Wall clock time and date at job start Tue Mar 31 2020 17:29:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.46767 * 2 1 4 4 C 1.52997 * 109.46767 * 119.99728 * 2 1 3 5 5 C 1.50702 * 109.47245 * 295.00055 * 4 2 1 6 6 O 1.21280 * 120.00000 * 359.72453 * 5 4 2 7 7 N 1.34781 * 119.99984 * 180.02562 * 5 4 2 8 8 C 1.46496 * 120.00099 * 180.02562 * 7 5 4 9 9 C 1.52996 * 109.47311 * 180.02562 * 8 7 5 10 10 C 1.53000 * 109.47206 * 180.02562 * 9 8 7 11 11 C 1.53004 * 109.46972 * 174.92378 * 10 9 8 12 12 H 1.08997 * 109.87220 * 304.34246 * 11 10 9 13 13 C 1.54328 * 109.88314 * 65.36346 * 11 10 9 14 14 C 1.55150 * 102.94172 * 141.61014 * 13 11 10 15 15 C 1.54913 * 101.58491 * 324.49689 * 14 13 11 16 16 N 1.47019 * 109.88031 * 183.32815 * 11 10 9 17 17 C 1.36944 * 125.64722 * 61.60883 * 16 11 10 18 18 H 1.07994 * 120.00331 * 14.15979 * 17 16 11 19 19 C 1.38819 * 119.99660 * 194.15726 * 17 16 11 20 20 N 1.31615 * 119.99985 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 119.99464 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.47182 * 90.00452 * 21 19 17 23 23 H 1.48500 * 109.46803 * 209.99834 * 21 19 17 24 24 H 1.48493 * 109.47497 * 330.00045 * 21 19 17 25 25 N 1.46497 * 109.47048 * 239.99928 * 2 1 3 26 26 C 1.36339 * 125.63746 * 299.68920 * 25 2 1 27 27 C 1.34845 * 108.22148 * 179.83423 * 26 25 2 28 28 C 1.40889 * 107.41356 * 0.42881 * 27 26 25 29 29 C 1.34853 * 107.42020 * 359.73514 * 28 27 26 30 30 H 1.08997 * 109.47459 * 300.00560 * 1 2 3 31 31 H 1.08998 * 109.47132 * 59.99898 * 1 2 3 32 32 H 1.08999 * 109.47656 * 180.02562 * 1 2 3 33 33 H 1.09007 * 109.47133 * 175.00304 * 4 2 1 34 34 H 1.08995 * 109.47393 * 55.00078 * 4 2 1 35 35 H 0.97003 * 120.00124 * 0.02562 * 7 5 4 36 36 H 1.09007 * 109.47042 * 299.99825 * 8 7 5 37 37 H 1.08994 * 109.47082 * 59.99956 * 8 7 5 38 38 H 1.09000 * 109.46876 * 300.00145 * 9 8 7 39 39 H 1.08998 * 109.47681 * 59.99765 * 9 8 7 40 40 H 1.08999 * 109.46824 * 294.92190 * 10 9 8 41 41 H 1.08996 * 109.47240 * 54.92158 * 10 9 8 42 42 H 1.09001 * 110.71802 * 259.97303 * 13 11 10 43 43 H 1.08993 * 110.72175 * 23.24496 * 13 11 10 44 44 H 1.09004 * 111.00618 * 82.57033 * 14 13 11 45 45 H 1.09000 * 111.00868 * 206.38317 * 14 13 11 46 46 H 1.08996 * 110.36798 * 155.85380 * 15 14 13 47 47 H 1.09000 * 110.36187 * 278.17452 * 15 14 13 48 48 H 0.97005 * 119.99663 * 179.97438 * 20 19 17 49 49 H 1.08003 * 125.89023 * 359.96481 * 26 25 2 50 50 H 1.08002 * 126.29728 * 180.16026 * 27 26 25 51 51 H 1.08005 * 126.29114 * 179.73632 * 28 27 26 52 52 H 1.07996 * 125.89030 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6412 0.0572 2.4766 6 8 1.0155 1.0899 2.3630 7 7 1.9851 -0.3913 3.7002 8 6 1.5970 0.3650 4.8933 9 6 2.1082 -0.3554 6.1425 10 6 1.7023 0.4342 7.3886 11 6 2.1020 -0.3487 8.6410 12 1 1.6616 -1.3453 8.6112 13 6 3.6392 -0.4563 8.7243 14 6 3.9170 -0.2955 10.2423 15 6 2.8276 0.7272 10.6512 16 7 1.6453 0.3641 9.8430 17 6 0.3424 0.6447 10.1578 18 1 -0.4593 0.1487 9.6310 19 6 0.0523 1.5667 11.1542 20 7 1.0293 2.1707 11.7966 21 14 -1.7250 1.9499 11.5831 22 1 -2.1874 1.0251 12.6491 23 1 -1.8268 3.3509 12.0648 24 1 -2.5734 1.7784 10.3766 25 7 2.0183 -0.6906 -1.1961 26 6 1.7656 -1.9902 -1.5219 27 6 2.3799 -2.2587 -2.6919 28 6 3.0441 -1.0847 -3.0985 29 6 2.8055 -0.1417 -2.1645 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 3.1263 -0.7994 1.2057 34 1 1.6053 -1.7197 1.2952 35 1 2.4896 -1.2148 3.7909 36 1 2.0310 1.3640 4.8474 37 1 0.5107 0.4425 4.9370 38 1 1.6747 -1.3544 6.1886 39 1 3.1945 -0.4325 6.0987 40 1 2.2075 1.4000 7.3872 41 1 0.6233 0.5885 7.3855 42 1 3.9772 -1.4307 8.3716 43 1 4.1132 0.3455 8.1584 44 1 3.7814 -1.2414 10.7667 45 1 4.9154 0.1057 10.4165 46 1 2.6018 0.6364 11.7136 47 1 3.1520 1.7410 10.4167 48 1 0.8265 2.8153 12.4926 49 1 1.1737 -2.6843 -0.9437 50 1 2.3688 -3.2018 -3.2181 51 1 3.6357 -0.9623 -3.9939 52 1 3.1740 0.8733 -2.1810 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713441760.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:29:23 Heat of formation + Delta-G solvation = 2.824917 kcal Electronic energy + Delta-G solvation = -27897.916425 eV Core-core repulsion = 24090.562856 eV Total energy + Delta-G solvation = -3807.353569 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.16601 -40.80361 -39.46032 -36.91834 -35.85671 -34.69437 -33.68686 -31.29667 -30.91161 -29.85799 -29.55388 -28.54222 -26.61462 -25.54230 -23.72786 -22.69654 -21.85923 -21.66571 -21.26200 -20.69615 -20.25643 -18.71369 -18.59513 -17.50479 -17.04931 -17.01417 -16.83425 -16.09788 -15.96723 -15.69119 -15.46750 -15.29463 -14.77817 -14.48125 -14.30095 -13.99090 -13.91187 -13.69754 -13.60935 -13.56299 -13.16436 -13.09875 -13.00625 -12.92256 -12.80939 -12.73967 -12.63502 -12.37955 -12.23452 -12.11478 -12.01345 -11.82144 -11.66691 -11.53922 -11.30955 -11.16165 -10.92485 -10.65437 -10.11023 -9.50106 -9.01549 -8.77760 -7.85486 -5.20739 1.41057 1.43736 1.44968 1.53430 1.56667 1.81331 2.20124 2.38433 2.49713 3.33163 3.45761 3.67769 3.72251 3.84500 3.96986 4.01560 4.13108 4.17516 4.21854 4.26961 4.35898 4.43498 4.44155 4.46176 4.50576 4.63278 4.69140 4.74592 4.80144 4.82831 4.85196 4.88266 4.94579 4.99918 5.04743 5.13939 5.17798 5.24440 5.34914 5.43277 5.45372 5.49202 5.50957 5.53242 5.68105 5.71423 5.79880 6.14587 6.27623 6.39029 6.52010 6.54575 7.12479 7.21849 7.82477 8.50160 9.26131 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.020139 B = 0.001789 C = 0.001686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.970528 B =15644.044115 C =16604.580102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.151 3.849 3 H 0.096 0.904 4 C -0.139 4.139 5 C 0.514 3.486 6 O -0.580 6.580 7 N -0.713 5.713 8 C 0.125 3.875 9 C -0.108 4.108 10 C -0.112 4.112 11 C 0.151 3.849 12 H 0.035 0.965 13 C -0.111 4.111 14 C -0.138 4.138 15 C 0.173 3.827 16 N -0.620 5.620 17 C -0.229 4.229 18 H 0.076 0.924 19 C -0.067 4.067 20 N -0.950 5.950 21 Si 0.970 3.030 22 H -0.286 1.286 23 H -0.297 1.297 24 H -0.270 1.270 25 N -0.443 5.443 26 C -0.018 4.018 27 C -0.223 4.223 28 C -0.221 4.221 29 C -0.029 4.029 30 H 0.076 0.924 31 H 0.057 0.943 32 H 0.070 0.930 33 H 0.118 0.882 34 H 0.125 0.875 35 H 0.419 0.581 36 H 0.052 0.948 37 H 0.049 0.951 38 H 0.082 0.918 39 H 0.089 0.911 40 H 0.039 0.961 41 H 0.036 0.964 42 H 0.097 0.903 43 H 0.071 0.929 44 H 0.063 0.937 45 H 0.080 0.920 46 H 0.030 0.970 47 H -0.009 1.009 48 H 0.245 0.755 49 H 0.178 0.822 50 H 0.142 0.858 51 H 0.141 0.859 52 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.892 -11.338 -25.773 28.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.049 3.951 3 H 0.115 0.885 4 C -0.179 4.179 5 C 0.301 3.699 6 O -0.460 6.460 7 N -0.366 5.366 8 C 0.001 3.999 9 C -0.146 4.146 10 C -0.153 4.153 11 C 0.045 3.955 12 H 0.053 0.947 13 C -0.148 4.148 14 C -0.176 4.176 15 C 0.048 3.952 16 N -0.344 5.344 17 C -0.358 4.358 18 H 0.094 0.906 19 C -0.260 4.260 20 N -0.599 5.599 21 Si 0.799 3.201 22 H -0.213 1.213 23 H -0.224 1.224 24 H -0.195 1.195 25 N -0.119 5.119 26 C -0.148 4.148 27 C -0.247 4.247 28 C -0.245 4.245 29 C -0.159 4.159 30 H 0.095 0.905 31 H 0.076 0.924 32 H 0.089 0.911 33 H 0.136 0.864 34 H 0.143 0.857 35 H 0.256 0.744 36 H 0.070 0.930 37 H 0.068 0.932 38 H 0.100 0.900 39 H 0.108 0.892 40 H 0.058 0.942 41 H 0.055 0.945 42 H 0.116 0.884 43 H 0.089 0.911 44 H 0.082 0.918 45 H 0.099 0.901 46 H 0.048 0.952 47 H 0.009 0.991 48 H 0.054 0.946 49 H 0.196 0.804 50 H 0.160 0.840 51 H 0.159 0.841 52 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 6.202 -10.309 -25.387 28.094 hybrid contribution -0.948 0.624 0.787 1.381 sum 5.254 -9.685 -24.600 26.955 Atomic orbital electron populations 1.22203 0.93166 1.03244 1.03295 1.21019 0.95695 0.96443 0.81989 0.88538 1.21948 1.04899 1.01070 0.90026 1.20789 0.78511 0.85255 0.85365 1.90714 1.41845 1.26269 1.87163 1.45906 1.57306 1.28296 1.05043 1.21236 0.99299 0.95247 0.84133 1.21630 1.02494 0.99406 0.91102 1.21820 0.99953 0.98703 0.94801 1.21227 0.94395 0.93884 0.85986 0.94673 1.22583 0.93845 1.02715 0.95678 1.22881 0.98502 0.99203 0.97036 1.21270 0.85670 0.93401 0.94836 1.44932 1.02035 1.66510 1.20940 1.19291 0.83501 1.16998 1.16054 0.90580 1.25669 1.01093 0.98725 1.00546 1.70148 1.31133 1.31384 1.27211 0.85195 0.80204 0.76605 0.78088 1.21267 1.22357 1.19526 1.44389 1.39188 1.10247 1.18085 1.22119 1.06612 0.86284 0.99754 1.21172 1.05189 0.99880 0.98467 1.21161 1.07250 0.94361 1.01742 1.22195 1.01356 1.00552 0.91748 0.90521 0.92435 0.91078 0.86403 0.85732 0.74415 0.92990 0.93210 0.89983 0.89217 0.94166 0.94528 0.88430 0.91057 0.91803 0.90127 0.95199 0.99111 0.94560 0.80445 0.83973 0.84143 0.81122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.52 8.98 71.98 0.65 -1.87 16 2 C 0.15 2.15 2.67 44.99 0.12 2.27 16 3 H 0.10 1.58 7.87 -2.39 -0.02 1.56 16 4 C -0.14 -1.50 5.16 29.85 0.15 -1.35 16 5 C 0.51 9.28 7.54 87.66 0.66 9.94 16 6 O -0.58 -15.70 13.98 -3.03 -0.04 -15.74 16 7 N -0.71 -11.16 5.56 -463.07 -2.57 -13.73 16 8 C 0.13 2.78 5.67 86.38 0.49 3.27 16 9 C -0.11 -2.30 5.07 30.59 0.16 -2.14 16 10 C -0.11 -3.75 4.69 30.60 0.14 -3.61 16 11 C 0.15 5.62 3.18 45.34 0.14 5.76 16 12 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 13 C -0.11 -3.25 5.61 31.78 0.18 -3.07 16 14 C -0.14 -4.81 7.08 31.99 0.23 -4.58 16 15 C 0.17 8.50 5.44 86.79 0.47 8.97 16 16 N -0.62 -31.04 3.14 -667.43 -2.09 -33.13 16 17 C -0.23 -12.73 9.75 84.03 0.82 -11.91 16 18 H 0.08 4.08 7.83 -2.91 -0.02 4.06 16 19 C -0.07 -3.87 5.47 84.86 0.46 -3.40 16 20 N -0.95 -57.82 10.58 21.65 0.23 -57.59 16 21 Si 0.97 46.37 29.55 68.60 2.03 48.40 16 22 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 23 H -0.30 -14.37 7.11 99.48 0.71 -13.66 16 24 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 25 N -0.44 -6.55 2.62 -502.02 -1.31 -7.86 16 26 C -0.02 -0.25 10.45 83.21 0.87 0.62 16 27 C -0.22 -3.52 10.86 22.14 0.24 -3.28 16 28 C -0.22 -3.63 10.86 22.14 0.24 -3.39 16 29 C -0.03 -0.46 11.39 83.21 0.95 0.49 16 30 H 0.08 1.54 5.96 -2.39 -0.01 1.53 16 31 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.07 0.91 7.92 -2.39 -0.02 0.89 16 33 H 0.12 0.96 8.14 -2.38 -0.02 0.94 16 34 H 0.12 0.81 8.05 -2.39 -0.02 0.79 16 35 H 0.42 3.59 8.47 -92.71 -0.79 2.80 16 36 H 0.05 1.34 8.14 -2.38 -0.02 1.32 16 37 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 39 H 0.09 1.54 7.57 -2.39 -0.02 1.52 16 40 H 0.04 1.48 8.07 -2.39 -0.02 1.46 16 41 H 0.04 1.40 7.89 -2.39 -0.02 1.38 16 42 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 43 H 0.07 1.98 7.79 -2.39 -0.02 1.96 16 44 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 45 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 46 H 0.03 1.67 6.90 -2.39 -0.02 1.65 16 47 H -0.01 -0.50 8.08 -2.39 -0.02 -0.52 16 48 H 0.25 14.58 8.31 -92.70 -0.77 13.81 16 49 H 0.18 1.57 8.06 -2.91 -0.02 1.55 16 50 H 0.14 1.83 8.06 -2.91 -0.02 1.80 16 51 H 0.14 1.93 8.06 -2.91 -0.02 1.91 16 52 H 0.17 2.06 8.06 -2.91 -0.02 2.04 16 Total: -1.00 -74.05 412.85 3.30 -70.75 By element: Atomic # 1 Polarization: 16.09 SS G_CDS: 0.09 Total: 16.18 kcal Atomic # 6 Polarization: -14.24 SS G_CDS: 6.97 Total: -7.27 kcal Atomic # 7 Polarization: -106.56 SS G_CDS: -5.75 Total: -112.31 kcal Atomic # 8 Polarization: -15.70 SS G_CDS: -0.04 Total: -15.74 kcal Atomic # 14 Polarization: 46.37 SS G_CDS: 2.03 Total: 48.40 kcal Total: -74.05 3.30 -70.75 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713441760.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.576 kcal (2) G-P(sol) polarization free energy of solvation -74.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.751 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds