Wall clock time and date at job start Tue Mar 31 2020 17:50:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47283 * 2 1 4 4 C 1.53007 * 109.47170 * 239.99903 * 2 1 3 5 5 N 1.46492 * 109.46998 * 185.00318 * 4 2 1 6 6 C 1.34783 * 120.00071 * 179.97438 * 5 4 2 7 7 O 1.21286 * 119.99750 * 0.02562 * 6 5 4 8 8 C 1.50692 * 120.00223 * 179.97438 * 6 5 4 9 9 C 1.53007 * 109.47150 * 180.02562 * 8 6 5 10 10 C 1.50702 * 109.47057 * 180.02562 * 9 8 6 11 11 C 1.38287 * 119.92290 * 90.00081 * 10 9 8 12 12 C 1.38106 * 120.07526 * 179.97438 * 11 10 9 13 13 C 1.38912 * 119.92178 * 0.02562 * 12 11 10 14 14 N 1.39670 * 120.07107 * 179.97438 * 13 12 11 15 15 C 1.46502 * 120.00448 * 359.97438 * 14 13 12 16 16 C 1.46501 * 119.99948 * 180.02562 * 14 13 12 17 17 C 1.38907 * 119.85286 * 0.25210 * 13 12 11 18 18 C 1.38109 * 119.92565 * 359.51897 * 17 13 12 19 19 N 1.46501 * 109.46872 * 120.00137 * 2 1 3 20 20 C 1.46498 * 120.00330 * 60.00101 * 19 2 1 21 21 C 1.36933 * 119.99904 * 239.99506 * 19 2 1 22 22 H 1.08001 * 120.00234 * 21.93968 * 21 19 2 23 23 C 1.38816 * 120.00173 * 201.93594 * 21 19 2 24 24 N 1.31613 * 119.99620 * 12.71993 * 23 21 19 25 25 Si 1.86797 * 120.00135 * 192.71551 * 23 21 19 26 26 H 1.48501 * 109.47179 * 0.02562 * 25 23 21 27 27 H 1.48503 * 109.47082 * 120.00086 * 25 23 21 28 28 H 1.48502 * 109.47305 * 240.00418 * 25 23 21 29 29 H 1.08997 * 109.47283 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46974 * 300.00243 * 1 2 3 31 31 H 1.09000 * 109.46838 * 60.00273 * 1 2 3 32 32 H 1.08996 * 109.46755 * 65.00062 * 4 2 1 33 33 H 1.09006 * 109.46822 * 305.00484 * 4 2 1 34 34 H 0.97002 * 120.00754 * 0.02562 * 5 4 2 35 35 H 1.08996 * 109.47199 * 60.00583 * 8 6 5 36 36 H 1.08998 * 109.47728 * 300.00457 * 8 6 5 37 37 H 1.08996 * 109.46755 * 60.00113 * 9 8 6 38 38 H 1.08995 * 109.47108 * 300.00161 * 9 8 6 39 39 H 1.08004 * 119.96194 * 0.02562 * 11 10 9 40 40 H 1.07995 * 120.03780 * 179.97438 * 12 11 10 41 41 H 1.08996 * 109.46708 * 89.99900 * 15 14 13 42 42 H 1.08998 * 109.47572 * 210.00685 * 15 14 13 43 43 H 1.09002 * 109.46472 * 330.00187 * 15 14 13 44 44 H 1.08998 * 109.47576 * 89.99599 * 16 14 13 45 45 H 1.08997 * 109.47056 * 209.99863 * 16 14 13 46 46 H 1.09004 * 109.46899 * 329.99653 * 16 14 13 47 47 H 1.08005 * 120.04074 * 179.74834 * 17 13 12 48 48 H 1.07997 * 119.96451 * 180.23453 * 18 17 13 49 49 H 1.08994 * 109.47326 * 94.30530 * 20 19 2 50 50 H 1.08994 * 109.47648 * 214.31486 * 20 19 2 51 51 H 1.09007 * 109.46768 * 334.31227 * 20 19 2 52 52 H 0.97003 * 119.99626 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 3.5000 -0.8265 -1.1905 6 6 4.1730 -1.4293 -2.1907 7 8 3.5699 -1.8843 -3.1395 8 6 5.6749 -1.5370 -2.1305 9 6 6.1849 -2.2584 -3.3798 10 6 7.6868 -2.3667 -3.3193 11 6 8.2757 -3.4676 -2.7248 12 6 9.6518 -3.5703 -2.6681 13 6 10.4444 -2.5657 -3.2088 14 7 11.8364 -2.6661 -3.1527 15 6 12.4621 -3.8314 -2.5227 16 6 12.6708 -1.6055 -3.7229 17 6 9.8496 -1.4585 -3.8001 18 6 8.4729 -1.3644 -3.8576 19 7 2.0183 -0.6907 1.1962 20 6 1.6644 -2.0932 1.4280 21 6 2.8056 -0.0252 2.0975 22 1 2.7849 1.0538 2.1395 23 6 3.6303 -0.7375 2.9574 24 7 3.8496 -2.0183 2.7485 25 14 4.4290 0.1219 4.4110 26 1 4.0252 1.5509 4.4242 27 1 3.9900 -0.5276 5.6723 28 1 5.9061 0.0255 4.2926 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.7517 -0.1583 -2.1369 33 1 1.6053 -1.7199 -1.2952 34 1 3.9824 -0.4629 -0.4316 35 1 5.9636 -2.0993 -1.2426 36 1 6.1093 -0.5384 -2.0853 37 1 5.8962 -1.6957 -4.2675 38 1 5.7506 -3.2571 -3.4254 39 1 7.6588 -4.2484 -2.3050 40 1 10.1111 -4.4301 -2.2033 41 1 12.6184 -4.6086 -3.2708 42 1 13.4213 -3.5415 -2.0940 43 1 11.8118 -4.2112 -1.7346 44 1 12.8765 -0.8550 -2.9597 45 1 13.6099 -2.0320 -4.0754 46 1 12.1469 -1.1404 -4.5580 47 1 10.4630 -0.6738 -4.2178 48 1 8.0098 -0.5056 -4.3206 49 1 2.4537 -2.7362 1.0389 50 1 1.5486 -2.2667 2.4978 51 1 0.7272 -2.3202 0.9196 52 1 4.4263 -2.5159 3.3491 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700466817.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:50:53 Heat of formation + Delta-G solvation = 11.388480 kcal Electronic energy + Delta-G solvation = -28484.691086 eV Core-core repulsion = 24677.708862 eV Total energy + Delta-G solvation = -3806.982225 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -39.79905 -39.03030 -36.87686 -36.49296 -33.59131 -33.07208 -31.96014 -31.17595 -29.49252 -29.02913 -28.36966 -26.23005 -26.01221 -24.79383 -23.13940 -22.56341 -22.35529 -20.27945 -19.59343 -19.11588 -17.50267 -16.91957 -16.43812 -16.05223 -15.43966 -15.28417 -15.24438 -14.98672 -14.86835 -14.17810 -14.05931 -13.83175 -13.58914 -13.36583 -12.97762 -12.90084 -12.78336 -12.63884 -12.50464 -12.28784 -12.19745 -12.10484 -11.93493 -11.71277 -11.55285 -11.13305 -11.02626 -10.97511 -10.80395 -10.68382 -10.54849 -10.39781 -10.26185 -9.85438 -9.77668 -9.75669 -9.20505 -8.87630 -8.59835 -8.26193 -7.29528 -6.81463 -5.76041 -3.22593 1.48635 1.60362 2.95365 3.28577 3.34097 3.42844 3.43614 3.81623 4.04506 4.44856 4.72415 4.73747 4.94411 5.01502 5.03388 5.11628 5.30850 5.35629 5.37355 5.38613 5.39691 5.41581 5.43160 5.49874 5.63547 5.65049 5.67083 5.76584 5.96058 6.01870 6.05456 6.11896 6.13099 6.19657 6.32237 6.40029 6.41281 6.43074 6.48501 6.71732 6.83155 6.86056 6.87422 6.93081 7.09722 7.24383 7.39818 7.40644 7.73182 7.79494 8.32597 8.34872 8.93206 9.19624 9.83031 10.32565 11.27140 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.011341 B = 0.002641 C = 0.002282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2468.377271 B =10600.414397 C =12264.921690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.158 3.842 3 H 0.067 0.933 4 C 0.108 3.892 5 N -0.702 5.702 6 C 0.509 3.491 7 O -0.568 6.568 8 C -0.134 4.134 9 C -0.054 4.054 10 C -0.132 4.132 11 C -0.066 4.066 12 C -0.194 4.194 13 C 0.204 3.796 14 N -0.643 5.643 15 C 0.095 3.905 16 C 0.095 3.905 17 C -0.196 4.196 18 C -0.069 4.069 19 N -0.594 5.594 20 C 0.164 3.836 21 C -0.259 4.259 22 H 0.068 0.932 23 C 0.005 3.995 24 N -0.901 5.901 25 Si 0.901 3.099 26 H -0.279 1.279 27 H -0.291 1.291 28 H -0.291 1.291 29 H 0.051 0.949 30 H 0.056 0.944 31 H 0.045 0.955 32 H 0.051 0.949 33 H 0.056 0.944 34 H 0.414 0.586 35 H 0.095 0.905 36 H 0.087 0.913 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.122 0.878 40 H 0.120 0.880 41 H 0.045 0.955 42 H 0.063 0.937 43 H 0.069 0.931 44 H 0.046 0.954 45 H 0.063 0.937 46 H 0.068 0.932 47 H 0.119 0.881 48 H 0.120 0.880 49 H 0.029 0.971 50 H 0.041 0.959 51 H -0.002 1.002 52 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.528 -0.335 -12.142 18.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.049 3.951 3 H 0.086 0.914 4 C -0.018 4.018 5 N -0.352 5.352 6 C 0.295 3.705 7 O -0.448 6.448 8 C -0.174 4.174 9 C -0.092 4.092 10 C -0.134 4.134 11 C -0.085 4.085 12 C -0.216 4.216 13 C 0.104 3.896 14 N -0.356 5.356 15 C -0.049 4.049 16 C -0.048 4.048 17 C -0.218 4.218 18 C -0.087 4.087 19 N -0.317 5.317 20 C 0.020 3.980 21 C -0.388 4.388 22 H 0.086 0.914 23 C -0.194 4.194 24 N -0.545 5.545 25 Si 0.731 3.269 26 H -0.204 1.204 27 H -0.217 1.217 28 H -0.218 1.218 29 H 0.070 0.930 30 H 0.075 0.925 31 H 0.064 0.936 32 H 0.069 0.931 33 H 0.074 0.926 34 H 0.251 0.749 35 H 0.113 0.887 36 H 0.106 0.894 37 H 0.091 0.909 38 H 0.093 0.907 39 H 0.140 0.860 40 H 0.138 0.862 41 H 0.064 0.936 42 H 0.082 0.918 43 H 0.088 0.912 44 H 0.064 0.936 45 H 0.082 0.918 46 H 0.086 0.914 47 H 0.137 0.863 48 H 0.138 0.862 49 H 0.047 0.953 50 H 0.060 0.940 51 H 0.016 0.984 52 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 13.389 -0.781 -12.661 18.443 hybrid contribution 0.836 0.467 1.402 1.698 sum 14.225 -0.314 -11.258 18.144 Atomic orbital electron populations 1.22173 0.97599 1.01418 1.00584 1.20645 0.92544 0.95858 0.86056 0.91440 1.21894 0.80490 1.00784 0.98681 1.45889 1.07984 1.58163 1.23201 1.20605 0.89951 0.77595 0.82308 1.90622 1.70725 1.49194 1.34273 1.21627 0.92384 1.02861 1.00501 1.20189 0.89921 1.01769 0.97319 1.19728 0.95590 0.95672 1.02419 1.20862 0.93797 0.97241 0.96551 1.20651 0.93686 1.00131 1.07173 1.17814 0.82755 0.94246 0.94788 1.46259 1.02375 1.22747 1.64199 1.21598 0.98002 0.87856 0.97400 1.21588 0.94570 0.90443 0.98201 1.20618 0.95053 0.98846 1.07325 1.20803 0.92639 0.97750 0.97544 1.43952 1.57823 1.09666 1.20276 1.20742 0.93954 0.84479 0.98868 1.19255 1.16695 0.90955 1.11935 0.91432 1.24979 0.98027 0.96110 1.00293 1.70094 1.39509 1.07304 1.37642 0.86252 0.78828 0.78873 0.82950 1.20429 1.21749 1.21792 0.92980 0.92489 0.93602 0.93092 0.92600 0.74904 0.88698 0.89418 0.90856 0.90702 0.85988 0.86237 0.93622 0.91794 0.91222 0.93563 0.91841 0.91354 0.86328 0.86188 0.95312 0.93980 0.98371 0.93830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.65 9.18 37.16 0.34 -2.31 16 2 C 0.16 3.04 2.87 -67.93 -0.19 2.84 16 3 H 0.07 1.29 7.86 -51.93 -0.41 0.88 16 4 C 0.11 2.05 4.97 -4.04 -0.02 2.03 16 5 N -0.70 -13.54 5.39 -60.29 -0.32 -13.87 16 6 C 0.51 9.54 7.83 -10.99 -0.09 9.45 16 7 O -0.57 -12.08 15.98 5.55 0.09 -11.99 16 8 C -0.13 -2.05 5.68 -27.88 -0.16 -2.21 16 9 C -0.05 -0.77 4.63 -27.88 -0.13 -0.89 16 10 C -0.13 -1.73 5.14 -104.59 -0.54 -2.27 16 11 C -0.07 -0.84 9.69 -39.61 -0.38 -1.23 16 12 C -0.19 -2.33 9.21 -39.38 -0.36 -2.69 16 13 C 0.20 2.40 6.55 -83.79 -0.55 1.85 16 14 N -0.64 -6.19 3.41 -187.55 -0.64 -6.83 16 15 C 0.09 0.70 10.19 59.85 0.61 1.31 16 16 C 0.10 0.68 10.18 59.85 0.61 1.29 16 17 C -0.20 -2.25 9.20 -39.38 -0.36 -2.62 16 18 C -0.07 -0.83 9.69 -39.61 -0.38 -1.21 16 19 N -0.59 -13.75 2.29 -173.48 -0.40 -14.15 16 20 C 0.16 3.92 8.10 59.85 0.49 4.41 16 21 C -0.26 -6.56 9.33 -15.06 -0.14 -6.70 16 22 H 0.07 1.69 7.81 -52.49 -0.41 1.28 16 23 C 0.00 0.12 5.10 -17.43 -0.09 0.04 16 24 N -0.90 -24.68 10.63 55.49 0.59 -24.09 16 25 Si 0.90 20.91 29.57 -169.99 -5.03 15.88 16 26 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 27 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 28 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 29 H 0.05 0.88 6.66 -51.93 -0.35 0.54 16 30 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 33 H 0.06 1.14 7.84 -51.93 -0.41 0.74 16 34 H 0.41 8.41 7.89 -40.82 -0.32 8.09 16 35 H 0.09 1.52 8.14 -51.93 -0.42 1.09 16 36 H 0.09 1.22 8.14 -51.93 -0.42 0.79 16 37 H 0.07 1.03 8.04 -51.93 -0.42 0.62 16 38 H 0.07 1.12 8.04 -51.93 -0.42 0.70 16 39 H 0.12 1.46 8.06 -52.48 -0.42 1.04 16 40 H 0.12 1.23 6.14 -52.49 -0.32 0.91 16 41 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 42 H 0.06 0.37 8.07 -51.93 -0.42 -0.05 16 43 H 0.07 0.53 6.20 -51.93 -0.32 0.20 16 44 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 45 H 0.06 0.34 8.07 -51.93 -0.42 -0.08 16 46 H 0.07 0.46 6.21 -51.93 -0.32 0.14 16 47 H 0.12 1.13 6.15 -52.48 -0.32 0.81 16 48 H 0.12 1.27 8.06 -52.49 -0.42 0.84 16 49 H 0.03 0.75 7.42 -51.93 -0.39 0.37 16 50 H 0.04 1.09 7.20 -51.93 -0.37 0.72 16 51 H 0.00 -0.05 6.43 -51.93 -0.33 -0.38 16 52 H 0.25 6.79 8.31 -40.82 -0.34 6.45 16 LS Contribution 413.60 15.07 6.23 6.23 Total: -1.00 -30.17 413.60 -9.72 -39.88 By element: Atomic # 1 Polarization: 16.73 SS G_CDS: -8.89 Total: 7.84 kcal Atomic # 6 Polarization: 2.43 SS G_CDS: -1.35 Total: 1.08 kcal Atomic # 7 Polarization: -58.16 SS G_CDS: -0.77 Total: -58.93 kcal Atomic # 8 Polarization: -12.08 SS G_CDS: 0.09 Total: -11.99 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.03 Total: 15.88 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -30.17 -9.72 -39.88 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700466817.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.271 kcal (2) G-P(sol) polarization free energy of solvation -30.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.883 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds