Wall clock time and date at job start Tue Mar 31 2020 17:27:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47101 * 2 1 4 4 C 1.52997 * 109.47064 * 239.99704 * 2 1 3 5 5 C 1.50703 * 109.47250 * 65.00075 * 4 2 1 6 6 O 1.21285 * 119.99659 * 359.97438 * 5 4 2 7 7 N 1.34769 * 120.00128 * 179.97438 * 5 4 2 8 8 C 1.46929 * 120.63337 * 0.02562 * 7 5 4 9 9 C 1.53191 * 108.77362 * 126.36536 * 8 7 5 10 10 C 1.53043 * 109.31270 * 54.64044 * 9 8 7 11 11 C 1.53039 * 109.53451 * 298.62819 * 10 9 8 12 12 H 1.08995 * 109.50329 * 301.38170 * 11 10 9 13 13 C 1.53000 * 109.49742 * 181.31894 * 11 10 9 14 14 N 1.46502 * 109.47274 * 64.99730 * 13 11 10 15 15 C 1.46494 * 120.00217 * 270.00496 * 14 13 11 16 16 C 1.36937 * 119.99351 * 90.00253 * 14 13 11 17 17 H 1.07999 * 120.00303 * 21.68961 * 16 14 13 18 18 C 1.38815 * 119.99631 * 201.69142 * 16 14 13 19 19 N 1.31618 * 120.00311 * 11.57392 * 18 16 14 20 20 Si 1.86802 * 119.99694 * 191.58154 * 18 16 14 21 21 H 1.48498 * 109.47448 * 359.97438 * 20 18 16 22 22 H 1.48504 * 109.47036 * 119.99723 * 20 18 16 23 23 H 1.48502 * 109.47000 * 239.99278 * 20 18 16 24 24 C 1.46931 * 120.63075 * 179.72116 * 7 5 4 25 25 N 1.46503 * 109.47112 * 119.99925 * 2 1 3 26 26 C 1.36342 * 125.63752 * 59.69409 * 25 2 1 27 27 C 1.34846 * 108.21766 * 179.83260 * 26 25 2 28 28 C 1.40884 * 107.41912 * 0.42238 * 27 26 25 29 29 C 1.34848 * 107.41817 * 359.73751 * 28 27 26 30 30 H 1.08996 * 109.46970 * 60.00355 * 1 2 3 31 31 H 1.09002 * 109.47101 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47086 * 299.99899 * 1 2 3 33 33 H 1.08999 * 109.47120 * 185.00202 * 4 2 1 34 34 H 1.09001 * 109.47782 * 305.00220 * 4 2 1 35 35 H 1.08995 * 109.58344 * 246.15389 * 8 7 5 36 36 H 1.09002 * 109.58560 * 6.43776 * 8 7 5 37 37 H 1.09001 * 109.49298 * 174.58744 * 9 8 7 38 38 H 1.08991 * 109.50154 * 294.68354 * 9 8 7 39 39 H 1.08995 * 109.46457 * 58.65251 * 10 9 8 40 40 H 1.08998 * 109.45912 * 178.62572 * 10 9 8 41 41 H 1.08996 * 109.47213 * 185.00565 * 13 11 10 42 42 H 1.09002 * 109.46992 * 305.00368 * 13 11 10 43 43 H 1.09000 * 109.47524 * 95.29388 * 15 14 13 44 44 H 1.09004 * 109.46790 * 215.29004 * 15 14 13 45 45 H 1.09002 * 109.47059 * 335.28756 * 15 14 13 46 46 H 0.96998 * 119.99905 * 180.02562 * 19 18 16 47 47 H 1.09007 * 109.58371 * 353.41598 * 24 7 5 48 48 H 1.08993 * 109.59075 * 113.84430 * 24 7 5 49 49 H 1.08009 * 125.88809 * 359.96064 * 26 25 2 50 50 H 1.08005 * 126.29190 * 180.16183 * 27 26 25 51 51 H 1.08001 * 126.29401 * 179.73787 * 28 27 26 52 52 H 1.07996 * 125.89475 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6413 0.0569 -2.4766 6 8 1.0109 1.0869 -2.3633 7 7 1.9853 -0.3915 -3.7001 8 6 2.7484 -1.6377 -3.8534 9 6 1.9971 -2.5603 -4.8183 10 6 1.7374 -1.8169 -6.1306 11 6 0.8654 -0.5888 -5.8591 12 1 -0.0743 -0.9030 -5.4050 13 6 0.5791 0.1354 -7.1761 14 7 -0.2268 -0.7279 -8.0430 15 6 0.4296 -1.6478 -8.9751 16 6 -1.5938 -0.6749 -7.9818 17 1 -2.0830 0.2023 -7.5848 18 6 -2.3507 -1.7487 -8.4301 19 7 -1.7682 -2.8979 -8.6989 20 14 -4.1962 -1.5626 -8.6520 21 1 -4.6023 -0.1824 -8.2842 22 1 -4.5530 -1.8228 -10.0699 23 1 -4.9004 -2.5349 -7.7780 24 6 1.5986 0.3530 -4.9063 25 7 2.0184 -0.6906 1.1962 26 6 1.7560 -1.9868 1.5279 27 6 2.3800 -2.2586 2.6920 28 6 3.0441 -1.0846 3.0987 29 6 2.8055 -0.1416 2.1647 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 3.1263 -0.7996 -1.2055 34 1 1.6054 -1.7199 -1.2952 35 1 3.7362 -1.4140 -4.2562 36 1 2.8509 -2.1250 -2.8838 37 1 2.5986 -3.4476 -5.0158 38 1 1.0470 -2.8560 -4.3735 39 1 2.6866 -1.5000 -6.5624 40 1 1.2244 -2.4793 -6.8278 41 1 0.0339 1.0570 -6.9728 42 1 1.5201 0.3720 -7.6727 43 1 0.5117 -2.6331 -8.5161 44 1 -0.1598 -1.7208 -9.8891 45 1 1.4253 -1.2740 -9.2138 46 1 -2.2971 -3.6481 -9.0125 47 1 0.9405 1.1774 -4.6316 48 1 2.4905 0.7426 -5.3969 49 1 1.1540 -2.6774 0.9558 50 1 2.3688 -3.2017 3.2183 51 1 3.6356 -0.9622 3.9940 52 1 3.1746 0.8732 2.1807 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713135910.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:27:54 Heat of formation + Delta-G solvation = 34.406854 kcal Electronic energy + Delta-G solvation = -29519.790655 eV Core-core repulsion = 25713.806582 eV Total energy + Delta-G solvation = -3805.984073 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.44722 -40.21598 -37.85686 -35.61081 -35.15779 -32.94657 -31.66574 -30.61533 -29.83056 -28.88590 -28.25489 -26.36308 -25.46581 -24.99331 -22.93568 -22.38895 -21.08728 -20.62059 -19.92529 -19.49883 -18.72952 -17.91194 -16.70683 -16.54938 -16.00365 -15.70464 -14.93959 -14.72542 -14.54816 -14.39007 -14.18930 -13.87284 -13.76521 -13.37941 -13.34577 -13.02323 -12.88885 -12.84746 -12.67215 -12.41423 -12.40484 -12.21610 -11.93371 -11.66177 -11.45914 -11.40437 -11.23017 -11.00040 -10.85820 -10.73891 -10.55530 -10.39815 -10.17421 -9.96746 -9.87971 -9.77153 -9.69089 -8.76155 -8.62085 -8.47673 -8.29133 -6.76217 -5.73528 -3.17963 2.14408 2.50556 2.62948 2.93466 3.12530 3.36636 3.44416 3.46240 4.23430 4.37669 4.49609 4.50971 4.79942 4.87056 4.92207 5.07708 5.09086 5.15578 5.19419 5.22902 5.29463 5.40730 5.42246 5.45326 5.48298 5.60406 5.67512 5.70705 5.71888 5.83274 5.94268 6.03574 6.06089 6.11843 6.15370 6.18545 6.21131 6.36628 6.49262 6.65342 6.69542 6.74549 6.86763 6.94567 7.07274 7.12067 7.25207 7.37000 7.39774 7.72949 7.81682 8.09809 8.39081 9.23786 9.86954 10.35139 11.31438 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.016969 B = 0.002527 C = 0.002420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1649.633397 B =11075.594048 C =11568.996507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.149 3.851 3 H 0.106 0.894 4 C -0.151 4.151 5 C 0.519 3.481 6 O -0.543 6.543 7 N -0.603 5.603 8 C 0.106 3.894 9 C -0.133 4.133 10 C -0.112 4.112 11 C -0.120 4.120 12 H 0.074 0.926 13 C 0.159 3.841 14 N -0.599 5.599 15 C 0.165 3.835 16 C -0.249 4.249 17 H 0.068 0.932 18 C 0.000 4.000 19 N -0.909 5.909 20 Si 0.902 3.098 21 H -0.279 1.279 22 H -0.290 1.290 23 H -0.291 1.291 24 C 0.116 3.884 25 N -0.442 5.442 26 C -0.013 4.013 27 C -0.205 4.205 28 C -0.206 4.206 29 C -0.016 4.016 30 H 0.097 0.903 31 H 0.058 0.942 32 H 0.061 0.939 33 H 0.098 0.902 34 H 0.100 0.900 35 H 0.068 0.932 36 H 0.077 0.923 37 H 0.070 0.930 38 H 0.065 0.935 39 H 0.049 0.951 40 H 0.089 0.911 41 H 0.044 0.956 42 H 0.037 0.963 43 H 0.032 0.968 44 H 0.041 0.959 45 H -0.005 1.005 46 H 0.251 0.749 47 H 0.088 0.912 48 H 0.062 0.938 49 H 0.157 0.843 50 H 0.132 0.868 51 H 0.132 0.868 52 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.574 1.830 16.879 21.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.047 3.953 3 H 0.124 0.876 4 C -0.191 4.191 5 C 0.306 3.694 6 O -0.421 6.421 7 N -0.335 5.335 8 C -0.017 4.017 9 C -0.172 4.172 10 C -0.149 4.149 11 C -0.142 4.142 12 H 0.093 0.907 13 C 0.031 3.969 14 N -0.322 5.322 15 C 0.020 3.980 16 C -0.379 4.379 17 H 0.086 0.914 18 C -0.197 4.197 19 N -0.555 5.555 20 Si 0.733 3.267 21 H -0.204 1.204 22 H -0.217 1.217 23 H -0.218 1.218 24 C -0.007 4.007 25 N -0.118 5.118 26 C -0.143 4.143 27 C -0.230 4.230 28 C -0.230 4.230 29 C -0.146 4.146 30 H 0.116 0.884 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.117 0.883 34 H 0.118 0.882 35 H 0.086 0.914 36 H 0.096 0.904 37 H 0.088 0.912 38 H 0.084 0.916 39 H 0.068 0.932 40 H 0.107 0.893 41 H 0.063 0.937 42 H 0.056 0.944 43 H 0.050 0.950 44 H 0.060 0.940 45 H 0.014 0.986 46 H 0.061 0.939 47 H 0.107 0.893 48 H 0.080 0.920 49 H 0.174 0.826 50 H 0.150 0.850 51 H 0.150 0.850 52 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 12.040 2.414 16.516 20.581 hybrid contribution -0.949 -0.352 -0.063 1.014 sum 11.091 2.062 16.453 19.949 Atomic orbital electron populations 1.22294 0.92645 1.02981 1.04525 1.21114 0.96167 0.96510 0.81499 0.87643 1.22029 1.03504 1.00987 0.92591 1.20190 0.79378 0.85548 0.84289 1.90677 1.40384 1.24887 1.86172 1.48160 1.54554 1.24736 1.06029 1.21814 0.94832 0.84625 1.00380 1.21915 1.00573 0.97798 0.96865 1.21590 0.99092 0.97830 0.96379 1.22175 0.98492 0.95778 0.97750 0.90714 1.20786 0.94145 0.93223 0.88758 1.43938 1.02453 1.45311 1.40460 1.20853 0.91301 0.92559 0.93270 1.19260 0.81519 0.98951 1.38159 0.91395 1.24984 0.97851 0.94992 1.01922 1.70061 1.34109 1.01152 1.50206 0.86210 0.85651 0.77445 0.77422 1.20368 1.21676 1.21827 1.21715 0.99454 0.95430 0.84053 1.44394 1.38982 1.10319 1.18065 1.21760 1.06464 0.86341 0.99735 1.20877 1.04713 0.99328 0.98063 1.20868 1.07010 0.93975 1.01171 1.21847 1.01404 0.99734 0.91578 0.88450 0.92285 0.91997 0.88333 0.88161 0.91359 0.90440 0.91188 0.91624 0.93193 0.89295 0.93728 0.94426 0.94984 0.94009 0.98640 0.93916 0.89317 0.92020 0.82552 0.85006 0.85020 0.82467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.77 8.97 37.16 0.33 -1.44 16 2 C 0.15 1.48 2.67 -67.93 -0.18 1.30 16 3 H 0.11 1.07 7.88 -51.93 -0.41 0.66 16 4 C -0.15 -1.44 3.51 -27.88 -0.10 -1.54 16 5 C 0.52 6.69 7.42 -10.99 -0.08 6.61 16 6 O -0.54 -8.61 13.38 5.55 0.07 -8.53 16 7 N -0.60 -7.76 2.98 -173.05 -0.52 -8.28 16 8 C 0.11 1.12 6.35 -3.71 -0.02 1.09 16 9 C -0.13 -1.70 6.08 -26.61 -0.16 -1.87 16 10 C -0.11 -1.78 4.78 -26.69 -0.13 -1.90 16 11 C -0.12 -2.07 2.53 -90.74 -0.23 -2.30 16 12 H 0.07 1.56 8.14 -51.93 -0.42 1.14 16 13 C 0.16 3.10 5.18 -4.04 -0.02 3.08 16 14 N -0.60 -14.45 2.75 -181.12 -0.50 -14.95 16 15 C 0.16 3.88 7.85 59.84 0.47 4.35 16 16 C -0.25 -6.71 9.68 -15.06 -0.15 -6.86 16 17 H 0.07 1.82 7.84 -52.49 -0.41 1.41 16 18 C 0.00 0.01 5.13 -17.43 -0.09 -0.08 16 19 N -0.91 -25.83 10.55 55.49 0.59 -25.24 16 20 Si 0.90 21.80 29.57 -169.99 -5.03 16.78 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 22 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 23 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 24 C 0.12 1.69 5.68 -3.95 -0.02 1.67 16 25 N -0.44 -4.41 2.62 -110.02 -0.29 -4.70 16 26 C -0.01 -0.13 10.45 -16.75 -0.18 -0.30 16 27 C -0.21 -2.08 10.86 -39.78 -0.43 -2.52 16 28 C -0.21 -2.06 10.86 -39.78 -0.43 -2.49 16 29 C -0.02 -0.15 11.39 -16.75 -0.19 -0.34 16 30 H 0.10 1.24 5.95 -51.93 -0.31 0.93 16 31 H 0.06 0.59 7.91 -51.93 -0.41 0.18 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.10 0.83 7.94 -51.93 -0.41 0.42 16 34 H 0.10 0.88 7.61 -51.93 -0.40 0.48 16 35 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.08 0.64 5.93 -51.93 -0.31 0.34 16 37 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.09 1.75 5.46 -51.93 -0.28 1.47 16 41 H 0.04 0.87 8.03 -51.93 -0.42 0.46 16 42 H 0.04 0.67 7.86 -51.93 -0.41 0.26 16 43 H 0.03 0.80 5.88 -51.93 -0.31 0.50 16 44 H 0.04 1.08 7.22 -51.93 -0.38 0.71 16 45 H 0.00 -0.10 7.83 -51.93 -0.41 -0.51 16 46 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 47 H 0.09 1.43 7.01 -51.93 -0.36 1.06 16 48 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 49 H 0.16 1.29 8.06 -52.48 -0.42 0.87 16 50 H 0.13 1.14 8.06 -52.48 -0.42 0.71 16 51 H 0.13 1.10 8.06 -52.49 -0.42 0.67 16 52 H 0.16 1.20 8.06 -52.49 -0.42 0.77 16 LS Contribution 400.45 15.07 6.03 6.03 Total: -1.00 -30.59 400.45 -10.24 -40.83 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: -9.00 Total: 1.59 kcal Atomic # 6 Polarization: -1.93 SS G_CDS: -1.61 Total: -3.53 kcal Atomic # 7 Polarization: -52.45 SS G_CDS: -0.72 Total: -53.17 kcal Atomic # 8 Polarization: -8.61 SS G_CDS: 0.07 Total: -8.53 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.03 Total: 16.78 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -30.59 -10.24 -40.83 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713135910.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.241 kcal (2) G-P(sol) polarization free energy of solvation -30.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.834 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds