Wall clock time and date at job start Tue Mar 31 2020 17:49:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08990 * 109.47379 * 2 1 4 4 C 1.53001 * 109.46699 * 120.00249 * 2 1 3 5 5 N 1.46500 * 109.47147 * 294.99327 * 4 2 1 6 6 C 1.36929 * 120.00239 * 180.02562 * 5 4 2 7 7 H 1.08001 * 119.99805 * 359.97438 * 6 5 4 8 8 C 1.38816 * 120.00273 * 180.02562 * 6 5 4 9 9 N 1.31617 * 119.99788 * 179.97438 * 8 6 5 10 10 Si 1.86804 * 119.99788 * 359.97438 * 8 6 5 11 11 H 1.48498 * 109.46907 * 90.00073 * 10 8 6 12 12 H 1.48498 * 109.46705 * 209.99862 * 10 8 6 13 13 H 1.48498 * 109.47021 * 330.00138 * 10 8 6 14 14 C 1.53004 * 109.46749 * 239.99827 * 2 1 3 15 15 N 1.46497 * 109.47051 * 65.00492 * 14 2 1 16 16 C 1.34776 * 119.99970 * 180.02562 * 15 14 2 17 17 O 1.21561 * 119.99957 * 359.97438 * 16 15 14 18 18 C 1.47839 * 120.00562 * 179.97438 * 16 15 14 19 19 C 1.39600 * 120.14168 * 5.73590 * 18 16 15 20 20 C 1.37937 * 119.85526 * 180.29466 * 19 18 16 21 21 C 1.38380 * 120.14203 * 359.68891 * 20 19 18 22 22 C 1.38338 * 120.29597 * 0.02562 * 21 20 19 23 23 C 1.37979 * 120.14223 * 0.02562 * 22 21 20 24 24 C 1.50700 * 120.07366 * 180.02562 * 23 22 21 25 25 C 1.53003 * 109.47261 * 98.37971 * 24 23 22 26 26 N 1.46902 * 109.47153 * 180.02562 * 25 24 23 27 27 C 1.46891 * 110.99892 * 170.00181 * 26 25 24 28 28 C 1.46902 * 110.99980 * 293.95290 * 26 25 24 29 29 H 1.09003 * 109.47295 * 300.00735 * 1 2 3 30 30 H 1.09006 * 109.46924 * 60.00024 * 1 2 3 31 31 H 1.09002 * 109.47750 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47425 * 54.99607 * 4 2 1 33 33 H 1.09001 * 109.46452 * 174.99694 * 4 2 1 34 34 H 0.97005 * 119.99770 * 0.02562 * 5 4 2 35 35 H 0.97006 * 119.99778 * 180.02562 * 9 8 6 36 36 H 1.08998 * 109.47163 * 305.00216 * 14 2 1 37 37 H 1.09002 * 109.47112 * 185.00554 * 14 2 1 38 38 H 0.97001 * 120.00277 * 359.97438 * 15 14 2 39 39 H 1.08002 * 120.07235 * 0.02562 * 19 18 16 40 40 H 1.07999 * 119.92990 * 179.70050 * 20 19 18 41 41 H 1.08007 * 119.85429 * 180.02562 * 21 20 19 42 42 H 1.07997 * 119.93146 * 179.97438 * 22 21 20 43 43 H 1.09004 * 109.47354 * 218.37958 * 24 23 22 44 44 H 1.09004 * 109.47233 * 338.37964 * 24 23 22 45 45 H 1.08997 * 109.46914 * 299.99840 * 25 24 23 46 46 H 1.09004 * 109.47002 * 59.99852 * 25 24 23 47 47 H 1.09003 * 109.47514 * 59.99718 * 27 26 25 48 48 H 1.09005 * 109.47137 * 180.02562 * 27 26 25 49 49 H 1.09006 * 109.47320 * 299.99939 * 27 26 25 50 50 H 1.08998 * 109.46839 * 59.99984 * 28 26 25 51 51 H 1.08999 * 109.46887 * 180.02562 * 28 26 25 52 52 H 1.08998 * 109.46915 * 300.00331 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 7 1.6524 0.0353 2.4424 6 6 2.0018 -0.4203 3.6855 7 1 2.5627 -1.3377 3.7864 8 6 1.6342 0.2964 4.8161 9 7 1.9697 -0.1419 6.0109 10 14 0.6634 1.8828 4.6415 11 1 -0.7899 1.5789 4.6655 12 1 0.9973 2.7936 5.7659 13 1 1.0113 2.5369 3.3545 14 6 2.0399 -0.7213 -1.2493 15 7 1.6524 0.0353 -2.4424 16 6 1.9955 -0.4137 -3.6660 17 8 2.6268 -1.4462 -3.7795 18 6 1.6040 0.3495 -4.8701 19 6 0.9847 1.5939 -4.7407 20 6 0.6164 2.2982 -5.8681 21 6 0.8654 1.7766 -7.1254 22 6 1.4840 0.5467 -7.2608 23 6 1.8565 -0.1685 -6.1411 24 6 2.5309 -1.5079 -6.2904 25 6 4.0443 -1.3360 -6.1449 26 7 4.7016 -2.6416 -6.2910 27 6 6.1589 -2.4886 -6.3943 28 6 4.3437 -3.5381 -5.1836 29 1 -0.3634 0.5140 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3635 -1.0276 -0.0005 32 1 1.6052 -1.7198 1.2952 33 1 3.1262 -0.7996 1.2055 34 1 1.1483 0.8591 2.3517 35 1 1.7125 0.3587 6.8010 36 1 1.6052 -1.7198 -1.2952 37 1 3.1262 -0.7997 -1.2056 38 1 1.1483 0.8591 -2.3518 39 1 0.7905 2.0024 -3.7600 40 1 0.1329 3.2588 -5.7694 41 1 0.5754 2.3322 -8.0051 42 1 1.6751 0.1450 -8.2449 43 1 2.1664 -2.1862 -5.5188 44 1 2.3050 -1.9209 -7.2735 45 1 4.4087 -0.6578 -6.9164 46 1 4.2702 -0.9230 -5.1618 47 1 6.5383 -2.0050 -5.4941 48 1 6.6206 -3.4701 -6.5021 49 1 6.3993 -1.8770 -7.2641 50 1 3.2643 -3.6895 -5.1731 51 1 4.8442 -4.4972 -5.3164 52 1 4.6573 -3.0925 -4.2396 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714415545.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:49:26 Heat of formation + Delta-G solvation = -18.752174 kcal Electronic energy + Delta-G solvation = -28737.807631 eV Core-core repulsion = 24929.518409 eV Total energy + Delta-G solvation = -3808.289222 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -41.51372 -39.51090 -38.42944 -38.18202 -36.11171 -34.42770 -33.77457 -32.73501 -31.71955 -29.82286 -28.45275 -27.91754 -27.28863 -25.59110 -24.62845 -23.80323 -22.63468 -21.78115 -21.69526 -21.14639 -19.70143 -18.63780 -17.35308 -17.07262 -16.61578 -16.56284 -16.54340 -16.20466 -15.87054 -15.68497 -15.66204 -15.48166 -15.33699 -14.96921 -14.53949 -14.25869 -14.01755 -13.89599 -13.76266 -13.63854 -13.53511 -13.24329 -13.21052 -12.88098 -12.75639 -12.67432 -12.52956 -12.34289 -12.28214 -12.11074 -12.01034 -11.88966 -11.77401 -11.75663 -11.67139 -11.00114 -10.61601 -10.16429 -9.86377 -9.65849 -9.32164 -9.31318 -8.04143 -5.38471 -0.09061 0.41320 1.36071 1.41336 1.48572 1.91833 2.13627 2.47537 2.84720 3.09072 3.26982 3.52359 3.70645 3.86800 3.90510 3.91189 3.99636 4.11317 4.16108 4.17458 4.29433 4.36209 4.49385 4.50409 4.51756 4.54690 4.66684 4.67418 4.70945 4.75272 4.78853 4.89187 4.90715 4.95377 4.99164 5.00393 5.03740 5.07036 5.12336 5.23234 5.28244 5.37483 5.39548 5.49432 5.53312 5.62702 5.73716 5.97062 6.06116 6.12746 6.19411 6.54084 7.06230 7.23390 7.80969 8.01909 9.17518 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.013483 B = 0.002462 C = 0.002144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2076.252355 B =11370.507638 C =13053.938946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.098 4.098 3 H 0.086 0.914 4 C 0.160 3.840 5 N -0.754 5.754 6 C -0.238 4.238 7 H 0.052 0.948 8 C -0.067 4.067 9 N -0.985 5.985 10 Si 0.959 3.041 11 H -0.275 1.275 12 H -0.296 1.296 13 H -0.247 1.247 14 C 0.142 3.858 15 N -0.713 5.713 16 C 0.547 3.453 17 O -0.553 6.553 18 C -0.154 4.154 19 C -0.088 4.088 20 C -0.133 4.133 21 C -0.088 4.088 22 C -0.131 4.131 23 C -0.037 4.037 24 C -0.077 4.077 25 C 0.080 3.920 26 N -0.552 5.552 27 C 0.024 3.976 28 C 0.039 3.961 29 H 0.049 0.951 30 H 0.077 0.923 31 H 0.053 0.947 32 H 0.025 0.975 33 H 0.022 0.978 34 H 0.368 0.632 35 H 0.258 0.742 36 H 0.064 0.936 37 H 0.058 0.942 38 H 0.410 0.590 39 H 0.142 0.858 40 H 0.154 0.846 41 H 0.154 0.846 42 H 0.145 0.855 43 H 0.081 0.919 44 H 0.077 0.923 45 H 0.071 0.929 46 H 0.020 0.980 47 H 0.014 0.986 48 H 0.077 0.923 49 H 0.078 0.922 50 H 0.063 0.937 51 H 0.070 0.930 52 H 0.011 0.989 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.348 5.253 -34.488 34.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.117 4.117 3 H 0.104 0.896 4 C 0.034 3.966 5 N -0.400 5.400 6 C -0.369 4.369 7 H 0.071 0.929 8 C -0.258 4.258 9 N -0.636 5.636 10 Si 0.785 3.215 11 H -0.201 1.201 12 H -0.223 1.223 13 H -0.171 1.171 14 C 0.017 3.983 15 N -0.366 5.366 16 C 0.336 3.664 17 O -0.433 6.433 18 C -0.157 4.157 19 C -0.107 4.107 20 C -0.151 4.151 21 C -0.106 4.106 22 C -0.149 4.149 23 C -0.039 4.039 24 C -0.114 4.114 25 C -0.048 4.048 26 N -0.276 5.276 27 C -0.124 4.124 28 C -0.109 4.109 29 H 0.068 0.932 30 H 0.096 0.904 31 H 0.072 0.928 32 H 0.043 0.957 33 H 0.040 0.960 34 H 0.202 0.798 35 H 0.067 0.933 36 H 0.083 0.917 37 H 0.077 0.923 38 H 0.248 0.752 39 H 0.160 0.840 40 H 0.171 0.829 41 H 0.172 0.828 42 H 0.163 0.837 43 H 0.099 0.901 44 H 0.095 0.905 45 H 0.089 0.911 46 H 0.039 0.961 47 H 0.033 0.967 48 H 0.096 0.904 49 H 0.096 0.904 50 H 0.082 0.918 51 H 0.088 0.912 52 H 0.029 0.971 Dipole moment (debyes) X Y Z Total from point charges -1.950 4.141 -34.835 35.134 hybrid contribution -0.166 1.212 1.844 2.213 sum -2.116 5.353 -32.990 33.489 Atomic orbital electron populations 1.21802 0.93581 1.02378 1.02092 1.21396 0.97417 1.00351 0.92580 0.89612 1.20686 0.96835 0.94217 0.84908 1.42624 1.67809 1.27678 1.01882 1.19028 1.28222 1.05669 0.84011 0.92948 1.25588 1.02666 1.03013 0.94529 1.69901 1.53343 1.42341 0.97972 0.85356 0.78741 0.79462 0.77925 1.20132 1.22297 1.17122 1.21082 0.99420 0.95036 0.82750 1.45828 1.57657 1.28059 1.05014 1.18658 0.79144 0.84870 0.83746 1.90736 1.40781 1.25242 1.86580 1.19814 1.05991 0.97241 0.92673 1.21560 0.95715 0.92728 1.00660 1.21464 1.00484 1.01199 0.91925 1.21743 0.95278 0.94855 0.98743 1.21326 0.99668 0.95491 0.98392 1.20053 0.95642 0.96092 0.92102 1.20667 0.94072 0.93821 1.02837 1.21863 0.93757 0.90057 0.99143 1.62082 1.09018 1.12517 1.43952 1.22420 0.86992 1.02570 1.00457 1.22227 1.01563 0.96195 0.90931 0.93233 0.90370 0.92783 0.95703 0.96031 0.79767 0.93281 0.91749 0.92330 0.75236 0.84034 0.82875 0.82785 0.83737 0.90129 0.90476 0.91089 0.96144 0.96713 0.90440 0.90364 0.91831 0.91150 0.97050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.37 8.94 71.98 0.64 -2.72 16 2 C -0.10 -2.59 2.46 -10.79 -0.03 -2.61 16 3 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 4 C 0.16 5.95 5.65 86.38 0.49 6.44 16 5 N -0.75 -34.65 5.13 -343.45 -1.76 -36.42 16 6 C -0.24 -13.73 10.47 84.04 0.88 -12.85 16 7 H 0.05 3.34 8.06 -2.91 -0.02 3.32 16 8 C -0.07 -3.94 5.50 84.86 0.47 -3.48 16 9 N -0.99 -63.63 13.97 21.65 0.30 -63.33 16 10 Si 0.96 44.70 27.74 68.60 1.90 46.60 16 11 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 12 H -0.30 -14.04 7.11 99.48 0.71 -13.33 16 13 H -0.25 -10.13 6.52 99.48 0.65 -9.49 16 14 C 0.14 3.45 5.06 86.38 0.44 3.88 16 15 N -0.71 -14.35 5.23 -465.97 -2.44 -16.79 16 16 C 0.55 12.73 7.64 86.78 0.66 13.40 16 17 O -0.55 -15.82 10.60 -3.91 -0.04 -15.86 16 18 C -0.15 -2.93 5.87 -20.09 -0.12 -3.05 16 19 C -0.09 -1.19 9.53 22.53 0.21 -0.98 16 20 C -0.13 -1.36 10.03 22.23 0.22 -1.13 16 21 C -0.09 -0.87 10.04 22.33 0.22 -0.64 16 22 C -0.13 -1.71 9.66 22.23 0.21 -1.50 16 23 C -0.04 -0.68 5.17 -19.61 -0.10 -0.78 16 24 C -0.08 -1.57 4.53 29.85 0.14 -1.43 16 25 C 0.08 1.72 4.49 86.30 0.39 2.11 16 26 N -0.55 -11.89 5.02 -948.84 -4.76 -16.65 16 27 C 0.02 0.42 9.57 127.69 1.22 1.64 16 28 C 0.04 0.90 8.54 127.69 1.09 1.99 16 29 H 0.05 1.34 7.18 -2.39 -0.02 1.32 16 30 H 0.08 1.34 7.18 -2.38 -0.02 1.33 16 31 H 0.05 1.34 8.14 -2.39 -0.02 1.33 16 32 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.37 15.75 4.71 -92.70 -0.44 15.32 16 35 H 0.26 15.83 8.31 -92.70 -0.77 15.06 16 36 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 38 H 0.41 6.07 5.72 -92.71 -0.53 5.54 16 39 H 0.14 1.32 6.45 -2.91 -0.02 1.31 16 40 H 0.15 0.76 8.06 -2.91 -0.02 0.74 16 41 H 0.15 0.63 8.06 -2.91 -0.02 0.60 16 42 H 0.14 1.35 8.05 -2.91 -0.02 1.32 16 43 H 0.08 2.04 4.36 -2.39 -0.01 2.03 16 44 H 0.08 1.40 8.02 -2.38 -0.02 1.38 16 45 H 0.07 1.36 8.06 -2.39 -0.02 1.34 16 46 H 0.02 0.55 6.57 -2.38 -0.02 0.53 16 47 H 0.01 0.28 8.14 -2.39 -0.02 0.26 16 48 H 0.08 1.19 8.12 -2.38 -0.02 1.17 16 49 H 0.08 1.16 8.12 -2.38 -0.02 1.14 16 50 H 0.06 1.56 6.46 -2.39 -0.02 1.54 16 51 H 0.07 1.39 8.12 -2.39 -0.02 1.37 16 52 H 0.01 0.30 7.94 -2.39 -0.02 0.28 16 Total: -1.00 -73.52 406.13 0.13 -73.39 By element: Atomic # 1 Polarization: 30.89 SS G_CDS: -0.12 Total: 30.77 kcal Atomic # 6 Polarization: -8.75 SS G_CDS: 7.04 Total: -1.71 kcal Atomic # 7 Polarization: -124.53 SS G_CDS: -8.66 Total: -133.19 kcal Atomic # 8 Polarization: -15.82 SS G_CDS: -0.04 Total: -15.86 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 1.90 Total: 46.60 kcal Total: -73.52 0.13 -73.39 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714415545.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.635 kcal (2) G-P(sol) polarization free energy of solvation -73.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds