4.89856 4.94539 4.95172 5.02362 5.03006 5.06051 5.12957 5.18351 5.28037 5.30969 5.41033 5.49421 5.51250 5.55460 5.62371 5.65634 5.99431 6.06235 6.13693 6.28143 6.61427 7.30285 7.34686 8.07905 8.31434 9.30897 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.013224 B = 0.002925 C = 0.002496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2116.827336 B = 9571.048912 C =11214.056932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.156 3.844 3 H 0.060 0.940 4 N -0.704 5.704 5 C 0.548 3.452 6 O -0.554 6.554 7 C -0.152 4.152 8 C -0.088 4.088 9 C -0.131 4.131 10 C -0.088 4.088 11 C -0.130 4.130 12 C -0.038 4.038 13 C -0.077 4.077 14 C 0.080 3.920 15 N -0.550 5.550 16 C 0.040 3.960 17 C 0.024 3.976 18 C 0.169 3.831 19 H 0.060 0.940 20 C -0.153 4.153 21 N -0.730 5.730 22 C -0.235 4.235 23 H 0.080 0.920 24 C -0.075 4.075 25 N -0.970 5.970 26 Si 0.971 3.029 27 H -0.277 1.277 28 H -0.300 1.300 29 H -0.279 1.279 30 H 0.061 0.939 31 H 0.044 0.956 32 H 0.050 0.950 33 H 0.409 0.591 34 H 0.141 0.859 35 H 0.155 0.845 36 H 0.156 0.844 37 H 0.146 0.854 38 H 0.077 0.923 39 H 0.077 0.923 40 H 0.019 0.981 41 H 0.073 0.927 42 H 0.008 0.992 43 H 0.070 0.930 44 H 0.061 0.939 45 H 0.080 0.920 46 H 0.077 0.923 47 H 0.013 0.987 48 H 0.043 0.957 49 H 0.031 0.969 50 H 0.071 0.929 51 H 0.371 0.629 52 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.892 -7.078 26.393 27.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.050 3.950 3 H 0.079 0.921 4 N -0.356 5.356 5 C 0.337 3.663 6 O -0.434 6.434 7 C -0.155 4.155 8 C -0.107 4.107 9 C -0.149 4.149 10 C -0.106 4.106 11 C -0.148 4.148 12 C -0.040 4.040 13 C -0.114 4.114 14 C -0.048 4.048 15 N -0.274 5.274 16 C -0.109 4.109 17 C -0.124 4.124 18 C 0.060 3.940 19 H 0.078 0.922 20 C -0.213 4.213 21 N -0.370 5.370 22 C -0.366 4.366 23 H 0.098 0.902 24 C -0.267 4.267 25 N -0.621 5.621 26 Si 0.800 3.200 27 H -0.203 1.203 28 H -0.227 1.227 29 H -0.205 1.205 30 H 0.080 0.920 31 H 0.064 0.936 32 H 0.069 0.931 33 H 0.246 0.754 34 H 0.159 0.841 35 H 0.173 0.827 36 H 0.174 0.826 37 H 0.163 0.837 38 H 0.096 0.904 39 H 0.096 0.904 40 H 0.038 0.962 41 H 0.091 0.909 42 H 0.027 0.973 43 H 0.089 0.911 44 H 0.080 0.920 45 H 0.098 0.902 46 H 0.095 0.905 47 H 0.032 0.968 48 H 0.062 0.938 49 H 0.050 0.950 50 H 0.090 0.910 51 H 0.203 0.797 52 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 4.992 -6.180 26.613 27.773 hybrid contribution -0.858 -0.373 -2.162 2.356 sum 4.134 -6.554 24.451 25.649 Atomic orbital electron populations 1.21892 0.95361 1.01869 1.00662 1.20835 0.93789 0.96329 0.84026 0.92148 1.45788 1.66778 1.14351 1.08695 1.18715 0.77490 0.86526 0.83589 1.90727 1.50897 1.16578 1.85155 1.19811 1.07018 0.95028 0.93668 1.21562 0.96673 0.92336 1.00092 1.21463 0.99422 1.01634 0.92404 1.21740 0.96094 0.93698 0.99032 1.21315 1.00260 0.95421 0.97800 1.20048 0.95620 0.95789 0.92499 1.20657 0.96338 0.91121 1.03274 1.21862 0.95861 0.87430 0.99626 1.62094 1.26244 1.11586 1.27476 1.22211 1.01118 0.98786 0.88755 1.22421 0.87512 1.02164 1.00318 1.20551 0.92873 0.95538 0.85085 0.92231 1.22286 0.97581 1.00497 1.00953 1.42460 1.78477 1.10207 1.05898 1.19554 1.34888 0.94258 0.87942 0.90221 1.25525 1.03008 0.96797 1.01399 1.69817 1.52582 1.10288 1.29423 0.85253 0.77936 0.77308 0.79507 1.20270 1.22655 1.20473 0.92006 0.93647 0.93104 0.75381 0.84120 0.82729 0.82626 0.83672 0.90420 0.90447 0.96248 0.90875 0.97296 0.91136 0.92004 0.90156 0.90462 0.96829 0.93804 0.94957 0.91030 0.79666 0.94168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.90 9.33 71.98 0.67 -4.23 16 2 C 0.16 5.28 2.21 44.99 0.10 5.38 16 3 H 0.06 2.39 7.58 -2.39 -0.02 2.37 16 4 N -0.70 -18.58 4.33 -445.41 -1.93 -20.51 16 5 C 0.55 15.43 7.61 86.79 0.66 16.09 16 6 O -0.55 -18.70 10.26 -3.87 -0.04 -18.74 16 7 C -0.15 -3.42 5.87 -20.09 -0.12 -3.54 16 8 C -0.09 -1.45 9.53 22.53 0.21 -1.23 16 9 C -0.13 -1.61 10.03 22.23 0.22 -1.38 16 10 C -0.09 -1.02 10.04 22.33 0.22 -0.79 16 11 C -0.13 -1.98 9.66 22.23 0.21 -1.77 16 12 C -0.04 -0.81 5.17 -19.61 -0.10 -0.91 16 13 C -0.08 -1.81 4.53 29.85 0.14 -1.68 16 14 C 0.08 1.97 4.49 86.30 0.39 2.36 16 15 N -0.55 -13.51 5.02 -948.86 -4.76 -18.28 16 16 C 0.04 1.07 8.54 127.69 1.09 2.16 16 17 C 0.02 0.49 9.57 127.69 1.22 1.71 16 18 C 0.17 6.28 2.52 44.99 0.11 6.39 16 19 H 0.06 2.12 8.08 -2.39 -0.02 2.11 16 20 C -0.15 -5.24 9.33 71.98 0.67 -4.56 16 21 N -0.73 -35.74 4.43 -322.93 -1.43 -37.17 16 22 C -0.23 -12.61 9.93 84.03 0.83 -11.77 16 23 H 0.08 4.04 7.83 -2.91 -0.02 4.02 16 24 C -0.08 -4.25 5.50 84.86 0.47 -3.78 16 25 N -0.97 -59.34 13.06 21.65 0.28 -59.06 16 26 Si 0.97 45.61 29.55 68.60 2.03 47.64 16 27 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 28 H -0.30 -14.41 7.11 99.48 0.71 -13.71 16 29 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 30 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 31 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.05 2.08 7.45 -2.39 -0.02 2.07 16 33 H 0.41 8.39 6.46 -92.70 -0.60 7.79 16 34 H 0.14 1.77 6.45 -2.91 -0.02 1.75 16 35 H 0.16 1.02 8.06 -2.91 -0.02 1.00 16 36 H 0.16 0.85 8.06 -2.91 -0.02 0.82 16 37 H 0.15 1.63 8.05 -2.91 -0.02 1.60 16 38 H 0.08 1.62 8.02 -2.39 -0.02 1.60 16 39 H 0.08 2.27 4.36 -2.39 -0.01 2.26 16 40 H 0.02 0.59 6.56 -2.39 -0.02 0.57 16 41 H 0.07 1.57 8.06 -2.39 -0.02 1.55 16 42 H 0.01 0.27 7.94 -2.39 -0.02 0.25 16 43 H 0.07 1.66 8.12 -2.39 -0.02 1.64 16 44 H 0.06 1.79 6.46 -2.39 -0.02 1.77 16 45 H 0.08 1.35 8.12 -2.39 -0.02 1.33 16 46 H 0.08 1.38 8.12 -2.39 -0.02 1.36 16 47 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 48 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 49 H 0.03 1.18 8.14 -2.39 -0.02 1.17 16 50 H 0.07 1.91 7.45 -2.39 -0.02 1.89 16 51 H 0.37 20.10 7.58 -92.71 -0.70 19.40 16 52 H 0.25 14.93 8.31 -92.71 -0.77 14.16 16 Total: -1.00 -67.92 409.64 0.77 -67.15 By element: Atomic # 1 Polarization: 40.91 SS G_CDS: -0.39 Total: 40.52 kcal Atomic # 6 Polarization: -8.56 SS G_CDS: 7.01 Total: -1.55 kcal Atomic # 7 Polarization: -127.18 SS G_CDS: -7.84 Total: -135.02 kcal Atomic # 8 Polarization: -18.70 SS G_CDS: -0.04 Total: -18.74 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 2.03 Total: 47.64 kcal Total: -67.92 0.77 -67.15 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700410926.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.513 kcal (2) G-P(sol) polarization free energy of solvation -67.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds