Wall clock time and date at job start Tue Mar 31 2020 17:50:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47283 * 2 1 4 4 C 1.53007 * 109.47170 * 239.99903 * 2 1 3 5 5 N 1.46492 * 109.46998 * 185.00318 * 4 2 1 6 6 C 1.34783 * 120.00071 * 179.97438 * 5 4 2 7 7 O 1.21286 * 119.99750 * 0.02562 * 6 5 4 8 8 C 1.50692 * 120.00223 * 179.97438 * 6 5 4 9 9 C 1.53007 * 109.47150 * 180.02562 * 8 6 5 10 10 C 1.50702 * 109.47057 * 180.02562 * 9 8 6 11 11 C 1.38287 * 119.92290 * 90.00081 * 10 9 8 12 12 C 1.38106 * 120.07526 * 179.97438 * 11 10 9 13 13 C 1.38912 * 119.92178 * 0.02562 * 12 11 10 14 14 N 1.39670 * 120.07107 * 179.97438 * 13 12 11 15 15 C 1.46502 * 120.00448 * 359.97438 * 14 13 12 16 16 C 1.46501 * 119.99948 * 180.02562 * 14 13 12 17 17 C 1.38907 * 119.85286 * 0.25210 * 13 12 11 18 18 C 1.38109 * 119.92565 * 359.51897 * 17 13 12 19 19 N 1.46501 * 109.46872 * 120.00137 * 2 1 3 20 20 C 1.46498 * 120.00330 * 60.00101 * 19 2 1 21 21 C 1.36933 * 119.99904 * 239.99506 * 19 2 1 22 22 H 1.08001 * 120.00234 * 21.93968 * 21 19 2 23 23 C 1.38816 * 120.00173 * 201.93594 * 21 19 2 24 24 N 1.31613 * 119.99620 * 12.71993 * 23 21 19 25 25 Si 1.86797 * 120.00135 * 192.71551 * 23 21 19 26 26 H 1.48501 * 109.47179 * 0.02562 * 25 23 21 27 27 H 1.48503 * 109.47082 * 120.00086 * 25 23 21 28 28 H 1.48502 * 109.47305 * 240.00418 * 25 23 21 29 29 H 1.08997 * 109.47283 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46974 * 300.00243 * 1 2 3 31 31 H 1.09000 * 109.46838 * 60.00273 * 1 2 3 32 32 H 1.08996 * 109.46755 * 65.00062 * 4 2 1 33 33 H 1.09006 * 109.46822 * 305.00484 * 4 2 1 34 34 H 0.97002 * 120.00754 * 0.02562 * 5 4 2 35 35 H 1.08996 * 109.47199 * 60.00583 * 8 6 5 36 36 H 1.08998 * 109.47728 * 300.00457 * 8 6 5 37 37 H 1.08996 * 109.46755 * 60.00113 * 9 8 6 38 38 H 1.08995 * 109.47108 * 300.00161 * 9 8 6 39 39 H 1.08004 * 119.96194 * 0.02562 * 11 10 9 40 40 H 1.07995 * 120.03780 * 179.97438 * 12 11 10 41 41 H 1.08996 * 109.46708 * 89.99900 * 15 14 13 42 42 H 1.08998 * 109.47572 * 210.00685 * 15 14 13 43 43 H 1.09002 * 109.46472 * 330.00187 * 15 14 13 44 44 H 1.08998 * 109.47576 * 89.99599 * 16 14 13 45 45 H 1.08997 * 109.47056 * 209.99863 * 16 14 13 46 46 H 1.09004 * 109.46899 * 329.99653 * 16 14 13 47 47 H 1.08005 * 120.04074 * 179.74834 * 17 13 12 48 48 H 1.07997 * 119.96451 * 180.23453 * 18 17 13 49 49 H 1.08994 * 109.47326 * 94.30530 * 20 19 2 50 50 H 1.08994 * 109.47648 * 214.31486 * 20 19 2 51 51 H 1.09007 * 109.46768 * 334.31227 * 20 19 2 52 52 H 0.97003 * 119.99626 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 3.5000 -0.8265 -1.1905 6 6 4.1730 -1.4293 -2.1907 7 8 3.5699 -1.8843 -3.1395 8 6 5.6749 -1.5370 -2.1305 9 6 6.1849 -2.2584 -3.3798 10 6 7.6868 -2.3667 -3.3193 11 6 8.2757 -3.4676 -2.7248 12 6 9.6518 -3.5703 -2.6681 13 6 10.4444 -2.5657 -3.2088 14 7 11.8364 -2.6661 -3.1527 15 6 12.4621 -3.8314 -2.5227 16 6 12.6708 -1.6055 -3.7229 17 6 9.8496 -1.4585 -3.8001 18 6 8.4729 -1.3644 -3.8576 19 7 2.0183 -0.6907 1.1962 20 6 1.6644 -2.0932 1.4280 21 6 2.8056 -0.0252 2.0975 22 1 2.7849 1.0538 2.1395 23 6 3.6303 -0.7375 2.9574 24 7 3.8496 -2.0183 2.7485 25 14 4.4290 0.1219 4.4110 26 1 4.0252 1.5509 4.4242 27 1 3.9900 -0.5276 5.6723 28 1 5.9061 0.0255 4.2926 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.7517 -0.1583 -2.1369 33 1 1.6053 -1.7199 -1.2952 34 1 3.9824 -0.4629 -0.4316 35 1 5.9636 -2.0993 -1.2426 36 1 6.1093 -0.5384 -2.0853 37 1 5.8962 -1.6957 -4.2675 38 1 5.7506 -3.2571 -3.4254 39 1 7.6588 -4.2484 -2.3050 40 1 10.1111 -4.4301 -2.2033 41 1 12.6184 -4.6086 -3.2708 42 1 13.4213 -3.5415 -2.0940 43 1 11.8118 -4.2112 -1.7346 44 1 12.8765 -0.8550 -2.9597 45 1 13.6099 -2.0320 -4.0754 46 1 12.1469 -1.1404 -4.5580 47 1 10.4630 -0.6738 -4.2178 48 1 8.0098 -0.5056 -4.3206 49 1 2.4537 -2.7362 1.0389 50 1 1.5486 -2.2667 2.4978 51 1 0.7272 -2.3202 0.9196 52 1 4.4263 -2.5159 3.3491 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700466817.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:50:52 Heat of formation + Delta-G solvation = -4.188926 kcal Electronic energy + Delta-G solvation = -28485.366573 eV Core-core repulsion = 24677.708862 eV Total energy + Delta-G solvation = -3807.657712 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.85651 -40.36673 -38.41717 -37.48111 -35.30934 -34.20843 -33.65377 -32.03865 -31.14773 -30.17947 -28.98551 -27.98779 -27.45409 -25.87966 -24.86165 -23.69376 -23.23796 -21.28643 -21.09014 -20.67836 -18.81685 -18.34165 -17.82203 -17.15802 -16.97212 -16.79034 -16.32409 -15.94612 -15.91047 -15.78499 -15.16930 -14.94616 -14.76193 -14.56906 -14.41547 -14.32219 -14.05471 -13.73591 -13.63648 -13.47206 -13.41903 -13.12010 -12.92523 -12.85831 -12.82676 -12.74676 -12.58349 -12.45021 -12.25737 -12.11501 -12.05653 -12.03418 -11.71839 -11.53465 -11.45326 -10.84483 -10.59373 -10.49466 -9.84317 -9.79310 -8.75057 -8.10553 -7.75083 -5.22713 0.57173 0.66764 1.48994 1.53291 1.60740 1.77302 2.28210 2.47844 2.55726 2.98387 3.38766 3.67268 3.85979 3.91483 4.07810 4.10385 4.18624 4.21758 4.26059 4.37718 4.44878 4.46065 4.52680 4.60673 4.63600 4.64315 4.70361 4.75532 4.80105 4.85840 4.86840 4.89679 4.90227 4.91570 5.04906 5.10770 5.21392 5.24355 5.29875 5.32825 5.40948 5.51092 5.55198 5.67830 5.74397 5.77962 5.89196 5.98537 6.37998 6.38877 6.58274 6.76152 7.20996 7.39066 7.92612 8.38214 9.26620 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.011341 B = 0.002641 C = 0.002282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2468.377271 B =10600.414397 C =12264.921690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.156 3.844 3 H 0.074 0.926 4 C 0.114 3.886 5 N -0.706 5.706 6 C 0.507 3.493 7 O -0.594 6.594 8 C -0.124 4.124 9 C -0.043 4.043 10 C -0.149 4.149 11 C -0.079 4.079 12 C -0.206 4.206 13 C 0.199 3.801 14 N -0.647 5.647 15 C 0.089 3.911 16 C 0.089 3.911 17 C -0.203 4.203 18 C -0.072 4.072 19 N -0.602 5.602 20 C 0.183 3.817 21 C -0.256 4.256 22 H 0.073 0.927 23 C -0.043 4.043 24 N -0.929 5.929 25 Si 0.958 3.042 26 H -0.268 1.268 27 H -0.300 1.300 28 H -0.295 1.295 29 H 0.047 0.953 30 H 0.053 0.947 31 H 0.076 0.924 32 H 0.068 0.932 33 H 0.038 0.962 34 H 0.410 0.590 35 H 0.087 0.913 36 H 0.106 0.894 37 H 0.073 0.927 38 H 0.059 0.941 39 H 0.120 0.880 40 H 0.131 0.869 41 H 0.053 0.947 42 H 0.082 0.918 43 H 0.064 0.936 44 H 0.049 0.951 45 H 0.083 0.917 46 H 0.071 0.929 47 H 0.138 0.862 48 H 0.134 0.866 49 H 0.000 1.000 50 H 0.014 0.986 51 H 0.021 0.979 52 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.559 1.239 -12.849 19.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.049 3.951 3 H 0.092 0.908 4 C -0.013 4.013 5 N -0.355 5.355 6 C 0.294 3.706 7 O -0.476 6.476 8 C -0.164 4.164 9 C -0.081 4.081 10 C -0.151 4.151 11 C -0.097 4.097 12 C -0.228 4.228 13 C 0.097 3.903 14 N -0.359 5.359 15 C -0.054 4.054 16 C -0.053 4.053 17 C -0.225 4.225 18 C -0.090 4.090 19 N -0.325 5.325 20 C 0.038 3.962 21 C -0.386 4.386 22 H 0.091 0.909 23 C -0.239 4.239 24 N -0.575 5.575 25 Si 0.788 3.212 26 H -0.192 1.192 27 H -0.228 1.228 28 H -0.222 1.222 29 H 0.066 0.934 30 H 0.072 0.928 31 H 0.095 0.905 32 H 0.086 0.914 33 H 0.056 0.944 34 H 0.245 0.755 35 H 0.105 0.895 36 H 0.125 0.875 37 H 0.092 0.908 38 H 0.078 0.922 39 H 0.138 0.862 40 H 0.149 0.851 41 H 0.071 0.929 42 H 0.101 0.899 43 H 0.083 0.917 44 H 0.068 0.932 45 H 0.101 0.899 46 H 0.090 0.910 47 H 0.156 0.844 48 H 0.152 0.848 49 H 0.018 0.982 50 H 0.033 0.967 51 H 0.040 0.960 52 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 14.426 0.823 -13.385 19.696 hybrid contribution 0.544 -0.009 1.573 1.664 sum 14.970 0.814 -11.812 19.086 Atomic orbital electron populations 1.22063 0.95189 1.01586 1.02009 1.20839 0.94200 0.95562 0.84481 0.90822 1.21833 0.80347 0.99925 0.99159 1.45984 1.08211 1.58211 1.23087 1.21140 0.91198 0.76645 0.81576 1.90602 1.71580 1.50219 1.35241 1.21602 0.89984 1.03967 1.00814 1.20042 0.90825 1.00657 0.96555 1.19647 0.94822 0.96599 1.04001 1.20971 0.94455 0.97386 0.96928 1.20815 0.93458 1.00939 1.07620 1.18027 0.84010 0.94078 0.94216 1.46552 1.01818 1.23713 1.63862 1.21744 0.98578 0.87548 0.97502 1.21761 0.95060 0.90140 0.98350 1.20862 0.95038 0.99353 1.07220 1.20996 0.93048 0.97815 0.97187 1.44080 1.57650 1.09312 1.21483 1.20401 0.93979 0.84802 0.97052 1.19520 1.15914 0.91268 1.11867 0.90891 1.25592 0.99148 0.96650 1.02538 1.70249 1.40494 1.08493 1.38300 0.85339 0.77561 0.78388 0.79891 1.19243 1.22799 1.22232 0.93421 0.92752 0.90493 0.91357 0.94363 0.75453 0.89496 0.87547 0.90844 0.92180 0.86154 0.85114 0.92876 0.89941 0.91695 0.93220 0.89872 0.91028 0.84402 0.84788 0.98220 0.96696 0.96039 0.94635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.63 9.18 71.98 0.66 -3.97 16 2 C 0.16 5.78 2.87 44.99 0.13 5.91 16 3 H 0.07 2.65 7.86 -2.39 -0.02 2.63 16 4 C 0.11 4.19 4.97 86.38 0.43 4.62 16 5 N -0.71 -27.06 5.39 -463.06 -2.49 -29.56 16 6 C 0.51 19.01 7.83 87.65 0.69 19.70 16 7 O -0.59 -25.37 15.98 -3.05 -0.05 -25.42 16 8 C -0.12 -3.81 5.68 29.85 0.17 -3.64 16 9 C -0.04 -1.22 4.63 29.85 0.14 -1.09 16 10 C -0.15 -3.89 5.14 -19.84 -0.10 -3.99 16 11 C -0.08 -2.05 9.69 22.25 0.22 -1.83 16 12 C -0.21 -4.87 9.21 22.40 0.21 -4.67 16 13 C 0.20 4.43 6.55 38.21 0.25 4.68 16 14 N -0.65 -11.26 3.41 -747.28 -2.55 -13.81 16 15 C 0.09 1.16 10.19 127.77 1.30 2.47 16 16 C 0.09 1.06 10.18 127.77 1.30 2.37 16 17 C -0.20 -4.35 9.20 22.40 0.21 -4.15 16 18 C -0.07 -1.67 9.69 22.25 0.22 -1.45 16 19 N -0.60 -27.57 2.29 -702.78 -1.61 -29.18 16 20 C 0.18 8.83 8.10 127.77 1.04 9.86 16 21 C -0.26 -12.78 9.33 84.04 0.78 -12.00 16 22 H 0.07 3.54 7.81 -2.91 -0.02 3.52 16 23 C -0.04 -2.27 5.10 84.86 0.43 -1.84 16 24 N -0.93 -51.88 10.63 21.65 0.23 -51.65 16 25 Si 0.96 43.05 29.57 68.60 2.03 45.08 16 26 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 27 H -0.30 -13.89 7.11 99.48 0.71 -13.19 16 28 H -0.30 -13.36 7.11 99.48 0.71 -12.65 16 29 H 0.05 1.52 6.66 -2.39 -0.02 1.50 16 30 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 32 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 33 H 0.04 1.55 7.84 -2.38 -0.02 1.53 16 34 H 0.41 16.58 7.89 -92.71 -0.73 15.85 16 35 H 0.09 2.84 8.14 -2.39 -0.02 2.82 16 36 H 0.11 2.86 8.14 -2.39 -0.02 2.84 16 37 H 0.07 2.06 8.04 -2.39 -0.02 2.04 16 38 H 0.06 1.86 8.04 -2.39 -0.02 1.84 16 39 H 0.12 3.03 8.06 -2.91 -0.02 3.00 16 40 H 0.13 2.66 6.14 -2.91 -0.02 2.64 16 41 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 42 H 0.08 0.77 8.07 -2.39 -0.02 0.75 16 43 H 0.06 0.91 6.20 -2.39 -0.01 0.89 16 44 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 45 H 0.08 0.67 8.07 -2.39 -0.02 0.65 16 46 H 0.07 0.80 6.21 -2.38 -0.01 0.79 16 47 H 0.14 2.33 6.15 -2.91 -0.02 2.32 16 48 H 0.13 2.62 8.06 -2.91 -0.02 2.60 16 49 H 0.00 -0.03 7.42 -2.39 -0.02 -0.04 16 50 H 0.01 0.77 7.20 -2.39 -0.02 0.75 16 51 H 0.02 0.91 6.43 -2.38 -0.02 0.90 16 52 H 0.24 13.52 8.31 -92.71 -0.77 12.75 16 Total: -1.00 -64.30 413.60 3.79 -60.51 By element: Atomic # 1 Polarization: 32.89 SS G_CDS: 0.17 Total: 33.05 kcal Atomic # 6 Polarization: 2.91 SS G_CDS: 8.06 Total: 10.97 kcal Atomic # 7 Polarization: -117.78 SS G_CDS: -6.42 Total: -124.20 kcal Atomic # 8 Polarization: -25.37 SS G_CDS: -0.05 Total: -25.42 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.08 kcal Total: -64.30 3.79 -60.51 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700466817.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.322 kcal (2) G-P(sol) polarization free energy of solvation -64.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds