Wall clock time and date at job start Tue Mar 31 2020 17:27:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.46849 * 2 1 4 4 C 1.52999 * 109.46919 * 119.99740 * 2 1 3 5 5 C 1.50702 * 109.47621 * 295.00179 * 4 2 1 6 6 O 1.21283 * 119.99394 * 359.97438 * 5 4 2 7 7 N 1.34771 * 120.00191 * 180.02562 * 5 4 2 8 8 C 1.46923 * 120.63408 * 359.97438 * 7 5 4 9 9 C 1.53187 * 108.77462 * 126.37055 * 8 7 5 10 10 C 1.53041 * 109.31438 * 54.63689 * 9 8 7 11 11 C 1.53037 * 109.53995 * 298.63509 * 10 9 8 12 12 H 1.08998 * 109.49877 * 301.37992 * 11 10 9 13 13 C 1.52993 * 109.49950 * 181.31174 * 11 10 9 14 14 N 1.46500 * 109.46885 * 65.00312 * 13 11 10 15 15 C 1.46503 * 119.99821 * 269.99875 * 14 13 11 16 16 C 1.36936 * 120.00265 * 89.99815 * 14 13 11 17 17 H 1.08002 * 119.99810 * 21.69158 * 16 14 13 18 18 C 1.38812 * 120.00117 * 201.68442 * 16 14 13 19 19 N 1.31620 * 119.99920 * 11.58231 * 18 16 14 20 20 Si 1.86802 * 119.99938 * 191.58144 * 18 16 14 21 21 H 1.48497 * 109.47074 * 359.97438 * 20 18 16 22 22 H 1.48496 * 109.47142 * 120.00560 * 20 18 16 23 23 H 1.48508 * 109.47018 * 240.00126 * 20 18 16 24 24 C 1.46931 * 120.62868 * 179.71896 * 7 5 4 25 25 N 1.46494 * 109.47271 * 239.99961 * 2 1 3 26 26 C 1.36342 * 125.63601 * 299.69223 * 25 2 1 27 27 C 1.34852 * 108.21953 * 180.26488 * 26 25 2 28 28 C 1.40885 * 107.41811 * 359.97438 * 27 26 25 29 29 C 1.34856 * 107.41623 * 0.02562 * 28 27 26 30 30 H 1.09004 * 109.47562 * 299.99879 * 1 2 3 31 31 H 1.09003 * 109.47228 * 60.00286 * 1 2 3 32 32 H 1.09001 * 109.46849 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47376 * 55.00224 * 4 2 1 34 34 H 1.09006 * 109.46978 * 175.00238 * 4 2 1 35 35 H 1.08994 * 109.59120 * 246.16392 * 8 7 5 36 36 H 1.09001 * 109.58509 * 6.44374 * 8 7 5 37 37 H 1.09000 * 109.49913 * 174.58832 * 9 8 7 38 38 H 1.09010 * 109.50045 * 294.68816 * 9 8 7 39 39 H 1.08999 * 109.45525 * 58.65689 * 10 9 8 40 40 H 1.09003 * 109.46189 * 178.62810 * 10 9 8 41 41 H 1.09007 * 109.47277 * 184.99918 * 13 11 10 42 42 H 1.08995 * 109.47649 * 305.00397 * 13 11 10 43 43 H 1.09002 * 109.46921 * 95.29513 * 15 14 13 44 44 H 1.09004 * 109.47324 * 215.29308 * 15 14 13 45 45 H 1.09000 * 109.46981 * 335.29127 * 15 14 13 46 46 H 0.97004 * 119.99728 * 179.97438 * 19 18 16 47 47 H 1.08996 * 109.58482 * 353.42186 * 24 7 5 48 48 H 1.09005 * 109.58439 * 113.84230 * 24 7 5 49 49 H 1.07998 * 125.89408 * 0.22576 * 26 25 2 50 50 H 1.07997 * 126.29290 * 180.02562 * 27 26 25 51 51 H 1.07997 * 126.29749 * 179.97438 * 28 27 26 52 52 H 1.08004 * 125.88951 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6412 0.0571 2.4767 6 8 1.0116 1.0874 2.3632 7 7 1.9852 -0.3914 3.7002 8 6 2.7483 -1.6375 3.8536 9 6 3.9928 -1.3524 4.7000 10 6 3.5692 -0.7081 6.0220 11 6 2.8619 0.6196 5.7407 12 1 3.5327 1.2798 5.1910 13 6 2.4679 1.2786 7.0640 14 7 3.6766 1.6345 7.8113 15 6 4.2681 0.6753 8.7474 16 6 4.2537 2.8637 7.6348 17 1 3.6694 3.6834 7.2434 18 6 5.5896 3.0563 7.9590 19 7 6.3602 2.0209 8.2167 20 14 6.2937 4.7851 8.0296 21 1 5.2293 5.7669 7.7006 22 1 6.8107 5.0537 9.3955 23 1 7.4013 4.9090 7.0480 24 6 1.6090 0.3596 4.9057 25 7 2.0183 -0.6906 -1.1961 26 6 1.7657 -1.9902 -1.5218 27 6 2.3879 -2.2614 -2.6871 28 6 3.0485 -1.0861 -3.0960 29 6 2.8052 -0.1415 -2.1647 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6054 -1.7197 1.2952 34 1 3.1263 -0.7994 1.2057 35 1 2.1310 -2.3851 4.3516 36 1 3.0477 -2.0057 2.8723 37 1 4.5171 -2.2865 4.9022 38 1 4.6529 -0.6738 4.1596 39 1 2.8897 -1.3767 6.5504 40 1 4.4510 -0.5265 6.6365 41 1 1.8869 2.1788 6.8629 42 1 1.8688 0.5834 7.6520 43 1 5.0611 0.1202 8.2462 44 1 4.6831 1.2100 9.6019 45 1 3.5002 -0.0180 9.0907 46 1 7.2938 2.1555 8.4429 47 1 1.1590 1.3099 4.6186 48 1 0.8970 -0.2221 5.4912 49 1 1.1704 -2.6831 -0.9458 50 1 2.3805 -3.2058 -3.2110 51 1 3.6415 -0.9642 -3.9903 52 1 3.1701 0.8748 -2.1834 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713135911.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:27:58 Heat of formation + Delta-G solvation = 34.467511 kcal Electronic energy + Delta-G solvation = -29473.776153 eV Core-core repulsion = 25667.794710 eV Total energy + Delta-G solvation = -3805.981443 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.44593 -40.21440 -37.85628 -35.60965 -35.16535 -32.94316 -31.66198 -30.61160 -29.83279 -28.88077 -28.28644 -26.36044 -25.46470 -24.99505 -22.94149 -22.38218 -21.09560 -20.61420 -19.91948 -19.51925 -18.70615 -17.92338 -16.69236 -16.53567 -16.02839 -15.73962 -14.93939 -14.81387 -14.49730 -14.28156 -14.15873 -13.83934 -13.77691 -13.52514 -13.38133 -13.04504 -12.86813 -12.78421 -12.71423 -12.41973 -12.39366 -12.21335 -11.95419 -11.64909 -11.51563 -11.37905 -11.23875 -11.00024 -10.85723 -10.73940 -10.55144 -10.40630 -10.16446 -9.96165 -9.89320 -9.76328 -9.68142 -8.75865 -8.61884 -8.47476 -8.28638 -6.75830 -5.73155 -3.17565 2.14549 2.52316 2.61274 2.94028 3.12739 3.37065 3.44790 3.46638 4.21435 4.37903 4.49901 4.51967 4.79474 4.86102 4.92119 5.07279 5.09203 5.13166 5.19901 5.21362 5.29520 5.39681 5.41758 5.45653 5.47896 5.57892 5.66694 5.68433 5.71928 5.83427 5.93135 5.97438 6.06197 6.12023 6.15724 6.18643 6.20723 6.36890 6.49560 6.65484 6.69758 6.74755 6.87160 6.94825 7.07703 7.12396 7.25451 7.37238 7.39781 7.73269 7.82043 8.09745 8.39459 9.24140 9.87314 10.35485 11.31826 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.015927 B = 0.002528 C = 0.002421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1757.629881 B =11074.889205 C =11561.075634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.148 3.852 3 H 0.107 0.893 4 C -0.150 4.150 5 C 0.519 3.481 6 O -0.543 6.543 7 N -0.603 5.603 8 C 0.107 3.893 9 C -0.134 4.134 10 C -0.111 4.111 11 C -0.120 4.120 12 H 0.074 0.926 13 C 0.159 3.841 14 N -0.600 5.600 15 C 0.165 3.835 16 C -0.249 4.249 17 H 0.068 0.932 18 C 0.000 4.000 19 N -0.909 5.909 20 Si 0.902 3.098 21 H -0.279 1.279 22 H -0.290 1.290 23 H -0.291 1.291 24 C 0.116 3.884 25 N -0.442 5.442 26 C -0.015 4.015 27 C -0.205 4.205 28 C -0.206 4.206 29 C -0.013 4.013 30 H 0.096 0.904 31 H 0.061 0.939 32 H 0.056 0.944 33 H 0.098 0.902 34 H 0.100 0.900 35 H 0.068 0.932 36 H 0.077 0.923 37 H 0.070 0.930 38 H 0.065 0.935 39 H 0.049 0.951 40 H 0.089 0.911 41 H 0.044 0.956 42 H 0.037 0.963 43 H 0.032 0.968 44 H 0.041 0.959 45 H -0.005 1.005 46 H 0.251 0.749 47 H 0.088 0.912 48 H 0.062 0.938 49 H 0.156 0.844 50 H 0.132 0.868 51 H 0.132 0.868 52 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.508 -11.521 -15.580 21.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.046 3.954 3 H 0.125 0.875 4 C -0.191 4.191 5 C 0.306 3.694 6 O -0.421 6.421 7 N -0.335 5.335 8 C -0.016 4.016 9 C -0.172 4.172 10 C -0.149 4.149 11 C -0.142 4.142 12 H 0.093 0.907 13 C 0.031 3.969 14 N -0.322 5.322 15 C 0.020 3.980 16 C -0.379 4.379 17 H 0.086 0.914 18 C -0.197 4.197 19 N -0.555 5.555 20 Si 0.733 3.267 21 H -0.204 1.204 22 H -0.217 1.217 23 H -0.218 1.218 24 C -0.006 4.006 25 N -0.117 5.117 26 C -0.145 4.145 27 C -0.229 4.229 28 C -0.230 4.230 29 C -0.143 4.143 30 H 0.114 0.886 31 H 0.080 0.920 32 H 0.075 0.925 33 H 0.116 0.884 34 H 0.119 0.881 35 H 0.087 0.913 36 H 0.096 0.904 37 H 0.088 0.912 38 H 0.084 0.916 39 H 0.068 0.932 40 H 0.107 0.893 41 H 0.063 0.937 42 H 0.056 0.944 43 H 0.050 0.950 44 H 0.060 0.940 45 H 0.014 0.986 46 H 0.061 0.939 47 H 0.107 0.893 48 H 0.080 0.920 49 H 0.173 0.827 50 H 0.150 0.850 51 H 0.150 0.850 52 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -9.803 -10.788 -15.235 21.085 hybrid contribution 0.800 0.695 -0.038 1.060 sum -9.003 -10.094 -15.273 20.401 Atomic orbital electron populations 1.22277 0.92799 1.02690 1.04476 1.21119 0.96024 0.96752 0.81529 0.87519 1.22028 1.03783 1.00698 0.92588 1.20190 0.79505 0.85449 0.84261 1.90676 1.40783 1.24521 1.86136 1.48159 1.54469 1.24725 1.06124 1.21810 0.93469 0.85611 1.00746 1.21917 0.96390 1.01257 0.97621 1.21589 1.01854 0.95519 0.95911 1.22190 0.95656 0.97528 0.98842 0.90724 1.20784 0.89749 0.96606 0.89762 1.43941 1.28491 1.14899 1.44845 1.20856 0.93467 0.90882 0.92785 1.19259 0.92405 0.86867 1.39382 0.91399 1.24985 0.95866 0.97105 1.01790 1.70064 1.05477 1.27676 1.52297 0.86207 0.78883 0.84368 0.77258 1.20367 1.21676 1.21819 1.21731 0.97814 0.96765 0.84338 1.44378 1.39164 1.10115 1.18091 1.21710 1.06833 0.86208 0.99778 1.20870 1.04763 0.99268 0.98027 1.20877 1.06938 0.93923 1.01290 1.21888 1.01071 0.99830 0.91543 0.88565 0.91992 0.92453 0.88365 0.88125 0.91340 0.90445 0.91181 0.91635 0.93189 0.89299 0.93732 0.94421 0.94982 0.94005 0.98639 0.93918 0.89320 0.91998 0.82662 0.85033 0.84977 0.82377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.58 8.98 37.16 0.33 -1.25 16 2 C 0.15 1.47 2.67 -67.94 -0.18 1.29 16 3 H 0.11 1.16 7.88 -51.93 -0.41 0.75 16 4 C -0.15 -1.44 3.50 -27.88 -0.10 -1.54 16 5 C 0.52 6.69 7.41 -10.99 -0.08 6.61 16 6 O -0.54 -8.61 13.38 5.55 0.07 -8.54 16 7 N -0.60 -7.77 2.98 -173.01 -0.52 -8.28 16 8 C 0.11 1.12 6.34 -3.71 -0.02 1.10 16 9 C -0.13 -1.73 6.08 -26.61 -0.16 -1.89 16 10 C -0.11 -1.78 4.78 -26.69 -0.13 -1.91 16 11 C -0.12 -2.09 2.53 -90.71 -0.23 -2.32 16 12 H 0.07 1.58 8.14 -51.93 -0.42 1.15 16 13 C 0.16 3.11 5.18 -4.05 -0.02 3.09 16 14 N -0.60 -14.51 2.75 -181.12 -0.50 -15.00 16 15 C 0.16 3.89 7.85 59.85 0.47 4.36 16 16 C -0.25 -6.74 9.68 -15.06 -0.15 -6.89 16 17 H 0.07 1.83 7.84 -52.49 -0.41 1.42 16 18 C 0.00 0.01 5.13 -17.43 -0.09 -0.08 16 19 N -0.91 -25.91 10.55 55.49 0.59 -25.32 16 20 Si 0.90 21.87 29.57 -169.99 -5.03 16.85 16 21 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 22 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 23 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 24 C 0.12 1.70 5.69 -3.91 -0.02 1.67 16 25 N -0.44 -4.44 2.62 -110.03 -0.29 -4.73 16 26 C -0.02 -0.15 10.45 -16.75 -0.18 -0.32 16 27 C -0.20 -2.05 10.86 -39.78 -0.43 -2.49 16 28 C -0.21 -2.12 10.86 -39.78 -0.43 -2.55 16 29 C -0.01 -0.14 11.39 -16.75 -0.19 -0.33 16 30 H 0.10 1.09 5.95 -51.93 -0.31 0.78 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.48 7.92 -51.93 -0.41 0.07 16 33 H 0.10 0.76 7.85 -51.93 -0.41 0.35 16 34 H 0.10 0.95 7.70 -51.93 -0.40 0.55 16 35 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.08 0.65 5.93 -51.93 -0.31 0.34 16 37 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.06 0.96 8.14 -51.92 -0.42 0.54 16 39 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.09 1.76 5.46 -51.93 -0.28 1.48 16 41 H 0.04 0.87 8.03 -51.93 -0.42 0.46 16 42 H 0.04 0.67 7.86 -51.93 -0.41 0.26 16 43 H 0.03 0.81 5.88 -51.93 -0.31 0.50 16 44 H 0.04 1.08 7.22 -51.93 -0.38 0.71 16 45 H 0.00 -0.10 7.83 -51.93 -0.41 -0.51 16 46 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 47 H 0.09 1.43 7.01 -51.93 -0.36 1.06 16 48 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 49 H 0.16 1.14 8.06 -52.49 -0.42 0.72 16 50 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 51 H 0.13 1.16 8.06 -52.49 -0.42 0.73 16 52 H 0.16 1.34 8.06 -52.48 -0.42 0.92 16 LS Contribution 400.46 15.07 6.03 6.03 Total: -1.00 -30.77 400.46 -10.24 -41.02 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: -9.00 Total: 1.42 kcal Atomic # 6 Polarization: -1.83 SS G_CDS: -1.61 Total: -3.44 kcal Atomic # 7 Polarization: -52.62 SS G_CDS: -0.72 Total: -53.34 kcal Atomic # 8 Polarization: -8.61 SS G_CDS: 0.07 Total: -8.54 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.03 Total: 16.85 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -30.77 -10.24 -41.02 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713135911.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.483 kcal (2) G-P(sol) polarization free energy of solvation -30.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.016 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds