Wall clock time and date at job start Tue Mar 31 2020 17:28:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.47002 * 2 1 4 4 C 1.52997 * 109.47127 * 240.00426 * 2 1 3 5 5 C 1.50699 * 109.47337 * 64.99823 * 4 2 1 6 6 O 1.21281 * 119.99984 * 359.97438 * 5 4 2 7 7 N 1.34781 * 120.00326 * 180.02562 * 5 4 2 8 8 C 1.46504 * 119.99638 * 359.97438 * 7 5 4 9 9 C 1.46492 * 120.00279 * 179.97438 * 7 5 4 10 10 C 1.53004 * 109.47389 * 240.00022 * 9 7 5 11 11 C 1.52997 * 109.47456 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.47258 * 59.99406 * 11 10 9 13 13 N 1.46505 * 109.47246 * 180.02562 * 12 11 10 14 14 C 1.36939 * 119.99642 * 275.00324 * 13 12 11 15 15 H 1.08003 * 120.00406 * 359.97438 * 14 13 12 16 16 C 1.38810 * 119.99583 * 179.97438 * 14 13 12 17 17 N 1.31625 * 119.99817 * 180.02562 * 16 14 13 18 18 Si 1.86803 * 120.00220 * 0.02562 * 16 14 13 19 19 H 1.48496 * 109.46890 * 90.00022 * 18 16 14 20 20 H 1.48503 * 109.46995 * 209.99941 * 18 16 14 21 21 H 1.48499 * 109.46841 * 329.99731 * 18 16 14 22 22 C 1.52998 * 109.47434 * 300.00006 * 12 11 10 23 23 C 1.53004 * 109.47365 * 119.99771 * 9 7 5 24 24 N 1.46492 * 109.47363 * 120.00126 * 2 1 3 25 25 C 1.36345 * 125.63585 * 59.69057 * 24 2 1 26 26 C 1.34849 * 108.22140 * 179.83120 * 25 24 2 27 27 C 1.40899 * 107.41461 * 0.42931 * 26 25 24 28 28 C 1.34852 * 107.41356 * 359.73307 * 27 26 25 29 29 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47050 * 299.99734 * 1 2 3 31 31 H 1.09001 * 109.46801 * 59.99846 * 1 2 3 32 32 H 1.09004 * 109.47346 * 184.99897 * 4 2 1 33 33 H 1.09002 * 109.47196 * 304.99671 * 4 2 1 34 34 H 1.09002 * 109.47083 * 90.00188 * 8 7 5 35 35 H 1.08993 * 109.46712 * 210.00057 * 8 7 5 36 36 H 1.08995 * 109.47004 * 330.00045 * 8 7 5 37 37 H 1.09000 * 109.47228 * 359.97438 * 9 7 5 38 38 H 1.09005 * 109.46382 * 299.99906 * 10 9 7 39 39 H 1.08996 * 109.46632 * 59.99618 * 10 9 7 40 40 H 1.09003 * 109.46511 * 299.99774 * 11 10 9 41 41 H 1.08993 * 109.47356 * 180.02562 * 11 10 9 42 42 H 1.09000 * 109.46830 * 60.00227 * 12 11 10 43 43 H 0.96994 * 119.99851 * 95.00016 * 13 12 11 44 44 H 0.97000 * 120.00089 * 180.02562 * 17 16 14 45 45 H 1.08995 * 109.47408 * 300.00657 * 22 12 11 46 46 H 1.08999 * 109.47289 * 179.97438 * 22 12 11 47 47 H 1.09004 * 109.46824 * 300.00102 * 23 9 7 48 48 H 1.09000 * 109.46876 * 59.99871 * 23 9 7 49 49 H 1.08000 * 125.88845 * 359.96783 * 25 24 2 50 50 H 1.07999 * 126.29592 * 180.16813 * 26 25 24 51 51 H 1.07995 * 126.28931 * 179.73560 * 27 26 25 52 52 H 1.07998 * 125.88597 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7211 -1.2493 5 6 1.6414 0.0572 -2.4766 6 8 1.0109 1.0870 -2.3633 7 7 1.9845 -0.3917 -3.7003 8 6 2.7456 -1.6360 -3.8371 9 6 1.5964 0.3646 -4.8933 10 6 0.7162 -0.5104 -5.7880 11 6 0.3115 0.2792 -7.0344 12 6 1.5664 0.6958 -7.8041 13 7 1.1788 1.4524 -8.9973 14 6 0.8503 0.7912 -10.1506 15 1 0.8773 -0.2881 -10.1807 16 6 0.4826 1.5081 -11.2809 17 7 0.1663 0.8726 -12.3893 18 14 0.4366 3.3749 -11.2290 19 1 1.7631 3.9138 -11.6227 20 1 -0.5987 3.8709 -12.1711 21 1 0.1086 3.8238 -9.8520 22 6 2.4465 1.5709 -6.9095 23 6 2.8511 0.7816 -5.6633 24 7 2.0184 -0.6906 1.1961 25 6 1.7560 -1.9868 1.5278 26 6 2.3800 -2.2588 2.6918 27 6 3.0442 -1.0846 3.0986 28 6 2.8055 -0.1417 2.1646 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 3.1264 -0.7994 -1.2057 33 1 1.6055 -1.7197 -1.2952 34 1 2.0562 -2.4761 -3.9224 35 1 3.3680 -1.5847 -4.7304 36 1 3.3786 -1.7730 -2.9605 37 1 1.0405 1.2535 -4.5952 38 1 1.2719 -1.3996 -6.0862 39 1 -0.1775 -0.8075 -5.2394 40 1 -0.2439 1.1686 -6.7365 41 1 -0.3159 -0.3440 -7.6715 42 1 2.1218 -0.1936 -8.1020 43 1 1.1549 2.4217 -8.9703 44 1 -0.0903 1.3735 -13.1793 45 1 1.8911 2.4601 -6.6116 46 1 3.3408 1.8673 -7.4578 47 1 3.4781 1.4051 -5.0259 48 1 3.4066 -0.1075 -5.9615 49 1 1.1541 -2.6773 0.9556 50 1 2.3690 -3.2018 3.2180 51 1 3.6357 -0.9623 3.9939 52 1 3.1740 0.8733 2.1811 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700437184.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:28:21 Heat of formation + Delta-G solvation = 20.411569 kcal Electronic energy + Delta-G solvation = -28930.539470 eV Core-core repulsion = 25123.948516 eV Total energy + Delta-G solvation = -3806.590954 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.57988 -40.44843 -38.35861 -35.83383 -35.24388 -33.56143 -31.29433 -30.56166 -30.15652 -29.04134 -28.76474 -27.79653 -26.80260 -23.75752 -22.91009 -22.41815 -21.18399 -20.71241 -19.91158 -19.56720 -19.13268 -18.06844 -17.54591 -16.69709 -16.49392 -16.10900 -15.20948 -14.94735 -14.74006 -14.42620 -14.09672 -14.00380 -13.87568 -13.49836 -13.43578 -13.35157 -12.96577 -12.95791 -12.71307 -12.65056 -12.53335 -12.33522 -12.29166 -12.09468 -11.98645 -11.79453 -11.71095 -11.50963 -11.01619 -10.91271 -10.85256 -10.71987 -10.32754 -10.20485 -9.96043 -9.81170 -9.59290 -8.93101 -8.88181 -8.78970 -8.40859 -7.28339 -5.78691 -3.14083 2.01778 2.29666 2.43639 2.82270 2.91100 3.36616 3.39887 3.44535 4.06391 4.18447 4.36180 4.57852 4.66479 4.73115 4.80421 4.82794 4.88851 4.96435 4.96928 5.04836 5.07407 5.18664 5.27581 5.33544 5.36546 5.40317 5.44795 5.47352 5.54657 5.55183 5.56536 5.69903 5.74130 5.86315 5.89226 6.04388 6.07516 6.08432 6.13332 6.14433 6.23713 6.40289 6.45959 6.55250 6.75074 6.83768 6.98265 6.99848 7.12356 7.13075 7.87021 7.97622 8.40626 9.19315 9.92171 10.12093 11.39625 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.033535 B = 0.001983 C = 0.001960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.743472 B =14117.788809 C =14282.104605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.148 3.852 3 H 0.106 0.894 4 C -0.150 4.150 5 C 0.518 3.482 6 O -0.538 6.538 7 N -0.606 5.606 8 C 0.071 3.929 9 C 0.138 3.862 10 C -0.121 4.121 11 C -0.133 4.133 12 C 0.183 3.817 13 N -0.749 5.749 14 C -0.242 4.242 15 H 0.090 0.910 16 C 0.004 3.996 17 N -0.934 5.934 18 Si 0.884 3.116 19 H -0.285 1.285 20 H -0.291 1.291 21 H -0.277 1.277 22 C -0.125 4.125 23 C -0.119 4.119 24 N -0.443 5.443 25 C -0.015 4.015 26 C -0.204 4.204 27 C -0.205 4.205 28 C -0.015 4.015 29 H 0.058 0.942 30 H 0.062 0.938 31 H 0.096 0.904 32 H 0.100 0.900 33 H 0.100 0.900 34 H 0.059 0.941 35 H 0.080 0.920 36 H 0.069 0.931 37 H 0.101 0.899 38 H 0.062 0.938 39 H 0.057 0.943 40 H 0.055 0.945 41 H 0.070 0.930 42 H 0.055 0.945 43 H 0.361 0.639 44 H 0.259 0.741 45 H 0.060 0.940 46 H 0.068 0.932 47 H 0.060 0.940 48 H 0.066 0.934 49 H 0.157 0.843 50 H 0.132 0.868 51 H 0.133 0.867 52 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.464 -5.985 28.866 30.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.046 3.954 3 H 0.124 0.876 4 C -0.190 4.190 5 C 0.305 3.695 6 O -0.416 6.416 7 N -0.338 5.338 8 C -0.072 4.072 9 C 0.036 3.964 10 C -0.160 4.160 11 C -0.174 4.174 12 C 0.073 3.927 13 N -0.391 5.391 14 C -0.372 4.372 15 H 0.108 0.892 16 C -0.192 4.192 17 N -0.582 5.582 18 Si 0.714 3.286 19 H -0.211 1.211 20 H -0.218 1.218 21 H -0.203 1.203 22 C -0.164 4.164 23 C -0.158 4.158 24 N -0.118 5.118 25 C -0.144 4.144 26 C -0.229 4.229 27 C -0.229 4.229 28 C -0.145 4.145 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.114 0.886 32 H 0.119 0.881 33 H 0.118 0.882 34 H 0.078 0.922 35 H 0.098 0.902 36 H 0.088 0.912 37 H 0.119 0.881 38 H 0.081 0.919 39 H 0.075 0.925 40 H 0.074 0.926 41 H 0.088 0.912 42 H 0.073 0.927 43 H 0.193 0.807 44 H 0.069 0.931 45 H 0.079 0.921 46 H 0.086 0.914 47 H 0.079 0.921 48 H 0.084 0.916 49 H 0.174 0.826 50 H 0.150 0.850 51 H 0.150 0.850 52 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 5.967 -5.439 28.404 29.529 hybrid contribution -0.030 1.108 -0.118 1.115 sum 5.937 -4.331 28.286 29.225 Atomic orbital electron populations 1.22288 0.92710 1.02861 1.04543 1.21109 0.96120 0.96616 0.81553 0.87605 1.22039 1.03644 1.00895 0.92467 1.20262 0.79376 0.85487 0.84340 1.90693 1.40162 1.24615 1.86151 1.47978 1.54949 1.24819 1.06049 1.21856 0.96136 0.85864 1.03343 1.21291 0.96118 0.95547 0.83446 1.21848 0.98803 0.98695 0.96624 1.22202 1.00591 0.99695 0.94894 1.20199 0.92231 0.94127 0.86127 1.42799 1.82858 1.04378 1.09091 1.19069 1.37952 0.93049 0.87157 0.89242 1.24677 1.01491 0.97273 0.95770 1.69703 1.52430 1.34303 1.01779 0.86555 0.77539 0.87383 0.77090 1.21122 1.21787 1.20307 1.21802 1.00529 0.98852 0.95198 1.21792 0.96763 1.00421 0.96806 1.44364 1.39096 1.10316 1.18065 1.21732 1.06599 0.86325 0.99789 1.20890 1.04601 0.99339 0.98025 1.20889 1.06922 0.93947 1.01177 1.21864 1.01312 0.99769 0.91529 0.92333 0.91910 0.88577 0.88145 0.88160 0.92202 0.90173 0.91224 0.88070 0.91903 0.92452 0.92576 0.91162 0.92721 0.80674 0.93088 0.92129 0.91353 0.92136 0.91576 0.82596 0.84976 0.84958 0.82420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.39 8.97 37.16 0.33 -1.05 16 2 C 0.15 1.18 2.67 -67.93 -0.18 1.00 16 3 H 0.11 0.90 7.88 -51.93 -0.41 0.49 16 4 C -0.15 -1.06 3.72 -27.89 -0.10 -1.17 16 5 C 0.52 5.28 7.39 -10.98 -0.08 5.20 16 6 O -0.54 -7.27 13.29 5.56 0.07 -7.19 16 7 N -0.61 -5.89 2.76 -173.93 -0.48 -6.37 16 8 C 0.07 0.47 9.30 59.85 0.56 1.03 16 9 C 0.14 1.66 2.52 -67.93 -0.17 1.49 16 10 C -0.12 -1.55 5.21 -26.73 -0.14 -1.69 16 11 C -0.13 -2.20 5.50 -26.73 -0.15 -2.35 16 12 C 0.18 3.30 2.77 -67.93 -0.19 3.11 16 13 N -0.75 -17.26 4.92 -53.42 -0.26 -17.52 16 14 C -0.24 -6.69 10.41 -15.06 -0.16 -6.85 16 15 H 0.09 2.64 8.06 -52.48 -0.42 2.22 16 16 C 0.00 0.10 5.50 -17.43 -0.10 0.01 16 17 N -0.93 -29.10 13.97 55.49 0.78 -28.33 16 18 Si 0.88 22.03 27.74 -169.99 -4.71 17.31 16 19 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 20 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 21 H -0.28 -6.53 6.52 56.52 0.37 -6.16 16 22 C -0.12 -1.84 5.39 -26.75 -0.14 -1.99 16 23 C -0.12 -1.41 5.18 -26.75 -0.14 -1.54 16 24 N -0.44 -3.67 2.62 -110.03 -0.29 -3.95 16 25 C -0.01 -0.12 10.45 -16.75 -0.18 -0.29 16 26 C -0.20 -1.77 10.86 -39.78 -0.43 -2.20 16 27 C -0.20 -1.79 10.86 -39.78 -0.43 -2.22 16 28 C -0.01 -0.13 11.39 -16.75 -0.19 -0.32 16 29 H 0.06 0.44 7.91 -51.93 -0.41 0.03 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.10 0.97 5.95 -51.93 -0.31 0.67 16 32 H 0.10 0.63 7.40 -51.93 -0.38 0.24 16 33 H 0.10 0.58 8.03 -51.93 -0.42 0.17 16 34 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.08 0.53 6.43 -51.93 -0.33 0.20 16 36 H 0.07 0.33 6.44 -51.93 -0.33 0.00 16 37 H 0.10 1.44 6.90 -51.93 -0.36 1.08 16 38 H 0.06 0.75 7.67 -51.93 -0.40 0.35 16 39 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 40 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 42 H 0.05 1.03 8.08 -51.93 -0.42 0.61 16 43 H 0.36 8.25 5.66 -40.82 -0.23 8.02 16 44 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 45 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 46 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 47 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 48 H 0.07 0.72 6.66 -51.93 -0.35 0.37 16 49 H 0.16 0.96 8.06 -52.49 -0.42 0.53 16 50 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 51 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 52 H 0.16 1.02 8.06 -52.49 -0.42 0.60 16 LS Contribution 402.87 15.07 6.07 6.07 Total: -1.00 -32.76 402.87 -9.73 -42.49 By element: Atomic # 1 Polarization: 16.34 SS G_CDS: -9.02 Total: 7.32 kcal Atomic # 6 Polarization: -7.95 SS G_CDS: -1.89 Total: -9.83 kcal Atomic # 7 Polarization: -55.92 SS G_CDS: -0.26 Total: -56.17 kcal Atomic # 8 Polarization: -7.27 SS G_CDS: 0.07 Total: -7.19 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -4.71 Total: 17.31 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -32.76 -9.73 -42.49 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700437184.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.905 kcal (2) G-P(sol) polarization free energy of solvation -32.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.494 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds