Wall clock time and date at job start Tue Mar 31 2020 17:27:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47101 * 2 1 4 4 C 1.52997 * 109.47064 * 239.99704 * 2 1 3 5 5 C 1.50703 * 109.47250 * 65.00075 * 4 2 1 6 6 O 1.21285 * 119.99659 * 359.97438 * 5 4 2 7 7 N 1.34769 * 120.00128 * 179.97438 * 5 4 2 8 8 C 1.46929 * 120.63337 * 0.02562 * 7 5 4 9 9 C 1.53191 * 108.77362 * 126.36536 * 8 7 5 10 10 C 1.53043 * 109.31270 * 54.64044 * 9 8 7 11 11 C 1.53039 * 109.53451 * 298.62819 * 10 9 8 12 12 H 1.08995 * 109.50329 * 301.38170 * 11 10 9 13 13 C 1.53000 * 109.49742 * 181.31894 * 11 10 9 14 14 N 1.46502 * 109.47274 * 64.99730 * 13 11 10 15 15 C 1.46494 * 120.00217 * 270.00496 * 14 13 11 16 16 C 1.36937 * 119.99351 * 90.00253 * 14 13 11 17 17 H 1.07999 * 120.00303 * 21.68961 * 16 14 13 18 18 C 1.38815 * 119.99631 * 201.69142 * 16 14 13 19 19 N 1.31618 * 120.00311 * 11.57392 * 18 16 14 20 20 Si 1.86802 * 119.99694 * 191.58154 * 18 16 14 21 21 H 1.48498 * 109.47448 * 359.97438 * 20 18 16 22 22 H 1.48504 * 109.47036 * 119.99723 * 20 18 16 23 23 H 1.48502 * 109.47000 * 239.99278 * 20 18 16 24 24 C 1.46931 * 120.63075 * 179.72116 * 7 5 4 25 25 N 1.46503 * 109.47112 * 119.99925 * 2 1 3 26 26 C 1.36342 * 125.63752 * 59.69409 * 25 2 1 27 27 C 1.34846 * 108.21766 * 179.83260 * 26 25 2 28 28 C 1.40884 * 107.41912 * 0.42238 * 27 26 25 29 29 C 1.34848 * 107.41817 * 359.73751 * 28 27 26 30 30 H 1.08996 * 109.46970 * 60.00355 * 1 2 3 31 31 H 1.09002 * 109.47101 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47086 * 299.99899 * 1 2 3 33 33 H 1.08999 * 109.47120 * 185.00202 * 4 2 1 34 34 H 1.09001 * 109.47782 * 305.00220 * 4 2 1 35 35 H 1.08995 * 109.58344 * 246.15389 * 8 7 5 36 36 H 1.09002 * 109.58560 * 6.43776 * 8 7 5 37 37 H 1.09001 * 109.49298 * 174.58744 * 9 8 7 38 38 H 1.08991 * 109.50154 * 294.68354 * 9 8 7 39 39 H 1.08995 * 109.46457 * 58.65251 * 10 9 8 40 40 H 1.08998 * 109.45912 * 178.62572 * 10 9 8 41 41 H 1.08996 * 109.47213 * 185.00565 * 13 11 10 42 42 H 1.09002 * 109.46992 * 305.00368 * 13 11 10 43 43 H 1.09000 * 109.47524 * 95.29388 * 15 14 13 44 44 H 1.09004 * 109.46790 * 215.29004 * 15 14 13 45 45 H 1.09002 * 109.47059 * 335.28756 * 15 14 13 46 46 H 0.96998 * 119.99905 * 180.02562 * 19 18 16 47 47 H 1.09007 * 109.58371 * 353.41598 * 24 7 5 48 48 H 1.08993 * 109.59075 * 113.84430 * 24 7 5 49 49 H 1.08009 * 125.88809 * 359.96064 * 26 25 2 50 50 H 1.08005 * 126.29190 * 180.16183 * 27 26 25 51 51 H 1.08001 * 126.29401 * 179.73787 * 28 27 26 52 52 H 1.07996 * 125.89475 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6413 0.0569 -2.4766 6 8 1.0109 1.0869 -2.3633 7 7 1.9853 -0.3915 -3.7001 8 6 2.7484 -1.6377 -3.8534 9 6 1.9971 -2.5603 -4.8183 10 6 1.7374 -1.8169 -6.1306 11 6 0.8654 -0.5888 -5.8591 12 1 -0.0743 -0.9030 -5.4050 13 6 0.5791 0.1354 -7.1761 14 7 -0.2268 -0.7279 -8.0430 15 6 0.4296 -1.6478 -8.9751 16 6 -1.5938 -0.6749 -7.9818 17 1 -2.0830 0.2023 -7.5848 18 6 -2.3507 -1.7487 -8.4301 19 7 -1.7682 -2.8979 -8.6989 20 14 -4.1962 -1.5626 -8.6520 21 1 -4.6023 -0.1824 -8.2842 22 1 -4.5530 -1.8228 -10.0699 23 1 -4.9004 -2.5349 -7.7780 24 6 1.5986 0.3530 -4.9063 25 7 2.0184 -0.6906 1.1962 26 6 1.7560 -1.9868 1.5279 27 6 2.3800 -2.2586 2.6920 28 6 3.0441 -1.0846 3.0987 29 6 2.8055 -0.1416 2.1647 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 3.1263 -0.7996 -1.2055 34 1 1.6054 -1.7199 -1.2952 35 1 3.7362 -1.4140 -4.2562 36 1 2.8509 -2.1250 -2.8838 37 1 2.5986 -3.4476 -5.0158 38 1 1.0470 -2.8560 -4.3735 39 1 2.6866 -1.5000 -6.5624 40 1 1.2244 -2.4793 -6.8278 41 1 0.0339 1.0570 -6.9728 42 1 1.5201 0.3720 -7.6727 43 1 0.5117 -2.6331 -8.5161 44 1 -0.1598 -1.7208 -9.8891 45 1 1.4253 -1.2740 -9.2138 46 1 -2.2971 -3.6481 -9.0125 47 1 0.9405 1.1774 -4.6316 48 1 2.4905 0.7426 -5.3969 49 1 1.1540 -2.6774 0.9558 50 1 2.3688 -3.2017 3.2183 51 1 3.6356 -0.9622 3.9940 52 1 3.1746 0.8732 2.1807 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713135910.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:27:53 Heat of formation + Delta-G solvation = 19.618305 kcal Electronic energy + Delta-G solvation = -29520.431935 eV Core-core repulsion = 25713.806582 eV Total energy + Delta-G solvation = -3806.625353 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.20422 -41.23643 -39.11234 -37.23467 -36.00409 -34.45516 -32.97809 -32.18217 -30.72861 -29.60699 -29.17893 -28.13817 -27.17908 -26.09358 -24.04083 -23.53578 -22.56296 -21.41132 -21.15256 -20.42644 -19.70605 -18.78561 -18.66132 -17.49258 -17.10296 -16.73324 -16.63339 -15.93268 -15.62293 -15.53460 -15.46792 -15.08660 -14.96364 -14.52261 -14.47606 -14.38123 -14.02598 -13.87185 -13.72093 -13.58867 -13.21615 -13.11203 -12.96977 -12.92658 -12.83984 -12.77729 -12.60720 -12.36883 -12.25022 -12.15221 -12.07315 -11.99972 -11.88564 -11.59616 -11.48968 -11.16326 -10.85895 -10.61466 -9.63945 -9.50343 -9.01494 -8.74170 -7.82532 -5.28061 1.40866 1.42049 1.44225 1.52573 1.53596 1.77572 2.20412 2.23869 2.49722 3.30819 3.43883 3.50158 3.70594 3.72882 3.88291 4.01400 4.08134 4.09188 4.19520 4.30966 4.40813 4.43432 4.43902 4.45702 4.53132 4.58836 4.67384 4.68583 4.74477 4.82556 4.84282 4.87269 4.88148 4.92844 4.93879 4.99369 5.16980 5.23114 5.28122 5.37686 5.45270 5.48229 5.48942 5.57030 5.60151 5.66256 5.84859 6.15094 6.33967 6.38525 6.41682 6.53126 7.10072 7.17449 7.90616 8.31885 9.20147 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.016969 B = 0.002527 C = 0.002420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1649.633397 B =11075.594048 C =11568.996507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.155 3.845 3 H 0.103 0.897 4 C -0.139 4.139 5 C 0.515 3.485 6 O -0.578 6.578 7 N -0.606 5.606 8 C 0.109 3.891 9 C -0.128 4.128 10 C -0.107 4.107 11 C -0.105 4.105 12 H 0.028 0.972 13 C 0.155 3.845 14 N -0.614 5.614 15 C 0.181 3.819 16 C -0.256 4.256 17 H 0.063 0.937 18 C -0.052 4.052 19 N -0.934 5.934 20 Si 0.960 3.040 21 H -0.271 1.271 22 H -0.290 1.290 23 H -0.294 1.294 24 C 0.126 3.874 25 N -0.443 5.443 26 C -0.022 4.022 27 C -0.220 4.220 28 C -0.219 4.219 29 C -0.025 4.025 30 H 0.074 0.926 31 H 0.063 0.937 32 H 0.061 0.939 33 H 0.121 0.879 34 H 0.114 0.886 35 H 0.093 0.907 36 H 0.108 0.892 37 H 0.092 0.908 38 H 0.042 0.958 39 H 0.071 0.929 40 H 0.046 0.954 41 H 0.038 0.962 42 H 0.064 0.936 43 H 0.013 0.987 44 H 0.009 0.991 45 H 0.029 0.971 46 H 0.246 0.754 47 H 0.069 0.931 48 H 0.085 0.915 49 H 0.171 0.829 50 H 0.142 0.858 51 H 0.144 0.856 52 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.677 1.848 18.216 23.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.053 3.947 3 H 0.121 0.879 4 C -0.179 4.179 5 C 0.304 3.696 6 O -0.458 6.458 7 N -0.338 5.338 8 C -0.012 4.012 9 C -0.167 4.167 10 C -0.144 4.144 11 C -0.127 4.127 12 H 0.047 0.953 13 C 0.028 3.972 14 N -0.337 5.337 15 C 0.036 3.964 16 C -0.386 4.386 17 H 0.081 0.919 18 C -0.246 4.246 19 N -0.581 5.581 20 Si 0.789 3.211 21 H -0.196 1.196 22 H -0.217 1.217 23 H -0.221 1.221 24 C 0.003 3.997 25 N -0.119 5.119 26 C -0.152 4.152 27 C -0.245 4.245 28 C -0.244 4.244 29 C -0.155 4.155 30 H 0.092 0.908 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.139 0.861 34 H 0.132 0.868 35 H 0.111 0.889 36 H 0.126 0.874 37 H 0.111 0.889 38 H 0.061 0.939 39 H 0.090 0.910 40 H 0.065 0.935 41 H 0.056 0.944 42 H 0.082 0.918 43 H 0.032 0.968 44 H 0.028 0.972 45 H 0.047 0.953 46 H 0.056 0.944 47 H 0.087 0.913 48 H 0.104 0.896 49 H 0.188 0.812 50 H 0.160 0.840 51 H 0.161 0.839 52 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 14.172 2.440 17.876 22.942 hybrid contribution -1.582 -0.310 -0.451 1.674 sum 12.590 2.130 17.425 21.603 Atomic orbital electron populations 1.22202 0.93548 1.02901 1.03331 1.20984 0.95373 0.96540 0.81838 0.87925 1.21974 1.04831 1.00692 0.90387 1.20758 0.78501 0.85297 0.85059 1.90672 1.41827 1.26643 1.86695 1.48236 1.54663 1.25441 1.05435 1.21999 0.94805 0.82997 1.01443 1.21862 1.00368 0.98902 0.95526 1.21485 0.98988 0.96484 0.97487 1.21856 0.97230 0.96834 0.96794 0.95315 1.20952 0.94490 0.92286 0.89467 1.44120 1.02102 1.45745 1.41732 1.20593 0.92144 0.92040 0.91574 1.19483 0.83238 0.98607 1.37293 0.91941 1.25652 1.01507 0.94948 1.02541 1.70208 1.35081 1.01541 1.51309 0.85300 0.81337 0.77439 0.76982 1.19608 1.21655 1.22101 1.21427 0.99660 0.94165 0.84459 1.44387 1.39112 1.10377 1.18031 1.22063 1.06579 0.86537 0.99982 1.21158 1.04908 0.99965 0.98422 1.21153 1.07321 0.94114 1.01788 1.22227 1.01240 1.00596 0.91396 0.90754 0.91799 0.92006 0.86118 0.86829 0.88901 0.87436 0.88909 0.93892 0.91020 0.93478 0.94351 0.91799 0.96848 0.97199 0.95288 0.94443 0.91269 0.89638 0.81179 0.84011 0.83860 0.80759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.33 8.97 71.98 0.65 -2.68 16 2 C 0.16 2.79 2.67 44.99 0.12 2.91 16 3 H 0.10 1.93 7.88 -2.39 -0.02 1.91 16 4 C -0.14 -2.26 3.51 29.85 0.10 -2.15 16 5 C 0.51 12.41 7.42 87.66 0.65 13.06 16 6 O -0.58 -18.14 13.38 -3.04 -0.04 -18.18 16 7 N -0.61 -14.28 2.98 -819.80 -2.44 -16.72 16 8 C 0.11 1.88 6.35 86.36 0.55 2.43 16 9 C -0.13 -3.02 6.08 30.67 0.19 -2.83 16 10 C -0.11 -3.29 4.78 30.62 0.15 -3.15 16 11 C -0.11 -3.64 2.53 -10.87 -0.03 -3.66 16 12 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 13 C 0.15 6.00 5.18 86.38 0.45 6.44 16 14 N -0.61 -30.09 2.75 -726.94 -2.00 -32.09 16 15 C 0.18 8.66 7.85 127.77 1.00 9.66 16 16 C -0.26 -14.11 9.68 84.03 0.81 -13.29 16 17 H 0.06 3.44 7.84 -2.91 -0.02 3.42 16 18 C -0.05 -2.90 5.13 84.86 0.44 -2.46 16 19 N -0.93 -54.63 10.55 21.65 0.23 -54.41 16 20 Si 0.96 45.77 29.57 68.60 2.03 47.80 16 21 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 22 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 23 H -0.29 -14.03 7.11 99.48 0.71 -13.33 16 24 C 0.13 3.53 5.68 86.20 0.49 4.02 16 25 N -0.44 -7.87 2.62 -501.99 -1.31 -9.19 16 26 C -0.02 -0.39 10.45 83.21 0.87 0.48 16 27 C -0.22 -4.05 10.86 22.14 0.24 -3.81 16 28 C -0.22 -3.98 10.86 22.14 0.24 -3.74 16 29 C -0.03 -0.44 11.39 83.21 0.95 0.51 16 30 H 0.07 1.91 5.95 -2.39 -0.01 1.90 16 31 H 0.06 1.22 7.91 -2.39 -0.02 1.20 16 32 H 0.06 1.24 8.14 -2.38 -0.02 1.22 16 33 H 0.12 1.50 7.94 -2.39 -0.02 1.48 16 34 H 0.11 1.60 7.61 -2.39 -0.02 1.59 16 35 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.11 1.27 5.93 -2.39 -0.01 1.25 16 37 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 38 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 40 H 0.05 1.87 5.46 -2.39 -0.01 1.86 16 41 H 0.04 1.51 8.03 -2.39 -0.02 1.49 16 42 H 0.06 2.14 7.86 -2.39 -0.02 2.12 16 43 H 0.01 0.69 5.88 -2.39 -0.01 0.68 16 44 H 0.01 0.50 7.22 -2.38 -0.02 0.48 16 45 H 0.03 1.16 7.83 -2.39 -0.02 1.14 16 46 H 0.25 14.05 8.31 -92.71 -0.77 13.27 16 47 H 0.07 2.23 7.01 -2.38 -0.02 2.21 16 48 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 49 H 0.17 2.39 8.06 -2.91 -0.02 2.37 16 50 H 0.14 2.19 8.06 -2.91 -0.02 2.17 16 51 H 0.14 2.13 8.06 -2.91 -0.02 2.11 16 52 H 0.18 2.27 8.06 -2.91 -0.02 2.25 16 Total: -1.00 -68.96 400.45 5.20 -63.76 By element: Atomic # 1 Polarization: 16.41 SS G_CDS: 0.88 Total: 17.29 kcal Atomic # 6 Polarization: -6.12 SS G_CDS: 7.86 Total: 1.74 kcal Atomic # 7 Polarization: -106.88 SS G_CDS: -5.53 Total: -112.41 kcal Atomic # 8 Polarization: -18.14 SS G_CDS: -0.04 Total: -18.18 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 2.03 Total: 47.80 kcal Total: -68.96 5.20 -63.76 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713135910.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.377 kcal (2) G-P(sol) polarization free energy of solvation -68.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.759 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds