Wall clock time and date at job start Tue Mar 31 2020 17:59:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46496 * 109.47432 * 2 1 4 4 C 1.36452 * 124.85399 * 264.98029 * 3 2 1 5 5 C 1.34480 * 108.85906 * 180.02562 * 4 3 2 6 6 C 1.46685 * 106.33252 * 0.22665 * 5 4 3 7 7 C 1.47272 * 126.94406 * 179.75693 * 6 5 4 8 8 O 1.21625 * 119.99978 * 222.71801 * 7 6 5 9 9 N 1.34769 * 120.00137 * 42.70837 * 7 6 5 10 10 C 1.46934 * 120.62990 * 4.92083 * 9 7 6 11 11 C 1.53192 * 108.77822 * 126.36544 * 10 9 7 12 12 C 1.53036 * 109.31023 * 54.63131 * 11 10 9 13 13 C 1.53043 * 109.54430 * 298.63838 * 12 11 10 14 14 H 1.08996 * 109.49553 * 301.41352 * 13 12 11 15 15 C 1.52992 * 109.50055 * 181.34891 * 13 12 11 16 16 N 1.46504 * 109.47310 * 174.99874 * 15 13 12 17 17 C 1.46500 * 119.99910 * 269.99835 * 16 15 13 18 18 C 1.36935 * 119.99955 * 89.99965 * 16 15 13 19 19 H 1.07999 * 120.00062 * 17.94100 * 18 16 15 20 20 C 1.38816 * 119.99925 * 197.94458 * 18 16 15 21 21 N 1.31609 * 119.99874 * 16.82212 * 20 18 16 22 22 Si 1.86804 * 119.99560 * 196.82440 * 20 18 16 23 23 H 1.48499 * 109.47202 * 94.98262 * 22 20 18 24 24 H 1.48499 * 109.46665 * 214.97761 * 22 20 18 25 25 H 1.48493 * 109.47182 * 334.97540 * 22 20 18 26 26 C 1.46921 * 120.63318 * 184.63771 * 9 7 6 27 27 C 1.34657 * 124.85432 * 84.99880 * 3 2 1 28 28 C 1.50709 * 125.79901 * 0.02562 * 27 3 2 29 29 H 1.09000 * 109.47328 * 59.99643 * 1 2 3 30 30 H 1.09001 * 109.47178 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46417 * 300.00003 * 1 2 3 32 32 H 1.09005 * 109.47051 * 240.00386 * 2 1 3 33 33 H 1.09000 * 109.47328 * 120.00357 * 2 1 3 34 34 H 1.07999 * 125.57020 * 0.03881 * 4 3 2 35 35 H 1.08002 * 126.83930 * 179.97438 * 5 4 3 36 36 H 1.09001 * 109.58591 * 246.15066 * 10 9 7 37 37 H 1.08998 * 109.58588 * 6.43317 * 10 9 7 38 38 H 1.08991 * 109.49896 * 174.58649 * 11 10 9 39 39 H 1.09004 * 109.49542 * 294.68875 * 11 10 9 40 40 H 1.09005 * 109.45939 * 58.66010 * 12 11 10 41 41 H 1.09002 * 109.46225 * 178.61880 * 12 11 10 42 42 H 1.08999 * 109.47339 * 294.99938 * 15 13 12 43 43 H 1.09003 * 109.47544 * 54.99847 * 15 13 12 44 44 H 1.09004 * 109.46658 * 94.48452 * 17 16 15 45 45 H 1.08995 * 109.47333 * 214.48097 * 17 16 15 46 46 H 1.08998 * 109.47494 * 334.48534 * 17 16 15 47 47 H 0.97002 * 119.99853 * 179.97438 * 21 20 18 48 48 H 1.09001 * 109.58437 * 353.41902 * 26 9 7 49 49 H 1.08995 * 109.59142 * 113.84694 * 26 9 7 50 50 H 1.08996 * 109.46995 * 89.99326 * 28 27 3 51 51 H 1.08999 * 109.47155 * 209.99950 * 28 27 3 52 52 H 1.09006 * 109.46618 * 329.99584 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.3707 2.0837 -1.1154 5 6 2.7717 3.3131 -0.7463 6 6 2.6591 3.3620 0.7155 7 6 2.9881 4.4997 1.5909 8 8 3.5901 4.3125 2.6310 9 7 2.6221 5.7482 1.2396 10 6 1.8023 5.9791 0.0422 11 6 0.5709 6.7996 0.4384 12 6 1.0217 8.0785 1.1477 13 6 1.7896 7.7146 2.4205 14 1 1.1508 7.1196 3.0731 15 6 2.2107 8.9939 3.1463 16 7 2.8402 8.6465 4.4228 17 6 2.0231 8.5214 5.6323 18 6 4.1923 8.4389 4.4853 19 1 4.8316 8.8024 3.6944 20 6 4.7412 7.7611 5.5653 21 7 3.9701 7.0376 6.3489 22 14 6.5742 7.8762 5.9062 23 1 6.8260 8.9470 6.9038 24 1 7.0608 6.5785 6.4396 25 1 7.2930 8.1942 4.6464 26 6 3.0301 6.9039 2.0498 27 6 2.1841 2.1388 1.1008 28 6 1.9013 1.7092 2.5174 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3632 0.5139 0.8900 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 2.3335 1.7130 -2.1292 35 1 3.1129 4.1053 -1.3962 36 1 2.3840 6.5276 -0.6987 37 1 1.4879 5.0226 -0.3753 38 1 0.0041 7.0597 -0.4554 39 1 -0.0564 6.2131 1.1098 40 1 1.6690 8.6526 0.4847 41 1 0.1483 8.6761 1.4089 42 1 2.9205 9.5449 2.5293 43 1 1.3327 9.6129 3.3308 44 1 1.7428 7.4777 5.7749 45 1 2.5950 8.8649 6.4943 46 1 1.1237 9.1281 5.5277 47 1 4.3537 6.5637 7.1034 48 1 3.5234 6.5575 2.9580 49 1 3.7139 7.5294 1.4761 50 1 2.7984 1.2646 2.9482 51 1 1.6060 2.5765 3.1080 52 1 1.0949 0.9758 2.5205 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713133057.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:59:06 Heat of formation + Delta-G solvation = 33.641223 kcal Electronic energy + Delta-G solvation = -30398.928040 eV Core-core repulsion = 26592.910767 eV Total energy + Delta-G solvation = -3806.017274 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.41359 -39.26642 -37.06434 -35.29660 -34.26217 -32.63926 -31.59855 -31.31198 -30.15052 -29.31019 -26.58248 -25.84369 -25.49494 -24.87967 -23.63594 -22.29210 -21.64646 -20.53941 -19.83741 -19.14291 -18.01062 -17.06435 -16.51880 -16.03947 -15.35850 -15.20005 -14.69587 -14.67934 -14.42889 -14.16601 -13.75004 -13.53540 -13.48012 -13.22494 -13.01599 -12.99886 -12.74112 -12.69139 -12.45409 -12.36440 -12.21496 -12.00086 -11.87394 -11.65460 -11.44272 -11.35710 -11.13271 -10.77236 -10.70886 -10.56519 -10.40716 -10.17988 -10.00332 -9.79393 -9.77320 -9.50709 -9.19350 -8.47359 -8.32556 -8.10485 -7.88768 -6.61667 -5.55401 -2.94635 2.06129 2.53351 2.73896 3.52070 3.58564 3.59256 3.61096 3.85814 4.35083 4.62601 4.67418 4.69503 4.86728 4.91575 5.09839 5.16516 5.21774 5.25474 5.27434 5.31637 5.45170 5.60311 5.61892 5.66291 5.68776 5.70118 5.71767 5.91586 5.93218 6.01631 6.02404 6.09530 6.17615 6.23121 6.33994 6.37467 6.44416 6.52475 6.68079 6.77658 6.84940 6.87659 7.10202 7.17596 7.26405 7.29861 7.34896 7.53266 7.86443 7.98100 8.13523 8.54775 8.93397 9.40755 10.05776 10.53084 11.50529 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.013116 B = 0.003644 C = 0.003206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2134.290574 B = 7682.983950 C = 8732.521396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.098 3.902 3 N -0.444 5.444 4 C -0.021 4.021 5 C -0.168 4.168 6 C -0.217 4.217 7 C 0.582 3.418 8 O -0.528 6.528 9 N -0.606 5.606 10 C 0.106 3.894 11 C -0.131 4.131 12 C -0.115 4.115 13 C -0.118 4.118 14 H 0.064 0.936 15 C 0.159 3.841 16 N -0.602 5.602 17 C 0.165 3.835 18 C -0.253 4.253 19 H 0.068 0.932 20 C 0.006 3.994 21 N -0.899 5.899 22 Si 0.898 3.102 23 H -0.291 1.291 24 H -0.292 1.292 25 H -0.280 1.280 26 C 0.126 3.874 27 C 0.089 3.911 28 C -0.088 4.088 29 H 0.063 0.937 30 H 0.073 0.927 31 H 0.064 0.936 32 H 0.090 0.910 33 H 0.088 0.912 34 H 0.163 0.837 35 H 0.143 0.857 36 H 0.058 0.942 37 H 0.089 0.911 38 H 0.064 0.936 39 H 0.061 0.939 40 H 0.058 0.942 41 H 0.057 0.943 42 H 0.043 0.957 43 H 0.038 0.962 44 H 0.025 0.975 45 H 0.045 0.955 46 H -0.006 1.006 47 H 0.250 0.750 48 H 0.122 0.878 49 H 0.050 0.950 50 H 0.079 0.921 51 H 0.087 0.913 52 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.125 -11.632 -17.465 23.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.024 4.024 3 N -0.122 5.122 4 C -0.147 4.147 5 C -0.192 4.192 6 C -0.227 4.227 7 C 0.370 3.630 8 O -0.405 6.405 9 N -0.339 5.339 10 C -0.017 4.017 11 C -0.170 4.170 12 C -0.153 4.153 13 C -0.141 4.141 14 H 0.082 0.918 15 C 0.031 3.969 16 N -0.324 5.324 17 C 0.020 3.980 18 C -0.382 4.382 19 H 0.086 0.914 20 C -0.193 4.193 21 N -0.544 5.544 22 Si 0.728 3.272 23 H -0.218 1.218 24 H -0.219 1.219 25 H -0.205 1.205 26 C 0.005 3.995 27 C -0.026 4.026 28 C -0.145 4.145 29 H 0.082 0.918 30 H 0.092 0.908 31 H 0.083 0.917 32 H 0.108 0.892 33 H 0.107 0.893 34 H 0.180 0.820 35 H 0.161 0.839 36 H 0.076 0.924 37 H 0.107 0.893 38 H 0.083 0.917 39 H 0.080 0.920 40 H 0.076 0.924 41 H 0.075 0.925 42 H 0.061 0.939 43 H 0.057 0.943 44 H 0.043 0.957 45 H 0.063 0.937 46 H 0.013 0.987 47 H 0.061 0.939 48 H 0.140 0.860 49 H 0.069 0.931 50 H 0.097 0.903 51 H 0.106 0.894 52 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -9.847 -12.156 -16.744 22.915 hybrid contribution 0.919 -0.097 -0.055 0.925 sum -8.929 -12.252 -16.799 22.629 Atomic orbital electron populations 1.22188 0.94375 1.02908 1.03391 1.21835 0.95529 0.80726 1.04320 1.43621 1.51054 1.11698 1.05801 1.21591 1.08710 0.93299 0.91091 1.21962 1.07078 0.97165 0.93034 1.20267 1.14066 0.94775 0.93601 1.17466 0.79016 0.81890 0.84630 1.90869 1.40799 1.84362 1.24435 1.48062 1.52258 1.06643 1.26959 1.21793 0.91765 1.00687 0.87492 1.21889 0.97387 0.97482 1.00225 1.21590 0.99746 0.96416 0.97547 1.22147 0.96581 1.00043 0.95307 0.91751 1.20817 0.95501 0.92821 0.87747 1.43992 1.04625 1.81538 1.02274 1.20764 0.90694 0.97655 0.88844 1.19115 0.82201 1.30283 1.06636 0.91395 1.24847 0.97321 0.97466 0.99646 1.70099 1.33839 1.31648 1.18831 0.86327 0.85979 0.76821 0.78033 1.21836 1.21890 1.20534 1.21656 0.95956 0.85152 0.96721 1.20167 1.02742 0.90497 0.89192 1.20423 1.01835 1.02677 0.89610 0.91795 0.90808 0.91656 0.89150 0.89330 0.81995 0.83909 0.92416 0.89309 0.91749 0.92029 0.92365 0.92460 0.93874 0.94324 0.95664 0.93651 0.98741 0.93947 0.85976 0.93142 0.90263 0.89445 0.92032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.02 10.24 37.16 0.38 -0.64 16 2 C 0.10 0.67 6.21 -4.04 -0.03 0.64 16 3 N -0.44 -4.80 2.69 -112.52 -0.30 -5.10 16 4 C -0.02 -0.22 11.33 -16.82 -0.19 -0.41 16 5 C -0.17 -2.15 8.75 -37.50 -0.33 -2.48 16 6 C -0.22 -3.55 5.22 -103.35 -0.54 -4.09 16 7 C 0.58 11.87 7.26 -12.59 -0.09 11.78 16 8 O -0.53 -13.37 16.01 5.26 0.08 -13.29 16 9 N -0.61 -11.28 2.98 -174.36 -0.52 -11.80 16 10 C 0.11 1.48 5.68 -3.71 -0.02 1.46 16 11 C -0.13 -1.73 6.08 -26.61 -0.16 -1.89 16 12 C -0.11 -1.69 5.17 -26.69 -0.14 -1.83 16 13 C -0.12 -2.29 2.53 -90.72 -0.23 -2.52 16 14 H 0.06 1.41 8.14 -51.93 -0.42 0.99 16 15 C 0.16 3.33 5.22 -4.04 -0.02 3.31 16 16 N -0.60 -15.50 2.82 -181.12 -0.51 -16.01 16 17 C 0.17 4.25 9.03 59.85 0.54 4.79 16 18 C -0.25 -7.12 7.80 -15.06 -0.12 -7.24 16 19 H 0.07 1.89 7.87 -52.49 -0.41 1.47 16 20 C 0.01 0.17 5.03 -17.43 -0.09 0.09 16 21 N -0.90 -27.51 10.64 55.49 0.59 -26.92 16 22 Si 0.90 23.24 29.59 -169.99 -5.03 18.21 16 23 H -0.29 -7.44 7.11 56.52 0.40 -7.03 16 24 H -0.29 -7.74 7.11 56.52 0.40 -7.34 16 25 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 26 C 0.13 2.68 5.07 -3.93 -0.02 2.66 16 27 C 0.09 1.26 6.89 -81.88 -0.56 0.70 16 28 C -0.09 -1.17 9.36 36.01 0.34 -0.84 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.47 7.52 -51.93 -0.39 0.08 16 32 H 0.09 0.44 8.11 -51.93 -0.42 0.02 16 33 H 0.09 0.56 7.74 -51.93 -0.40 0.16 16 34 H 0.16 1.13 8.06 -52.49 -0.42 0.70 16 35 H 0.14 1.62 7.68 -52.49 -0.40 1.21 16 36 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.09 1.15 4.86 -51.93 -0.25 0.90 16 38 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.04 0.88 8.03 -51.93 -0.42 0.46 16 43 H 0.04 0.74 7.86 -51.93 -0.41 0.33 16 44 H 0.03 0.71 7.50 -51.93 -0.39 0.32 16 45 H 0.04 1.25 7.05 -51.93 -0.37 0.88 16 46 H -0.01 -0.13 7.84 -51.93 -0.41 -0.54 16 47 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 48 H 0.12 3.30 5.60 -51.93 -0.29 3.01 16 49 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 50 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 51 H 0.09 1.39 7.79 -51.93 -0.40 0.98 16 52 H 0.06 0.61 7.06 -51.93 -0.37 0.25 16 LS Contribution 403.18 15.07 6.08 6.08 Total: -1.00 -35.11 403.18 -10.01 -45.12 By element: Atomic # 1 Polarization: 9.34 SS G_CDS: -9.12 Total: 0.22 kcal Atomic # 6 Polarization: 4.78 SS G_CDS: -1.28 Total: 3.50 kcal Atomic # 7 Polarization: -59.09 SS G_CDS: -0.74 Total: -59.83 kcal Atomic # 8 Polarization: -13.37 SS G_CDS: 0.08 Total: -13.29 kcal Atomic # 14 Polarization: 23.24 SS G_CDS: -5.03 Total: 18.21 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -35.11 -10.01 -45.12 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713133057.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.760 kcal (2) G-P(sol) polarization free energy of solvation -35.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.118 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds