Wall clock time and date at job start Tue Mar 31 2020 17:27:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.46849 * 2 1 4 4 C 1.52999 * 109.46919 * 119.99740 * 2 1 3 5 5 C 1.50702 * 109.47621 * 295.00179 * 4 2 1 6 6 O 1.21283 * 119.99394 * 359.97438 * 5 4 2 7 7 N 1.34771 * 120.00191 * 180.02562 * 5 4 2 8 8 C 1.46923 * 120.63408 * 359.97438 * 7 5 4 9 9 C 1.53187 * 108.77462 * 126.37055 * 8 7 5 10 10 C 1.53041 * 109.31438 * 54.63689 * 9 8 7 11 11 C 1.53037 * 109.53995 * 298.63509 * 10 9 8 12 12 H 1.08998 * 109.49877 * 301.37992 * 11 10 9 13 13 C 1.52993 * 109.49950 * 181.31174 * 11 10 9 14 14 N 1.46500 * 109.46885 * 65.00312 * 13 11 10 15 15 C 1.46503 * 119.99821 * 269.99875 * 14 13 11 16 16 C 1.36936 * 120.00265 * 89.99815 * 14 13 11 17 17 H 1.08002 * 119.99810 * 21.69158 * 16 14 13 18 18 C 1.38812 * 120.00117 * 201.68442 * 16 14 13 19 19 N 1.31620 * 119.99920 * 11.58231 * 18 16 14 20 20 Si 1.86802 * 119.99938 * 191.58144 * 18 16 14 21 21 H 1.48497 * 109.47074 * 359.97438 * 20 18 16 22 22 H 1.48496 * 109.47142 * 120.00560 * 20 18 16 23 23 H 1.48508 * 109.47018 * 240.00126 * 20 18 16 24 24 C 1.46931 * 120.62868 * 179.71896 * 7 5 4 25 25 N 1.46494 * 109.47271 * 239.99961 * 2 1 3 26 26 C 1.36342 * 125.63601 * 299.69223 * 25 2 1 27 27 C 1.34852 * 108.21953 * 180.26488 * 26 25 2 28 28 C 1.40885 * 107.41811 * 359.97438 * 27 26 25 29 29 C 1.34856 * 107.41623 * 0.02562 * 28 27 26 30 30 H 1.09004 * 109.47562 * 299.99879 * 1 2 3 31 31 H 1.09003 * 109.47228 * 60.00286 * 1 2 3 32 32 H 1.09001 * 109.46849 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47376 * 55.00224 * 4 2 1 34 34 H 1.09006 * 109.46978 * 175.00238 * 4 2 1 35 35 H 1.08994 * 109.59120 * 246.16392 * 8 7 5 36 36 H 1.09001 * 109.58509 * 6.44374 * 8 7 5 37 37 H 1.09000 * 109.49913 * 174.58832 * 9 8 7 38 38 H 1.09010 * 109.50045 * 294.68816 * 9 8 7 39 39 H 1.08999 * 109.45525 * 58.65689 * 10 9 8 40 40 H 1.09003 * 109.46189 * 178.62810 * 10 9 8 41 41 H 1.09007 * 109.47277 * 184.99918 * 13 11 10 42 42 H 1.08995 * 109.47649 * 305.00397 * 13 11 10 43 43 H 1.09002 * 109.46921 * 95.29513 * 15 14 13 44 44 H 1.09004 * 109.47324 * 215.29308 * 15 14 13 45 45 H 1.09000 * 109.46981 * 335.29127 * 15 14 13 46 46 H 0.97004 * 119.99728 * 179.97438 * 19 18 16 47 47 H 1.08996 * 109.58482 * 353.42186 * 24 7 5 48 48 H 1.09005 * 109.58439 * 113.84230 * 24 7 5 49 49 H 1.07998 * 125.89408 * 0.22576 * 26 25 2 50 50 H 1.07997 * 126.29290 * 180.02562 * 27 26 25 51 51 H 1.07997 * 126.29749 * 179.97438 * 28 27 26 52 52 H 1.08004 * 125.88951 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6412 0.0571 2.4767 6 8 1.0116 1.0874 2.3632 7 7 1.9852 -0.3914 3.7002 8 6 2.7483 -1.6375 3.8536 9 6 3.9928 -1.3524 4.7000 10 6 3.5692 -0.7081 6.0220 11 6 2.8619 0.6196 5.7407 12 1 3.5327 1.2798 5.1910 13 6 2.4679 1.2786 7.0640 14 7 3.6766 1.6345 7.8113 15 6 4.2681 0.6753 8.7474 16 6 4.2537 2.8637 7.6348 17 1 3.6694 3.6834 7.2434 18 6 5.5896 3.0563 7.9590 19 7 6.3602 2.0209 8.2167 20 14 6.2937 4.7851 8.0296 21 1 5.2293 5.7669 7.7006 22 1 6.8107 5.0537 9.3955 23 1 7.4013 4.9090 7.0480 24 6 1.6090 0.3596 4.9057 25 7 2.0183 -0.6906 -1.1961 26 6 1.7657 -1.9902 -1.5218 27 6 2.3879 -2.2614 -2.6871 28 6 3.0485 -1.0861 -3.0960 29 6 2.8052 -0.1415 -2.1647 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6054 -1.7197 1.2952 34 1 3.1263 -0.7994 1.2057 35 1 2.1310 -2.3851 4.3516 36 1 3.0477 -2.0057 2.8723 37 1 4.5171 -2.2865 4.9022 38 1 4.6529 -0.6738 4.1596 39 1 2.8897 -1.3767 6.5504 40 1 4.4510 -0.5265 6.6365 41 1 1.8869 2.1788 6.8629 42 1 1.8688 0.5834 7.6520 43 1 5.0611 0.1202 8.2462 44 1 4.6831 1.2100 9.6019 45 1 3.5002 -0.0180 9.0907 46 1 7.2938 2.1555 8.4429 47 1 1.1590 1.3099 4.6186 48 1 0.8970 -0.2221 5.4912 49 1 1.1704 -2.6831 -0.9458 50 1 2.3805 -3.2058 -3.2110 51 1 3.6415 -0.9642 -3.9903 52 1 3.1701 0.8748 -2.1834 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713135911.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:27:57 Heat of formation + Delta-G solvation = 19.400179 kcal Electronic energy + Delta-G solvation = -29474.429522 eV Core-core repulsion = 25667.794710 eV Total energy + Delta-G solvation = -3806.634812 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.20526 -41.23580 -39.11369 -37.23676 -36.00055 -34.45609 -32.98086 -32.18176 -30.72714 -29.60945 -29.16247 -28.14000 -27.18092 -26.08879 -24.04135 -23.52150 -22.57227 -21.43298 -21.15159 -20.44054 -19.68274 -18.79327 -18.66297 -17.46362 -17.10924 -16.81345 -16.61431 -15.95648 -15.62064 -15.60690 -15.28505 -15.09803 -14.92382 -14.58769 -14.50655 -14.42630 -13.95815 -13.90961 -13.72228 -13.57223 -13.21250 -13.11586 -12.96403 -12.92405 -12.79975 -12.74296 -12.64311 -12.36449 -12.24787 -12.13603 -12.07901 -12.00647 -11.89359 -11.59438 -11.50758 -11.16748 -10.85575 -10.61642 -9.63790 -9.50410 -9.01785 -8.74485 -7.83011 -5.28508 1.40119 1.41743 1.43761 1.53033 1.53944 1.76895 2.20081 2.24209 2.49349 3.30329 3.43014 3.50501 3.69531 3.76185 3.87366 4.01083 4.08143 4.09926 4.19594 4.30755 4.41814 4.43104 4.43407 4.46353 4.53529 4.58877 4.68057 4.68727 4.76516 4.82682 4.85093 4.87423 4.88211 4.93596 4.94301 4.99035 5.19905 5.22754 5.27662 5.37433 5.44754 5.48069 5.48726 5.56816 5.59836 5.65842 5.84627 6.14649 6.33574 6.38067 6.41329 6.53627 7.10151 7.17034 7.90325 8.31430 9.19642 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.015927 B = 0.002528 C = 0.002421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1757.629881 B =11074.889205 C =11561.075634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.151 3.849 3 H 0.090 0.910 4 C -0.138 4.138 5 C 0.515 3.485 6 O -0.578 6.578 7 N -0.606 5.606 8 C 0.110 3.890 9 C -0.129 4.129 10 C -0.106 4.106 11 C -0.106 4.106 12 H 0.026 0.974 13 C 0.155 3.845 14 N -0.614 5.614 15 C 0.181 3.819 16 C -0.256 4.256 17 H 0.063 0.937 18 C -0.052 4.052 19 N -0.934 5.934 20 Si 0.960 3.040 21 H -0.271 1.271 22 H -0.289 1.289 23 H -0.294 1.294 24 C 0.126 3.874 25 N -0.443 5.443 26 C -0.016 4.016 27 C -0.222 4.222 28 C -0.219 4.219 29 C -0.033 4.033 30 H 0.078 0.922 31 H 0.058 0.942 32 H 0.074 0.926 33 H 0.129 0.871 34 H 0.106 0.894 35 H 0.096 0.904 36 H 0.107 0.893 37 H 0.093 0.907 38 H 0.039 0.961 39 H 0.073 0.927 40 H 0.046 0.954 41 H 0.038 0.962 42 H 0.065 0.935 43 H 0.013 0.987 44 H 0.009 0.991 45 H 0.029 0.971 46 H 0.246 0.754 47 H 0.068 0.932 48 H 0.088 0.912 49 H 0.182 0.818 50 H 0.145 0.855 51 H 0.141 0.859 52 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.910 -13.835 -16.527 24.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.049 3.951 3 H 0.108 0.892 4 C -0.178 4.178 5 C 0.304 3.696 6 O -0.459 6.459 7 N -0.338 5.338 8 C -0.012 4.012 9 C -0.168 4.168 10 C -0.144 4.144 11 C -0.128 4.128 12 H 0.045 0.955 13 C 0.028 3.972 14 N -0.337 5.337 15 C 0.036 3.964 16 C -0.387 4.387 17 H 0.080 0.920 18 C -0.247 4.247 19 N -0.581 5.581 20 Si 0.790 3.210 21 H -0.196 1.196 22 H -0.216 1.216 23 H -0.221 1.221 24 C 0.003 3.997 25 N -0.119 5.119 26 C -0.145 4.145 27 C -0.246 4.246 28 C -0.244 4.244 29 C -0.163 4.163 30 H 0.097 0.903 31 H 0.077 0.923 32 H 0.093 0.907 33 H 0.147 0.853 34 H 0.124 0.876 35 H 0.114 0.886 36 H 0.125 0.875 37 H 0.111 0.889 38 H 0.058 0.942 39 H 0.092 0.908 40 H 0.064 0.936 41 H 0.056 0.944 42 H 0.083 0.917 43 H 0.031 0.969 44 H 0.028 0.972 45 H 0.048 0.952 46 H 0.055 0.945 47 H 0.087 0.913 48 H 0.106 0.894 49 H 0.199 0.801 50 H 0.163 0.837 51 H 0.158 0.842 52 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -11.225 -13.122 -16.201 23.678 hybrid contribution 1.188 1.415 0.234 1.863 sum -10.037 -11.706 -15.966 22.197 Atomic orbital electron populations 1.22179 0.92476 1.03452 1.03399 1.21008 0.96179 0.96091 0.81841 0.89226 1.21976 1.04155 1.01368 0.90347 1.20759 0.78735 0.85118 0.85013 1.90671 1.42389 1.26178 1.86642 1.48237 1.54655 1.25333 1.05540 1.22001 0.92181 0.84833 1.02191 1.21870 0.97574 1.01334 0.95987 1.21483 1.00306 0.95244 0.97365 1.21877 0.96223 0.97285 0.97408 0.95529 1.20953 0.88125 0.97267 0.90833 1.44128 1.29364 1.14355 1.45891 1.20596 0.93887 0.90568 0.91311 1.19484 0.92598 0.88118 1.38471 0.91962 1.25656 0.96341 1.00270 1.02401 1.70212 1.05311 1.29111 1.53495 0.85296 0.78033 0.80835 0.76874 1.19594 1.21601 1.22136 1.21445 0.96270 0.96910 0.85064 1.44392 1.39186 1.10423 1.17928 1.22153 1.06473 0.86093 0.99801 1.21170 1.05044 0.99768 0.98612 1.21154 1.07196 0.94311 1.01708 1.22167 1.01637 1.00509 0.91945 0.90335 0.92320 0.90713 0.85307 0.87569 0.88564 0.87479 0.88885 0.94223 0.90841 0.93557 0.94364 0.91682 0.96887 0.97191 0.95214 0.94453 0.91313 0.89419 0.80123 0.83708 0.84153 0.81605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.75 8.98 71.98 0.65 -2.11 16 2 C 0.15 2.75 2.67 44.99 0.12 2.87 16 3 H 0.09 1.93 7.88 -2.39 -0.02 1.92 16 4 C -0.14 -2.25 3.50 29.85 0.10 -2.14 16 5 C 0.51 12.40 7.41 87.66 0.65 13.05 16 6 O -0.58 -18.20 13.38 -3.04 -0.04 -18.24 16 7 N -0.61 -14.22 2.98 -819.68 -2.44 -16.66 16 8 C 0.11 1.87 6.34 86.36 0.55 2.42 16 9 C -0.13 -3.09 6.08 30.67 0.19 -2.90 16 10 C -0.11 -3.29 4.78 30.62 0.15 -3.15 16 11 C -0.11 -3.69 2.53 -10.85 -0.03 -3.71 16 12 H 0.03 1.16 8.14 -2.39 -0.02 1.15 16 13 C 0.15 6.02 5.18 86.38 0.45 6.46 16 14 N -0.61 -30.23 2.75 -726.93 -2.00 -32.23 16 15 C 0.18 8.68 7.85 127.77 1.00 9.68 16 16 C -0.26 -14.21 9.68 84.03 0.81 -13.39 16 17 H 0.06 3.45 7.84 -2.91 -0.02 3.42 16 18 C -0.05 -2.92 5.13 84.86 0.44 -2.49 16 19 N -0.93 -54.87 10.55 21.65 0.23 -54.65 16 20 Si 0.96 45.99 29.57 68.60 2.03 48.02 16 21 H -0.27 -12.51 7.11 99.48 0.71 -11.81 16 22 H -0.29 -13.72 7.11 99.48 0.71 -13.02 16 23 H -0.29 -14.13 7.11 99.48 0.71 -13.42 16 24 C 0.13 3.52 5.69 86.23 0.49 4.01 16 25 N -0.44 -8.04 2.62 -502.01 -1.31 -9.35 16 26 C -0.02 -0.25 10.45 83.21 0.87 0.62 16 27 C -0.22 -3.97 10.86 22.14 0.24 -3.73 16 28 C -0.22 -4.25 10.86 22.14 0.24 -4.01 16 29 C -0.03 -0.64 11.39 83.22 0.95 0.30 16 30 H 0.08 1.70 5.95 -2.38 -0.01 1.69 16 31 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.07 1.03 7.92 -2.39 -0.02 1.01 16 33 H 0.13 1.34 7.85 -2.39 -0.02 1.33 16 34 H 0.11 1.68 7.70 -2.38 -0.02 1.66 16 35 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.11 1.25 5.93 -2.39 -0.01 1.24 16 37 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 38 H 0.04 1.14 8.14 -2.38 -0.02 1.12 16 39 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 40 H 0.05 1.85 5.46 -2.39 -0.01 1.84 16 41 H 0.04 1.51 8.03 -2.38 -0.02 1.49 16 42 H 0.06 2.17 7.86 -2.39 -0.02 2.15 16 43 H 0.01 0.67 5.88 -2.39 -0.01 0.66 16 44 H 0.01 0.50 7.22 -2.39 -0.02 0.49 16 45 H 0.03 1.19 7.83 -2.39 -0.02 1.17 16 46 H 0.25 14.10 8.31 -92.71 -0.77 13.33 16 47 H 0.07 2.21 7.01 -2.39 -0.02 2.20 16 48 H 0.09 2.03 8.14 -2.38 -0.02 2.01 16 49 H 0.18 1.87 8.06 -2.91 -0.02 1.84 16 50 H 0.15 2.09 8.06 -2.91 -0.02 2.07 16 51 H 0.14 2.33 8.06 -2.91 -0.02 2.31 16 52 H 0.17 2.77 8.06 -2.91 -0.02 2.75 16 Total: -1.00 -70.00 400.46 5.20 -64.80 By element: Atomic # 1 Polarization: 15.65 SS G_CDS: 0.88 Total: 16.53 kcal Atomic # 6 Polarization: -6.08 SS G_CDS: 7.86 Total: 1.78 kcal Atomic # 7 Polarization: -107.37 SS G_CDS: -5.52 Total: -112.89 kcal Atomic # 8 Polarization: -18.20 SS G_CDS: -0.04 Total: -18.24 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 2.03 Total: 48.02 kcal Total: -70.00 5.20 -64.80 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713135911.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.201 kcal (2) G-P(sol) polarization free energy of solvation -70.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.801 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds