Wall clock time and date at job start Tue Mar 31 2020 17:59:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46496 * 109.47432 * 2 1 4 4 C 1.36452 * 124.85399 * 264.98029 * 3 2 1 5 5 C 1.34480 * 108.85906 * 180.02562 * 4 3 2 6 6 C 1.46685 * 106.33252 * 0.22665 * 5 4 3 7 7 C 1.47272 * 126.94406 * 179.75693 * 6 5 4 8 8 O 1.21625 * 119.99978 * 222.71801 * 7 6 5 9 9 N 1.34769 * 120.00137 * 42.70837 * 7 6 5 10 10 C 1.46934 * 120.62990 * 4.92083 * 9 7 6 11 11 C 1.53192 * 108.77822 * 126.36544 * 10 9 7 12 12 C 1.53036 * 109.31023 * 54.63131 * 11 10 9 13 13 C 1.53043 * 109.54430 * 298.63838 * 12 11 10 14 14 H 1.08996 * 109.49553 * 301.41352 * 13 12 11 15 15 C 1.52992 * 109.50055 * 181.34891 * 13 12 11 16 16 N 1.46504 * 109.47310 * 174.99874 * 15 13 12 17 17 C 1.46500 * 119.99910 * 269.99835 * 16 15 13 18 18 C 1.36935 * 119.99955 * 89.99965 * 16 15 13 19 19 H 1.07999 * 120.00062 * 17.94100 * 18 16 15 20 20 C 1.38816 * 119.99925 * 197.94458 * 18 16 15 21 21 N 1.31609 * 119.99874 * 16.82212 * 20 18 16 22 22 Si 1.86804 * 119.99560 * 196.82440 * 20 18 16 23 23 H 1.48499 * 109.47202 * 94.98262 * 22 20 18 24 24 H 1.48499 * 109.46665 * 214.97761 * 22 20 18 25 25 H 1.48493 * 109.47182 * 334.97540 * 22 20 18 26 26 C 1.46921 * 120.63318 * 184.63771 * 9 7 6 27 27 C 1.34657 * 124.85432 * 84.99880 * 3 2 1 28 28 C 1.50709 * 125.79901 * 0.02562 * 27 3 2 29 29 H 1.09000 * 109.47328 * 59.99643 * 1 2 3 30 30 H 1.09001 * 109.47178 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46417 * 300.00003 * 1 2 3 32 32 H 1.09005 * 109.47051 * 240.00386 * 2 1 3 33 33 H 1.09000 * 109.47328 * 120.00357 * 2 1 3 34 34 H 1.07999 * 125.57020 * 0.03881 * 4 3 2 35 35 H 1.08002 * 126.83930 * 179.97438 * 5 4 3 36 36 H 1.09001 * 109.58591 * 246.15066 * 10 9 7 37 37 H 1.08998 * 109.58588 * 6.43317 * 10 9 7 38 38 H 1.08991 * 109.49896 * 174.58649 * 11 10 9 39 39 H 1.09004 * 109.49542 * 294.68875 * 11 10 9 40 40 H 1.09005 * 109.45939 * 58.66010 * 12 11 10 41 41 H 1.09002 * 109.46225 * 178.61880 * 12 11 10 42 42 H 1.08999 * 109.47339 * 294.99938 * 15 13 12 43 43 H 1.09003 * 109.47544 * 54.99847 * 15 13 12 44 44 H 1.09004 * 109.46658 * 94.48452 * 17 16 15 45 45 H 1.08995 * 109.47333 * 214.48097 * 17 16 15 46 46 H 1.08998 * 109.47494 * 334.48534 * 17 16 15 47 47 H 0.97002 * 119.99853 * 179.97438 * 21 20 18 48 48 H 1.09001 * 109.58437 * 353.41902 * 26 9 7 49 49 H 1.08995 * 109.59142 * 113.84694 * 26 9 7 50 50 H 1.08996 * 109.46995 * 89.99326 * 28 27 3 51 51 H 1.08999 * 109.47155 * 209.99950 * 28 27 3 52 52 H 1.09006 * 109.46618 * 329.99584 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.3707 2.0837 -1.1154 5 6 2.7717 3.3131 -0.7463 6 6 2.6591 3.3620 0.7155 7 6 2.9881 4.4997 1.5909 8 8 3.5901 4.3125 2.6310 9 7 2.6221 5.7482 1.2396 10 6 1.8023 5.9791 0.0422 11 6 0.5709 6.7996 0.4384 12 6 1.0217 8.0785 1.1477 13 6 1.7896 7.7146 2.4205 14 1 1.1508 7.1196 3.0731 15 6 2.2107 8.9939 3.1463 16 7 2.8402 8.6465 4.4228 17 6 2.0231 8.5214 5.6323 18 6 4.1923 8.4389 4.4853 19 1 4.8316 8.8024 3.6944 20 6 4.7412 7.7611 5.5653 21 7 3.9701 7.0376 6.3489 22 14 6.5742 7.8762 5.9062 23 1 6.8260 8.9470 6.9038 24 1 7.0608 6.5785 6.4396 25 1 7.2930 8.1942 4.6464 26 6 3.0301 6.9039 2.0498 27 6 2.1841 2.1388 1.1008 28 6 1.9013 1.7092 2.5174 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3632 0.5139 0.8900 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 2.3335 1.7130 -2.1292 35 1 3.1129 4.1053 -1.3962 36 1 2.3840 6.5276 -0.6987 37 1 1.4879 5.0226 -0.3753 38 1 0.0041 7.0597 -0.4554 39 1 -0.0564 6.2131 1.1098 40 1 1.6690 8.6526 0.4847 41 1 0.1483 8.6761 1.4089 42 1 2.9205 9.5449 2.5293 43 1 1.3327 9.6129 3.3308 44 1 1.7428 7.4777 5.7749 45 1 2.5950 8.8649 6.4943 46 1 1.1237 9.1281 5.5277 47 1 4.3537 6.5637 7.1034 48 1 3.5234 6.5575 2.9580 49 1 3.7139 7.5294 1.4761 50 1 2.7984 1.2646 2.9482 51 1 1.6060 2.5765 3.1080 52 1 1.0949 0.9758 2.5205 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713133057.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:59:05 Heat of formation + Delta-G solvation = 12.394099 kcal Electronic energy + Delta-G solvation = -30399.849385 eV Core-core repulsion = 26592.910767 eV Total energy + Delta-G solvation = -3806.938618 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.39545 -40.71409 -38.69766 -37.15059 -35.08190 -34.24643 -33.01108 -32.62524 -31.82263 -30.25611 -27.95692 -27.81968 -27.14145 -26.15668 -24.47435 -23.91812 -22.81063 -22.09712 -21.09197 -20.46860 -19.20542 -18.66991 -18.09983 -17.24729 -16.82351 -16.70306 -16.29628 -15.80391 -15.64237 -15.42562 -15.35791 -15.01469 -14.80652 -14.66765 -14.30497 -14.13722 -13.95700 -13.89836 -13.74489 -13.65322 -13.55482 -13.13778 -13.01893 -12.99540 -12.83341 -12.70573 -12.51493 -12.45870 -12.24802 -12.09904 -12.03596 -11.96886 -11.82098 -11.57841 -11.51924 -11.20492 -10.78044 -10.54307 -9.56713 -9.36171 -9.05834 -8.76630 -7.79769 -5.19266 0.90440 1.41045 1.43673 1.51478 1.57111 1.86739 2.22125 2.47320 2.53169 3.35225 3.69109 3.77944 3.82376 3.92841 3.99666 4.06417 4.09016 4.14505 4.21074 4.25815 4.36161 4.43029 4.45336 4.54091 4.59100 4.65910 4.73508 4.81008 4.82280 4.87091 4.88599 4.89735 4.95493 4.97783 5.05544 5.09830 5.10773 5.16826 5.25112 5.26055 5.29728 5.36006 5.53719 5.58687 5.67499 5.74510 5.76660 5.83307 6.15645 6.34659 6.44179 6.67764 7.18871 7.41189 7.93504 8.34973 9.25276 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.013116 B = 0.003644 C = 0.003206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2134.290574 B = 7682.983950 C = 8732.521396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.089 3.911 3 N -0.435 5.435 4 C 0.005 3.995 5 C -0.183 4.183 6 C -0.255 4.255 7 C 0.571 3.429 8 O -0.600 6.600 9 N -0.606 5.606 10 C 0.102 3.898 11 C -0.126 4.126 12 C -0.106 4.106 13 C -0.106 4.106 14 H 0.027 0.973 15 C 0.154 3.846 16 N -0.617 5.617 17 C 0.181 3.819 18 C -0.243 4.243 19 H 0.071 0.929 20 C -0.056 4.056 21 N -0.935 5.935 22 Si 0.955 3.045 23 H -0.281 1.281 24 H -0.306 1.306 25 H -0.269 1.269 26 C 0.135 3.865 27 C 0.078 3.922 28 C -0.083 4.083 29 H 0.065 0.935 30 H 0.096 0.904 31 H 0.046 0.954 32 H 0.122 0.878 33 H 0.092 0.908 34 H 0.210 0.790 35 H 0.157 0.843 36 H 0.081 0.919 37 H 0.104 0.896 38 H 0.108 0.892 39 H 0.044 0.956 40 H 0.077 0.923 41 H 0.077 0.923 42 H 0.054 0.946 43 H 0.065 0.935 44 H -0.011 1.011 45 H 0.019 0.981 46 H 0.032 0.968 47 H 0.241 0.759 48 H 0.055 0.945 49 H 0.055 0.945 50 H 0.070 0.930 51 H 0.048 0.952 52 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.711 -12.014 -22.193 27.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.031 4.031 3 N -0.111 5.111 4 C -0.122 4.122 5 C -0.206 4.206 6 C -0.265 4.265 7 C 0.362 3.638 8 O -0.482 6.482 9 N -0.337 5.337 10 C -0.019 4.019 11 C -0.164 4.164 12 C -0.144 4.144 13 C -0.128 4.128 14 H 0.046 0.954 15 C 0.028 3.972 16 N -0.340 5.340 17 C 0.036 3.964 18 C -0.373 4.373 19 H 0.089 0.911 20 C -0.250 4.250 21 N -0.583 5.583 22 Si 0.784 3.216 23 H -0.208 1.208 24 H -0.233 1.233 25 H -0.193 1.193 26 C 0.012 3.988 27 C -0.039 4.039 28 C -0.140 4.140 29 H 0.084 0.916 30 H 0.115 0.885 31 H 0.065 0.935 32 H 0.140 0.860 33 H 0.110 0.890 34 H 0.226 0.774 35 H 0.174 0.826 36 H 0.099 0.901 37 H 0.122 0.878 38 H 0.127 0.873 39 H 0.063 0.937 40 H 0.096 0.904 41 H 0.096 0.904 42 H 0.073 0.927 43 H 0.083 0.917 44 H 0.007 0.993 45 H 0.038 0.962 46 H 0.050 0.950 47 H 0.051 0.949 48 H 0.074 0.926 49 H 0.074 0.926 50 H 0.089 0.911 51 H 0.067 0.933 52 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -11.480 -12.509 -21.561 27.443 hybrid contribution 1.342 -0.034 1.306 1.872 sum -10.138 -12.543 -20.255 25.892 Atomic orbital electron populations 1.22159 0.93483 1.04180 1.02550 1.22229 0.96208 0.78514 1.06154 1.43910 1.49615 1.12816 1.04762 1.22268 1.05423 0.92024 0.92491 1.22113 1.08534 0.99071 0.90919 1.20142 1.16956 0.94236 0.95194 1.18258 0.77863 0.83398 0.84272 1.90815 1.44188 1.85496 1.27734 1.48166 1.52221 1.05451 1.27878 1.22140 0.91759 1.02194 0.85822 1.21889 0.96924 0.96087 1.01484 1.21537 1.00050 0.97738 0.95061 1.21913 0.95543 0.98136 0.97212 0.95395 1.21072 0.96464 0.93757 0.85909 1.44256 1.04274 1.81276 1.04198 1.20474 0.91556 0.96028 0.88389 1.19370 0.83635 1.28459 1.05881 0.91132 1.25581 1.01084 0.98056 1.00314 1.70282 1.35196 1.33323 1.19457 0.85411 0.81756 0.76159 0.78251 1.20776 1.23316 1.19316 1.21253 0.96718 0.86157 0.94674 1.20134 1.02942 0.90623 0.90186 1.20311 1.02577 1.01782 0.89352 0.91626 0.88499 0.93475 0.85972 0.88982 0.77370 0.82567 0.90058 0.87815 0.87335 0.93687 0.90432 0.90436 0.92744 0.91703 0.99266 0.96180 0.94952 0.94937 0.92628 0.92648 0.91123 0.93298 0.88570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.42 10.24 71.98 0.74 -0.69 16 2 C 0.09 0.90 6.21 86.38 0.54 1.44 16 3 N -0.43 -8.25 2.69 -509.91 -1.37 -9.62 16 4 C 0.00 0.08 11.33 83.11 0.94 1.02 16 5 C -0.18 -4.28 8.75 23.62 0.21 -4.07 16 6 C -0.26 -8.51 5.22 -19.04 -0.10 -8.60 16 7 C 0.57 25.00 7.26 86.62 0.63 25.63 16 8 O -0.60 -33.74 16.01 -4.11 -0.07 -33.80 16 9 N -0.61 -23.35 2.98 -823.79 -2.45 -25.80 16 10 C 0.10 2.66 5.68 86.36 0.49 3.15 16 11 C -0.13 -2.94 6.08 30.67 0.19 -2.75 16 12 C -0.11 -2.81 5.17 30.62 0.16 -2.65 16 13 C -0.11 -4.14 2.53 -10.86 -0.03 -4.17 16 14 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 15 C 0.15 6.37 5.22 86.38 0.45 6.82 16 16 N -0.62 -32.79 2.82 -726.94 -2.05 -34.83 16 17 C 0.18 9.69 9.03 127.77 1.15 10.85 16 18 C -0.24 -14.21 7.80 84.03 0.66 -13.55 16 19 H 0.07 4.01 7.87 -2.91 -0.02 3.99 16 20 C -0.06 -3.42 5.03 84.86 0.43 -2.99 16 21 N -0.94 -61.18 10.64 21.65 0.23 -60.95 16 22 Si 0.95 49.98 29.59 68.60 2.03 52.01 16 23 H -0.28 -14.12 7.11 99.48 0.71 -13.41 16 24 H -0.31 -16.54 7.11 99.48 0.71 -15.83 16 25 H -0.27 -13.37 7.11 99.48 0.71 -12.66 16 26 C 0.13 5.99 5.07 86.22 0.44 6.42 16 27 C 0.08 2.23 6.89 41.78 0.29 2.52 16 28 C -0.08 -2.36 9.36 71.24 0.67 -1.70 16 29 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.10 0.41 8.14 -2.39 -0.02 0.39 16 31 H 0.05 0.59 7.52 -2.39 -0.02 0.57 16 32 H 0.12 0.55 8.11 -2.38 -0.02 0.53 16 33 H 0.09 0.91 7.74 -2.39 -0.02 0.89 16 34 H 0.21 1.55 8.06 -2.91 -0.02 1.53 16 35 H 0.16 3.10 7.68 -2.91 -0.02 3.07 16 36 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 37 H 0.10 2.44 4.86 -2.39 -0.01 2.43 16 38 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 39 H 0.04 1.21 8.14 -2.39 -0.02 1.20 16 40 H 0.08 1.83 8.14 -2.38 -0.02 1.81 16 41 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 42 H 0.05 2.13 8.03 -2.39 -0.02 2.11 16 43 H 0.06 2.34 7.86 -2.39 -0.02 2.33 16 44 H -0.01 -0.66 7.50 -2.38 -0.02 -0.68 16 45 H 0.02 1.14 7.05 -2.39 -0.02 1.12 16 46 H 0.03 1.45 7.84 -2.39 -0.02 1.43 16 47 H 0.24 15.54 8.31 -92.71 -0.77 14.77 16 48 H 0.06 3.26 5.60 -2.39 -0.01 3.25 16 49 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 50 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 51 H 0.05 1.75 7.79 -2.39 -0.02 1.73 16 52 H 0.10 1.94 7.06 -2.38 -0.02 1.92 16 Total: -1.00 -87.45 403.18 5.04 -82.42 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: 0.88 Total: 13.91 kcal Atomic # 6 Polarization: 8.84 SS G_CDS: 7.84 Total: 16.67 kcal Atomic # 7 Polarization: -125.57 SS G_CDS: -5.64 Total: -131.21 kcal Atomic # 8 Polarization: -33.74 SS G_CDS: -0.07 Total: -33.80 kcal Atomic # 14 Polarization: 49.98 SS G_CDS: 2.03 Total: 52.01 kcal Total: -87.45 5.04 -82.42 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713133057.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.811 kcal (2) G-P(sol) polarization free energy of solvation -87.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.417 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds