Wall clock time and date at job start Tue Mar 31 2020 17:27:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.47032 * 2 1 4 4 C 1.52992 * 109.47716 * 239.99149 * 2 1 3 5 5 C 1.50708 * 109.46855 * 64.99798 * 4 2 1 6 6 O 1.21271 * 119.99854 * 359.73221 * 5 4 2 7 7 N 1.34774 * 119.99822 * 180.02562 * 5 4 2 8 8 C 1.46924 * 120.63188 * 359.72350 * 7 5 4 9 9 C 1.53186 * 108.78044 * 233.58631 * 8 7 5 10 10 C 1.53045 * 109.31180 * 305.36779 * 9 8 7 11 11 C 1.53036 * 109.53899 * 61.36540 * 10 9 8 12 12 H 1.08998 * 109.50091 * 58.57904 * 11 10 9 13 13 C 1.52992 * 109.50069 * 178.65158 * 11 10 9 14 14 N 1.46505 * 109.47164 * 294.99814 * 13 11 10 15 15 C 1.46496 * 119.99975 * 89.99545 * 14 13 11 16 16 C 1.36934 * 119.99775 * 269.99878 * 14 13 11 17 17 H 1.08003 * 120.00099 * 21.08787 * 16 14 13 18 18 C 1.38813 * 119.99747 * 201.08272 * 16 14 13 19 19 N 1.31620 * 120.00011 * 13.23283 * 18 16 14 20 20 Si 1.86802 * 119.99899 * 193.22741 * 18 16 14 21 21 H 1.48495 * 109.47192 * 0.02562 * 20 18 16 22 22 H 1.48508 * 109.46858 * 120.00270 * 20 18 16 23 23 H 1.48497 * 109.47339 * 240.00233 * 20 18 16 24 24 C 1.46927 * 120.62949 * 179.44786 * 7 5 4 25 25 N 1.46505 * 109.46829 * 119.99063 * 2 1 3 26 26 C 1.36338 * 125.63512 * 59.70035 * 25 2 1 27 27 C 1.34852 * 108.22186 * 179.83015 * 26 25 2 28 28 C 1.40896 * 107.41109 * 0.42204 * 27 26 25 29 29 C 1.34842 * 107.42165 * 359.73593 * 28 27 26 30 30 H 1.08997 * 109.47151 * 60.00906 * 1 2 3 31 31 H 1.09005 * 109.46839 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47215 * 300.00715 * 1 2 3 33 33 H 1.08998 * 109.47446 * 305.00472 * 4 2 1 34 34 H 1.09000 * 109.47356 * 185.00058 * 4 2 1 35 35 H 1.09003 * 109.59287 * 353.37832 * 8 7 5 36 36 H 1.09008 * 109.58590 * 113.80024 * 8 7 5 37 37 H 1.08996 * 109.49568 * 65.31788 * 9 8 7 38 38 H 1.08997 * 109.50123 * 185.38576 * 9 8 7 39 39 H 1.09002 * 109.45978 * 181.38092 * 10 9 8 40 40 H 1.09001 * 109.46175 * 301.34042 * 10 9 8 41 41 H 1.09003 * 109.47603 * 54.99558 * 13 11 10 42 42 H 1.09003 * 109.47547 * 174.99863 * 13 11 10 43 43 H 1.09006 * 109.47023 * 95.22111 * 15 14 13 44 44 H 1.09000 * 109.47384 * 215.21790 * 15 14 13 45 45 H 1.09000 * 109.47503 * 335.22451 * 15 14 13 46 46 H 0.97003 * 119.99720 * 179.97438 * 19 18 16 47 47 H 1.08997 * 109.58408 * 246.20044 * 24 7 5 48 48 H 1.09001 * 109.58438 * 6.62522 * 24 7 5 49 49 H 1.08007 * 125.89187 * 359.95520 * 26 25 2 50 50 H 1.07993 * 126.29649 * 180.15919 * 27 26 25 51 51 H 1.08003 * 126.28990 * 179.74226 * 28 27 26 52 52 H 1.08003 * 125.89497 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7214 -1.2490 5 6 1.6414 0.0568 -2.4765 6 8 1.0072 1.0842 -2.3636 7 7 1.9846 -0.3923 -3.7000 8 6 2.7526 -1.6355 -3.8529 9 6 3.9936 -1.3473 -4.7034 10 6 3.5636 -0.7074 -6.0255 11 6 2.8517 0.6179 -5.7451 12 1 3.5210 1.2818 -5.1980 13 6 2.4520 1.2730 -7.0687 14 7 3.6577 1.6323 -7.8194 15 6 4.2509 0.6738 -8.7550 16 6 4.2302 2.8642 -7.6464 17 1 4.0285 3.4324 -6.7503 18 6 5.0699 3.3825 -8.6227 19 7 5.1150 2.8265 -9.8148 20 14 6.1357 4.8693 -8.2445 21 1 5.9019 5.3026 -6.8436 22 1 7.5661 4.5102 -8.4190 23 1 5.7869 5.9768 -9.1703 24 6 1.5928 0.3489 -4.9066 25 7 2.0183 -0.6904 1.1963 26 6 1.7559 -1.9866 1.5281 27 6 2.3798 -2.2584 2.6923 28 6 3.0439 -1.0842 3.0989 29 6 2.8054 -0.1414 2.1649 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8899 33 1 1.6055 -1.7199 -1.2949 34 1 3.1264 -0.7996 -1.2053 35 1 3.0583 -1.9993 -2.8719 36 1 2.1369 -2.3868 -4.3477 37 1 4.6522 -0.6648 -4.1662 38 1 4.5214 -2.2794 -4.9045 39 1 4.4429 -0.5237 -6.6429 40 1 2.8854 -1.3800 -6.5508 41 1 1.8544 0.5743 -7.6541 42 1 1.8679 2.1711 -6.8678 43 1 3.8836 0.8738 -9.7617 44 1 5.3362 0.7733 -8.7378 45 1 3.9741 -0.3389 -8.4619 46 1 5.7015 3.1890 -10.4971 47 1 0.8846 -0.2438 -5.4856 48 1 1.1331 1.2951 -4.6210 49 1 1.1540 -2.6772 0.9561 50 1 2.3687 -3.2013 3.2187 51 1 3.6355 -0.9617 3.9942 52 1 3.1745 0.8735 2.1808 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713135908.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:27:45 Heat of formation + Delta-G solvation = 19.038479 kcal Electronic energy + Delta-G solvation = -29328.640348 eV Core-core repulsion = 25521.989852 eV Total energy + Delta-G solvation = -3806.650496 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.19992 -41.23078 -39.11992 -37.24219 -35.99701 -34.49239 -32.96791 -32.15599 -30.71847 -29.60747 -29.16089 -28.17465 -27.19997 -26.08517 -24.04719 -23.52703 -22.55385 -21.43529 -21.17757 -20.44481 -19.67762 -18.79036 -18.62423 -17.45198 -17.18704 -16.78929 -16.67334 -15.83190 -15.62187 -15.60662 -15.27848 -15.08049 -14.94525 -14.58139 -14.51716 -14.43963 -14.03100 -13.92534 -13.68032 -13.57237 -13.26951 -13.11315 -12.93705 -12.92008 -12.82790 -12.76156 -12.60463 -12.36397 -12.33643 -12.12756 -12.07050 -12.01341 -11.84171 -11.65250 -11.52828 -11.19356 -10.85327 -10.62519 -9.63716 -9.49880 -9.01369 -8.75703 -7.83605 -5.30167 1.40801 1.41564 1.43260 1.53176 1.54755 1.76159 2.20471 2.24211 2.48733 3.28353 3.43595 3.51047 3.67042 3.76349 3.87053 4.00226 4.07861 4.10346 4.19903 4.28458 4.41198 4.42645 4.43685 4.46565 4.53183 4.58450 4.67445 4.68764 4.76495 4.81622 4.84080 4.86649 4.89054 4.94439 4.95643 5.00019 5.20054 5.21139 5.24623 5.36614 5.45289 5.49000 5.49472 5.55485 5.57985 5.62107 5.75185 6.15028 6.31544 6.38395 6.41570 6.54067 7.10802 7.15555 7.89332 8.30250 9.18706 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.017253 B = 0.002404 C = 0.002303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1622.517489 B =11644.501380 C =12153.076442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.151 3.849 3 H 0.090 0.910 4 C -0.138 4.138 5 C 0.515 3.485 6 O -0.579 6.579 7 N -0.606 5.606 8 C 0.107 3.893 9 C -0.130 4.130 10 C -0.108 4.108 11 C -0.105 4.105 12 H 0.036 0.964 13 C 0.155 3.845 14 N -0.615 5.615 15 C 0.180 3.820 16 C -0.255 4.255 17 H 0.062 0.938 18 C -0.055 4.055 19 N -0.938 5.938 20 Si 0.963 3.037 21 H -0.272 1.272 22 H -0.289 1.289 23 H -0.291 1.291 24 C 0.126 3.874 25 N -0.443 5.443 26 C -0.016 4.016 27 C -0.222 4.222 28 C -0.219 4.219 29 C -0.032 4.032 30 H 0.078 0.922 31 H 0.073 0.927 32 H 0.057 0.943 33 H 0.128 0.872 34 H 0.109 0.891 35 H 0.108 0.892 36 H 0.094 0.906 37 H 0.047 0.953 38 H 0.097 0.903 39 H 0.049 0.951 40 H 0.072 0.928 41 H 0.056 0.944 42 H 0.034 0.966 43 H -0.002 1.002 44 H 0.012 0.988 45 H 0.041 0.959 46 H 0.247 0.753 47 H 0.085 0.915 48 H 0.068 0.932 49 H 0.181 0.819 50 H 0.145 0.855 51 H 0.140 0.860 52 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.398 -15.974 20.925 27.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.049 3.951 3 H 0.109 0.891 4 C -0.178 4.178 5 C 0.304 3.696 6 O -0.459 6.459 7 N -0.338 5.338 8 C -0.015 4.015 9 C -0.168 4.168 10 C -0.145 4.145 11 C -0.126 4.126 12 H 0.055 0.945 13 C 0.028 3.972 14 N -0.338 5.338 15 C 0.035 3.965 16 C -0.385 4.385 17 H 0.079 0.921 18 C -0.249 4.249 19 N -0.586 5.586 20 Si 0.792 3.208 21 H -0.197 1.197 22 H -0.216 1.216 23 H -0.218 1.218 24 C 0.002 3.998 25 N -0.119 5.119 26 C -0.145 4.145 27 C -0.246 4.246 28 C -0.244 4.244 29 C -0.162 4.162 30 H 0.096 0.904 31 H 0.092 0.908 32 H 0.076 0.924 33 H 0.146 0.854 34 H 0.127 0.873 35 H 0.126 0.874 36 H 0.112 0.888 37 H 0.066 0.934 38 H 0.115 0.885 39 H 0.068 0.932 40 H 0.091 0.909 41 H 0.074 0.926 42 H 0.052 0.948 43 H 0.016 0.984 44 H 0.030 0.970 45 H 0.060 0.940 46 H 0.057 0.943 47 H 0.104 0.896 48 H 0.086 0.914 49 H 0.198 0.802 50 H 0.162 0.838 51 H 0.158 0.842 52 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -7.764 -15.229 20.530 26.715 hybrid contribution 0.976 1.435 -0.360 1.772 sum -6.787 -13.794 20.171 25.361 Atomic orbital electron populations 1.22186 0.92646 1.03410 1.03368 1.21011 0.96063 0.96150 0.81907 0.89137 1.21971 1.04311 1.01264 0.90219 1.20774 0.78741 0.85071 0.85049 1.90677 1.42156 1.26439 1.86655 1.48225 1.54401 1.25783 1.05359 1.22036 0.92302 0.84803 1.02331 1.21897 0.97534 1.01677 0.95673 1.21528 1.00249 0.95164 0.97573 1.22000 0.96371 0.97494 0.96784 0.94526 1.20833 0.87761 0.97240 0.91319 1.44073 1.28446 1.13108 1.48214 1.20594 0.95562 0.89039 0.91296 1.19448 1.23399 0.95264 1.00422 0.92064 1.25678 1.03046 1.01236 0.94971 1.70243 1.41292 1.43834 1.03196 0.85264 0.78560 0.79467 0.77548 1.19669 1.21616 1.21834 1.21573 0.96107 0.97047 0.85040 1.44393 1.39049 1.10573 1.17904 1.22144 1.06332 0.86264 0.99775 1.21170 1.04994 0.99795 0.98658 1.21154 1.07247 0.94343 1.01655 1.22165 1.01697 1.00497 0.91803 0.90376 0.90767 0.92386 0.85387 0.87270 0.87362 0.88826 0.93409 0.88508 0.93183 0.90901 0.92602 0.94797 0.98385 0.96961 0.94038 0.94326 0.89648 0.91368 0.80175 0.83771 0.84181 0.81544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.65 8.97 71.98 0.65 -2.01 16 2 C 0.15 2.55 2.67 44.99 0.12 2.67 16 3 H 0.09 1.82 7.88 -2.39 -0.02 1.80 16 4 C -0.14 -2.00 3.52 29.85 0.10 -1.89 16 5 C 0.51 11.53 7.42 87.66 0.65 12.18 16 6 O -0.58 -17.50 13.37 -3.00 -0.04 -17.54 16 7 N -0.61 -13.01 2.97 -818.06 -2.43 -15.43 16 8 C 0.11 1.55 6.34 86.36 0.55 2.09 16 9 C -0.13 -2.53 6.08 30.67 0.19 -2.35 16 10 C -0.11 -2.91 4.21 30.62 0.13 -2.78 16 11 C -0.10 -3.37 2.56 -10.57 -0.03 -3.40 16 12 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 13 C 0.16 6.09 5.14 86.38 0.44 6.53 16 14 N -0.62 -30.52 2.75 -726.93 -2.00 -32.52 16 15 C 0.18 8.69 7.87 127.77 1.00 9.69 16 16 C -0.25 -14.23 9.67 84.03 0.81 -13.42 16 17 H 0.06 3.42 7.86 -2.91 -0.02 3.40 16 18 C -0.05 -3.11 5.10 84.86 0.43 -2.68 16 19 N -0.94 -56.07 10.61 21.65 0.23 -55.84 16 20 Si 0.96 46.17 29.57 68.60 2.03 48.20 16 21 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 22 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 23 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 24 C 0.13 3.33 5.75 86.51 0.50 3.83 16 25 N -0.44 -7.50 2.62 -502.00 -1.31 -8.81 16 26 C -0.02 -0.24 10.45 83.21 0.87 0.63 16 27 C -0.22 -3.76 10.86 22.14 0.24 -3.52 16 28 C -0.22 -4.02 10.86 22.14 0.24 -3.78 16 29 C -0.03 -0.59 11.39 83.21 0.95 0.36 16 30 H 0.08 1.65 5.94 -2.39 -0.01 1.63 16 31 H 0.07 0.97 7.91 -2.38 -0.02 0.95 16 32 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.13 1.15 7.87 -2.39 -0.02 1.13 16 34 H 0.11 1.47 7.68 -2.39 -0.02 1.45 16 35 H 0.11 0.99 5.94 -2.39 -0.01 0.97 16 36 H 0.09 1.02 8.14 -2.38 -0.02 1.00 16 37 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 39 H 0.05 1.68 5.87 -2.39 -0.01 1.66 16 40 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 41 H 0.06 1.97 8.07 -2.39 -0.02 1.95 16 42 H 0.03 1.40 8.04 -2.39 -0.02 1.38 16 43 H 0.00 -0.12 7.38 -2.38 -0.02 -0.13 16 44 H 0.01 0.63 7.22 -2.39 -0.02 0.61 16 45 H 0.04 1.64 6.20 -2.39 -0.01 1.62 16 46 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16 47 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 48 H 0.07 2.13 7.00 -2.39 -0.02 2.11 16 49 H 0.18 1.70 8.06 -2.91 -0.02 1.68 16 50 H 0.14 1.96 8.06 -2.91 -0.02 1.94 16 51 H 0.14 2.19 8.06 -2.91 -0.02 2.17 16 52 H 0.17 2.56 8.06 -2.91 -0.02 2.53 16 Total: -1.00 -71.15 400.48 5.20 -65.94 By element: Atomic # 1 Polarization: 12.95 SS G_CDS: 0.88 Total: 13.82 kcal Atomic # 6 Polarization: -5.67 SS G_CDS: 7.85 Total: 2.17 kcal Atomic # 7 Polarization: -107.09 SS G_CDS: -5.51 Total: -112.60 kcal Atomic # 8 Polarization: -17.50 SS G_CDS: -0.04 Total: -17.54 kcal Atomic # 14 Polarization: 46.17 SS G_CDS: 2.03 Total: 48.20 kcal Total: -71.15 5.20 -65.94 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713135908.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.982 kcal (2) G-P(sol) polarization free energy of solvation -71.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.943 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds