Wall clock time and date at job start Tue Mar 31 2020 17:33:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08993 * 109.47324 * 2 1 4 4 N 1.46500 * 109.47208 * 120.00265 * 2 1 3 5 5 C 1.34772 * 119.99756 * 275.27402 * 4 2 1 6 6 O 1.21282 * 120.00482 * 359.72327 * 5 4 2 7 7 C 1.50707 * 119.99656 * 179.72626 * 5 4 2 8 8 C 1.53004 * 109.46727 * 180.02562 * 7 5 4 9 9 C 1.52998 * 109.46731 * 180.02562 * 8 7 5 10 10 N 1.46501 * 109.47129 * 179.97438 * 9 8 7 11 11 C 1.36344 * 125.63322 * 269.69489 * 10 9 8 12 12 C 1.34858 * 108.21752 * 179.82898 * 11 10 9 13 13 C 1.40892 * 107.41616 * 0.42212 * 12 11 10 14 14 C 1.34858 * 107.41504 * 359.73839 * 13 12 11 15 15 C 1.52999 * 109.46686 * 240.00172 * 2 1 3 16 16 H 1.09003 * 109.50022 * 299.99421 * 15 2 1 17 17 C 1.53035 * 109.50036 * 60.06827 * 15 2 1 18 18 C 1.53041 * 109.53879 * 181.31827 * 17 15 2 19 19 C 1.53191 * 109.30870 * 298.62759 * 18 17 15 20 20 N 1.46924 * 108.77690 * 54.64090 * 19 18 17 21 21 C 1.36934 * 120.63340 * 126.38679 * 20 19 18 22 22 H 1.07996 * 120.00081 * 332.56847 * 21 20 19 23 23 C 1.38809 * 120.00091 * 152.57568 * 21 20 19 24 24 N 1.31618 * 120.00547 * 159.36135 * 23 21 20 25 25 Si 1.86807 * 119.99797 * 339.35758 * 23 21 20 26 26 H 1.48497 * 109.46854 * 92.94920 * 25 23 21 27 27 H 1.48503 * 109.46725 * 212.94623 * 25 23 21 28 28 H 1.48490 * 109.47177 * 332.94615 * 25 23 21 29 29 C 1.46938 * 118.76103 * 306.40903 * 20 19 18 30 30 H 1.09001 * 109.46865 * 299.99638 * 1 2 3 31 31 H 1.08996 * 109.47530 * 59.99659 * 1 2 3 32 32 H 1.09002 * 109.47207 * 180.02562 * 1 2 3 33 33 H 0.97001 * 119.99703 * 94.99672 * 4 2 1 34 34 H 1.08999 * 109.47204 * 299.99525 * 7 5 4 35 35 H 1.08996 * 109.47418 * 59.99736 * 7 5 4 36 36 H 1.08999 * 109.46846 * 299.99690 * 8 7 5 37 37 H 1.08994 * 109.47203 * 60.00176 * 8 7 5 38 38 H 1.09008 * 109.47273 * 299.99653 * 9 8 7 39 39 H 1.08996 * 109.47512 * 59.99621 * 9 8 7 40 40 H 1.08001 * 125.89099 * 359.94938 * 11 10 9 41 41 H 1.08000 * 126.29070 * 180.15408 * 12 11 10 42 42 H 1.07997 * 126.29420 * 179.73403 * 13 12 11 43 43 H 1.07998 * 125.88775 * 180.02562 * 14 13 12 44 44 H 1.09009 * 109.45776 * 301.32962 * 17 15 2 45 45 H 1.08998 * 109.46385 * 61.30103 * 17 15 2 46 46 H 1.09000 * 109.50281 * 58.58150 * 18 17 15 47 47 H 1.09002 * 109.49324 * 178.64850 * 18 17 15 48 48 H 1.09004 * 109.58255 * 174.42547 * 19 18 17 49 49 H 1.08999 * 109.58982 * 294.70776 * 19 18 17 50 50 H 0.96992 * 120.00466 * 180.02562 * 24 23 21 51 51 H 1.08993 * 109.55995 * 293.78417 * 29 20 19 52 52 H 1.09004 * 109.61433 * 173.35561 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.1418 -0.0197 2.3584 6 8 1.8534 1.1571 2.4130 7 6 2.6384 -0.7317 3.5904 8 6 2.6840 0.2499 4.7631 9 6 3.1887 -0.4728 6.0137 10 7 3.2330 0.4672 7.1365 11 6 4.3009 1.2407 7.4832 12 6 3.9583 1.9730 8.5626 13 6 2.6335 1.6322 8.9002 14 6 2.2151 0.7089 8.0108 15 6 2.0399 -0.7212 -1.2493 16 1 1.6769 -1.7490 -1.2497 17 6 1.5315 0.0007 -2.4992 18 6 2.0138 -0.7389 -3.7492 19 6 3.5454 -0.7373 -3.7795 20 7 4.0439 -1.2985 -2.5164 21 6 4.9315 -2.3412 -2.5184 22 1 4.9447 -3.0375 -3.3438 23 6 5.8141 -2.5033 -1.4594 24 7 6.3698 -3.6760 -1.2394 25 14 6.2134 -1.0570 -0.3465 26 1 5.2972 -1.0641 0.8221 27 1 7.6174 -1.1678 0.1245 28 1 6.0430 0.2102 -1.1015 29 6 3.5719 -0.7202 -1.2508 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 2.2490 -1.6318 1.1525 34 1 1.9645 -1.5539 3.8313 35 1 3.6383 -1.1239 3.4052 36 1 3.3576 1.0723 4.5225 37 1 1.6838 0.6416 4.9482 38 1 2.5153 -1.2955 6.2545 39 1 4.1889 -0.8643 5.8284 40 1 5.2557 1.2643 6.9792 41 1 4.5857 2.6861 9.0766 42 1 2.0588 2.0360 9.7205 43 1 1.2415 0.2418 7.9938 44 1 0.4417 0.0224 -2.4880 45 1 1.9149 1.0210 -2.5105 46 1 1.6514 -1.7666 -3.7265 47 1 1.6313 -0.2379 -4.6385 48 1 3.8950 -1.3464 -4.6131 49 1 3.9075 0.2841 -3.8961 50 1 6.9863 -3.7893 -0.4992 51 1 3.9367 0.3027 -1.1584 52 1 3.9385 -1.3179 -0.4162 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714156271.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:33:01 Heat of formation + Delta-G solvation = 19.245941 kcal Electronic energy + Delta-G solvation = -29192.646448 eV Core-core repulsion = 25386.004948 eV Total energy + Delta-G solvation = -3806.641500 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.23008 -39.96490 -38.26080 -35.59219 -34.94113 -33.18297 -31.90510 -31.10735 -30.52779 -28.98142 -28.88695 -26.82988 -25.30226 -23.73811 -22.75089 -22.22065 -20.58471 -20.44437 -20.32851 -20.08078 -19.37360 -17.76062 -16.90648 -16.73057 -16.09256 -15.88465 -15.46528 -14.78415 -14.61577 -14.27714 -14.04953 -13.93298 -13.74812 -13.55728 -13.35927 -13.26310 -12.96247 -12.83250 -12.62982 -12.44649 -12.25402 -12.18753 -12.13883 -12.02795 -11.85269 -11.65008 -11.43118 -11.28237 -11.09520 -10.81911 -10.55843 -10.47392 -10.16032 -9.99012 -9.78064 -9.71701 -9.48957 -8.92906 -8.73728 -8.68221 -8.27571 -7.03310 -6.02874 -3.38069 2.15661 2.69820 2.76793 2.95233 3.19885 3.29666 3.41235 3.46272 4.40794 4.43943 4.51340 4.65796 4.71709 4.91536 4.95716 5.04757 5.10057 5.11634 5.13070 5.18818 5.26921 5.32354 5.36418 5.43124 5.45420 5.52929 5.57060 5.61231 5.74612 5.84114 5.91164 5.96534 5.98470 6.04980 6.11018 6.16603 6.20142 6.24272 6.27913 6.31524 6.52210 6.53624 6.59101 6.66535 6.72264 6.87751 6.93077 7.11791 7.25712 7.60239 7.89344 8.25618 8.29858 8.87424 9.64655 10.03657 11.12993 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.013571 B = 0.002868 C = 0.002488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2062.660275 B = 9759.452803 C =11251.333818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.145 3.855 3 H 0.084 0.916 4 N -0.721 5.721 5 C 0.515 3.485 6 O -0.546 6.546 7 C -0.143 4.143 8 C -0.117 4.117 9 C 0.103 3.897 10 N -0.446 5.446 11 C -0.014 4.014 12 C -0.206 4.206 13 C -0.206 4.206 14 C -0.016 4.016 15 C -0.112 4.112 16 H 0.078 0.922 17 C -0.103 4.103 18 C -0.134 4.134 19 C 0.146 3.854 20 N -0.606 5.606 21 C -0.257 4.257 22 H 0.086 0.914 23 C 0.023 3.977 24 N -0.908 5.908 25 Si 0.882 3.118 26 H -0.290 1.290 27 H -0.304 1.304 28 H -0.273 1.273 29 C 0.136 3.864 30 H 0.055 0.945 31 H 0.068 0.932 32 H 0.055 0.945 33 H 0.403 0.597 34 H 0.097 0.903 35 H 0.098 0.902 36 H 0.078 0.922 37 H 0.077 0.923 38 H 0.090 0.910 39 H 0.091 0.909 40 H 0.159 0.841 41 H 0.133 0.867 42 H 0.132 0.868 43 H 0.158 0.842 44 H 0.057 0.943 45 H 0.057 0.943 46 H 0.062 0.938 47 H 0.055 0.945 48 H 0.062 0.938 49 H 0.021 0.979 50 H 0.262 0.738 51 H 0.023 0.977 52 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.968 5.662 11.823 17.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.040 3.960 3 H 0.102 0.898 4 N -0.371 5.371 5 C 0.301 3.699 6 O -0.424 6.424 7 C -0.184 4.184 8 C -0.156 4.156 9 C -0.019 4.019 10 N -0.121 5.121 11 C -0.144 4.144 12 C -0.230 4.230 13 C -0.230 4.230 14 C -0.146 4.146 15 C -0.133 4.133 16 H 0.096 0.904 17 C -0.141 4.141 18 C -0.174 4.174 19 C 0.020 3.980 20 N -0.329 5.329 21 C -0.385 4.385 22 H 0.104 0.896 23 C -0.176 4.176 24 N -0.551 5.551 25 Si 0.713 3.287 26 H -0.218 1.218 27 H -0.232 1.232 28 H -0.198 1.198 29 C 0.010 3.990 30 H 0.074 0.926 31 H 0.086 0.914 32 H 0.075 0.925 33 H 0.238 0.762 34 H 0.115 0.885 35 H 0.117 0.883 36 H 0.096 0.904 37 H 0.096 0.904 38 H 0.109 0.891 39 H 0.110 0.890 40 H 0.177 0.823 41 H 0.151 0.849 42 H 0.150 0.850 43 H 0.176 0.824 44 H 0.075 0.925 45 H 0.075 0.925 46 H 0.080 0.920 47 H 0.074 0.926 48 H 0.080 0.920 49 H 0.039 0.961 50 H 0.072 0.928 51 H 0.041 0.959 52 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -11.033 6.146 11.627 17.166 hybrid contribution 0.491 0.256 0.638 0.845 sum -10.542 6.401 12.265 17.393 Atomic orbital electron populations 1.22188 0.95520 1.01942 1.02148 1.21034 0.93610 0.97439 0.83870 0.89789 1.46141 1.66899 1.14493 1.09613 1.20488 0.77387 0.87335 0.84675 1.90688 1.50430 1.15977 1.85324 1.21616 1.03965 0.99606 0.93203 1.21679 1.03636 0.98374 0.91899 1.21935 1.03818 0.91178 0.84995 1.44158 1.11769 1.32875 1.23274 1.21875 0.93275 0.98479 1.00764 1.20892 0.97243 1.04771 1.00138 1.20884 0.96862 1.02733 1.02549 1.21821 0.94182 1.04141 0.94468 1.21992 0.98916 0.99728 0.92677 0.90377 1.21455 0.99355 0.98937 0.94360 1.21992 0.98648 1.00304 0.96413 1.20956 0.91296 0.96513 0.89254 1.44357 1.50369 1.38774 0.99428 1.18946 1.10171 1.01387 1.08020 0.89646 1.25275 0.97489 0.96505 0.98315 1.69834 1.32845 1.21446 1.30972 0.86989 0.76377 0.84934 0.80423 1.21771 1.23224 1.19795 1.21327 0.90751 0.96810 0.90123 0.92622 0.91355 0.92547 0.76193 0.88514 0.88342 0.90362 0.90404 0.89132 0.89038 0.82338 0.84941 0.84972 0.82423 0.92455 0.92464 0.91967 0.92619 0.91963 0.96062 0.92797 0.95948 0.91024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.97 9.13 37.16 0.34 -1.63 16 2 C 0.15 2.13 2.16 -67.93 -0.15 1.98 16 3 H 0.08 1.39 7.58 -51.93 -0.39 1.00 16 4 N -0.72 -10.21 4.48 -53.81 -0.24 -10.45 16 5 C 0.51 7.42 7.79 -10.98 -0.09 7.34 16 6 O -0.55 -9.68 15.65 5.56 0.09 -9.60 16 7 C -0.14 -1.49 5.70 -27.88 -0.16 -1.65 16 8 C -0.12 -1.22 4.83 -26.73 -0.13 -1.35 16 9 C 0.10 0.87 6.09 -4.04 -0.02 0.84 16 10 N -0.45 -4.68 2.75 -117.12 -0.32 -5.00 16 11 C -0.01 -0.15 11.43 -16.75 -0.19 -0.34 16 12 C -0.21 -2.29 10.86 -39.78 -0.43 -2.73 16 13 C -0.21 -2.24 10.86 -39.78 -0.43 -2.67 16 14 C -0.02 -0.17 11.43 -16.75 -0.19 -0.36 16 15 C -0.11 -1.81 1.97 -90.50 -0.18 -1.99 16 16 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 17 C -0.10 -1.49 4.85 -26.69 -0.13 -1.62 16 18 C -0.13 -2.07 6.08 -26.61 -0.16 -2.23 16 19 C 0.15 2.78 6.52 -3.71 -0.02 2.75 16 20 N -0.61 -13.85 2.77 -172.31 -0.48 -14.33 16 21 C -0.26 -6.93 10.03 -15.06 -0.15 -7.08 16 22 H 0.09 2.47 8.06 -52.49 -0.42 2.05 16 23 C 0.02 0.64 5.23 -17.43 -0.09 0.55 16 24 N -0.91 -26.81 13.97 55.49 0.78 -26.03 16 25 Si 0.88 21.86 24.35 -169.99 -4.14 17.72 16 26 H -0.29 -6.66 6.62 56.52 0.37 -6.29 16 27 H -0.30 -7.74 7.11 56.52 0.40 -7.34 16 28 H -0.27 -6.89 6.64 56.52 0.38 -6.52 16 29 C 0.14 2.80 3.24 -3.70 -0.01 2.79 16 30 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.07 0.77 6.40 -51.93 -0.33 0.43 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.40 5.27 8.42 -40.82 -0.34 4.92 16 34 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.08 0.98 8.10 -51.93 -0.42 0.56 16 37 H 0.08 0.89 8.10 -51.93 -0.42 0.47 16 38 H 0.09 0.59 8.14 -51.92 -0.42 0.17 16 39 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.16 1.44 8.06 -52.49 -0.42 1.02 16 41 H 0.13 1.26 8.06 -52.49 -0.42 0.83 16 42 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 43 H 0.16 1.24 8.06 -52.49 -0.42 0.82 16 44 H 0.06 0.71 6.36 -51.92 -0.33 0.37 16 45 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 46 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 47 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 48 H 0.06 1.18 7.93 -51.93 -0.41 0.77 16 49 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 50 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 51 H 0.02 0.49 7.07 -51.93 -0.37 0.13 16 52 H 0.07 1.59 4.02 -51.93 -0.21 1.38 16 LS Contribution 404.67 15.07 6.10 6.10 Total: -1.00 -33.01 404.67 -9.60 -42.61 By element: Atomic # 1 Polarization: 15.57 SS G_CDS: -9.18 Total: 6.39 kcal Atomic # 6 Polarization: -5.20 SS G_CDS: -2.20 Total: -7.40 kcal Atomic # 7 Polarization: -55.55 SS G_CDS: -0.26 Total: -55.82 kcal Atomic # 8 Polarization: -9.68 SS G_CDS: 0.09 Total: -9.60 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.14 Total: 17.72 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -33.01 -9.60 -42.61 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714156271.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.853 kcal (2) G-P(sol) polarization free energy of solvation -33.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.607 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds