Wall clock time and date at job start Tue Mar 31 2020 17:49:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09006 * 109.47231 * 2 1 4 4 C 1.53001 * 109.47372 * 239.99820 * 2 1 3 5 5 N 1.46496 * 109.46762 * 65.00125 * 4 2 1 6 6 C 1.36941 * 119.99689 * 180.02562 * 5 4 2 7 7 H 1.07993 * 120.00033 * 359.97438 * 6 5 4 8 8 C 1.38811 * 120.00048 * 180.02562 * 6 5 4 9 9 N 1.31626 * 119.99778 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 120.00262 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47013 * 359.97438 * 10 8 6 12 12 H 1.48499 * 109.47398 * 119.99608 * 10 8 6 13 13 H 1.48500 * 109.47131 * 239.99813 * 10 8 6 14 14 C 1.53007 * 109.46998 * 119.99609 * 2 1 3 15 15 N 1.46494 * 109.47468 * 295.00129 * 14 2 1 16 16 C 1.34772 * 120.00289 * 180.02562 * 15 14 2 17 17 O 1.21552 * 119.99923 * 359.97438 * 16 15 14 18 18 C 1.47847 * 120.00423 * 180.02562 * 16 15 14 19 19 C 1.39597 * 120.14091 * 5.96479 * 18 16 15 20 20 C 1.37940 * 119.85403 * 179.97438 * 19 18 16 21 21 C 1.38379 * 120.14319 * 0.02562 * 20 19 18 22 22 C 1.38340 * 120.29452 * 359.97438 * 21 20 19 23 23 C 1.37979 * 120.14471 * 0.02562 * 22 21 20 24 24 C 1.50698 * 120.07689 * 179.97438 * 23 22 21 25 25 C 1.53003 * 109.47433 * 96.23648 * 24 23 22 26 26 N 1.46896 * 109.47131 * 179.97438 * 25 24 23 27 27 C 1.46899 * 110.99805 * 66.04968 * 26 25 24 28 28 C 1.46901 * 111.00099 * 189.99773 * 26 25 24 29 29 H 1.08996 * 109.46970 * 59.99936 * 1 2 3 30 30 H 1.08994 * 109.47033 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46951 * 299.99978 * 1 2 3 32 32 H 1.09000 * 109.46874 * 184.99807 * 4 2 1 33 33 H 1.09005 * 109.46792 * 305.00199 * 4 2 1 34 34 H 0.96996 * 120.00302 * 359.97438 * 5 4 2 35 35 H 0.96998 * 119.99986 * 180.02562 * 9 8 6 36 36 H 1.08998 * 109.46824 * 175.00270 * 14 2 1 37 37 H 1.09004 * 109.46588 * 55.00333 * 14 2 1 38 38 H 0.97003 * 119.99613 * 359.97438 * 15 14 2 39 39 H 1.07997 * 120.07503 * 359.96070 * 19 18 16 40 40 H 1.07995 * 119.92646 * 179.72099 * 20 19 18 41 41 H 1.08002 * 119.85695 * 179.97438 * 21 20 19 42 42 H 1.07997 * 119.92930 * 180.02562 * 22 21 20 43 43 H 1.09000 * 109.46900 * 216.24132 * 24 23 22 44 44 H 1.08998 * 109.46716 * 336.23630 * 24 23 22 45 45 H 1.08992 * 109.46940 * 300.00456 * 25 24 23 46 46 H 1.09005 * 109.46859 * 60.00026 * 25 24 23 47 47 H 1.08998 * 109.47413 * 59.99783 * 27 26 25 48 48 H 1.09001 * 109.47311 * 180.02562 * 27 26 25 49 49 H 1.09003 * 109.47106 * 299.99768 * 27 26 25 50 50 H 1.09007 * 109.46407 * 60.00732 * 28 26 25 51 51 H 1.09001 * 109.47085 * 180.02562 * 28 26 25 52 52 H 1.08996 * 109.47299 * 300.00611 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 1.6525 0.0353 -2.4423 6 6 2.0012 -0.4209 -3.6855 7 1 2.5622 -1.3381 -3.7864 8 6 1.6345 0.2963 -4.8160 9 7 0.9512 1.4145 -4.6930 10 14 2.1095 -0.3263 -6.5119 11 1 2.8686 -1.5957 -6.3785 12 1 0.8823 -0.5648 -7.3134 13 1 2.9558 0.6868 -7.1921 14 6 2.0400 -0.7212 1.2494 15 7 1.6525 0.0354 2.4424 16 6 1.9964 -0.4130 3.6660 17 8 2.6279 -1.4454 3.7796 18 6 1.6048 0.3503 4.8701 19 6 0.7745 1.4664 4.7533 20 6 0.4124 2.1739 5.8807 21 6 0.8708 1.7797 7.1255 22 6 1.6939 0.6746 7.2482 23 6 2.0636 -0.0418 6.1284 24 6 2.9608 -1.2451 6.2639 25 6 2.1079 -2.5144 6.3123 26 7 2.9825 -3.6873 6.4437 27 6 3.6773 -3.6835 7.7380 28 6 2.2255 -4.9322 6.2563 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 3.1264 -0.7994 -1.2055 33 1 1.6054 -1.7199 -1.2951 34 1 1.1484 0.8590 -2.3517 35 1 0.6946 1.9155 -5.4830 36 1 3.1263 -0.7994 1.2057 37 1 1.6054 -1.7198 1.2952 38 1 1.1489 0.8595 2.3517 39 1 0.4166 1.7754 3.7823 40 1 -0.2262 3.0401 5.7912 41 1 0.5848 2.3372 8.0051 42 1 2.0479 0.3720 8.2226 43 1 3.6356 -1.2931 5.4092 44 1 3.5425 -1.1629 7.1819 45 1 1.4331 -2.4663 7.1669 46 1 1.5261 -2.5965 5.3942 47 1 2.9439 -3.7023 8.5441 48 1 4.3183 -4.5622 7.8089 49 1 4.2856 -2.7828 7.8212 50 1 1.7784 -4.9393 5.2622 51 1 2.8969 -5.7847 6.3592 52 1 1.4395 -4.9962 7.0087 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714415546.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:49:30 Heat of formation + Delta-G solvation = -20.542812 kcal Electronic energy + Delta-G solvation = -28435.422806 eV Core-core repulsion = 24627.055937 eV Total energy + Delta-G solvation = -3808.366870 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.48766 -39.50643 -38.40467 -38.11799 -36.02854 -34.39999 -33.73452 -32.43372 -31.49887 -29.82468 -28.46728 -27.80436 -27.14344 -25.62570 -24.75458 -23.98865 -22.65985 -21.69865 -21.65962 -21.04687 -19.30234 -18.55803 -17.33852 -16.97211 -16.70173 -16.55881 -16.48852 -16.10254 -15.89870 -15.76553 -15.58641 -15.39207 -15.32287 -14.96508 -14.42559 -14.21589 -13.88765 -13.86300 -13.77251 -13.57782 -13.49094 -13.22239 -12.96226 -12.83175 -12.76536 -12.71439 -12.52627 -12.41310 -12.18833 -12.13277 -12.02284 -11.92997 -11.72367 -11.66618 -11.63445 -10.95647 -10.56616 -10.13000 -9.85763 -9.66666 -9.24228 -8.99485 -7.95777 -5.23943 -0.08504 0.40765 1.47746 1.48040 1.58406 1.93599 2.16586 2.56663 2.85321 3.08648 3.38019 3.70269 3.73641 3.87088 3.92925 3.96384 4.06421 4.08612 4.23454 4.24420 4.33069 4.34522 4.47159 4.47801 4.53933 4.54412 4.62718 4.68561 4.71420 4.72513 4.77369 4.89858 4.93589 4.96122 4.97157 5.01869 5.03381 5.11881 5.13844 5.22601 5.35048 5.39074 5.43734 5.50270 5.52267 5.52675 5.65562 5.97883 6.11654 6.17226 6.27242 6.56601 7.26364 7.33978 8.08869 8.33478 9.27878 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.014562 B = 0.002191 C = 0.001952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1922.389578 B =12776.747522 C =14341.148975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.094 4.094 3 H 0.078 0.922 4 C 0.157 3.843 5 N -0.741 5.741 6 C -0.245 4.245 7 H 0.073 0.927 8 C -0.075 4.075 9 N -0.968 5.968 10 Si 0.973 3.027 11 H -0.268 1.268 12 H -0.292 1.292 13 H -0.292 1.292 14 C 0.142 3.858 15 N -0.713 5.713 16 C 0.545 3.455 17 O -0.551 6.551 18 C -0.153 4.153 19 C -0.088 4.088 20 C -0.132 4.132 21 C -0.088 4.088 22 C -0.132 4.132 23 C -0.039 4.039 24 C -0.078 4.078 25 C 0.086 3.914 26 N -0.564 5.564 27 C 0.022 3.978 28 C 0.028 3.972 29 H 0.043 0.957 30 H 0.051 0.949 31 H 0.074 0.926 32 H 0.019 0.981 33 H 0.021 0.979 34 H 0.377 0.623 35 H 0.252 0.748 36 H 0.060 0.940 37 H 0.063 0.937 38 H 0.409 0.591 39 H 0.141 0.859 40 H 0.154 0.846 41 H 0.155 0.845 42 H 0.145 0.855 43 H 0.081 0.919 44 H 0.076 0.924 45 H 0.030 0.970 46 H 0.055 0.945 47 H 0.031 0.969 48 H 0.073 0.927 49 H 0.072 0.928 50 H 0.055 0.945 51 H 0.077 0.923 52 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.220 -1.448 32.028 32.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.113 4.113 3 H 0.096 0.904 4 C 0.030 3.970 5 N -0.384 5.384 6 C -0.376 4.376 7 H 0.091 0.909 8 C -0.267 4.267 9 N -0.618 5.618 10 Si 0.802 3.198 11 H -0.193 1.193 12 H -0.219 1.219 13 H -0.220 1.220 14 C 0.018 3.982 15 N -0.366 5.366 16 C 0.334 3.666 17 O -0.431 6.431 18 C -0.156 4.156 19 C -0.107 4.107 20 C -0.150 4.150 21 C -0.106 4.106 22 C -0.149 4.149 23 C -0.040 4.040 24 C -0.115 4.115 25 C -0.042 4.042 26 N -0.288 5.288 27 C -0.125 4.125 28 C -0.120 4.120 29 H 0.062 0.938 30 H 0.070 0.930 31 H 0.093 0.907 32 H 0.037 0.963 33 H 0.039 0.961 34 H 0.209 0.791 35 H 0.060 0.940 36 H 0.078 0.922 37 H 0.082 0.918 38 H 0.247 0.753 39 H 0.159 0.841 40 H 0.172 0.828 41 H 0.173 0.827 42 H 0.163 0.837 43 H 0.099 0.901 44 H 0.095 0.905 45 H 0.048 0.952 46 H 0.073 0.927 47 H 0.049 0.951 48 H 0.092 0.908 49 H 0.091 0.909 50 H 0.074 0.926 51 H 0.096 0.904 52 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -0.327 -2.318 31.595 31.682 hybrid contribution -0.771 0.308 -0.919 1.238 sum -1.098 -2.010 30.677 30.762 Atomic orbital electron populations 1.21718 0.93863 1.01919 1.01708 1.21336 0.97166 1.00022 0.92803 0.90400 1.20712 0.96495 0.94117 0.85640 1.42513 1.66773 1.27826 1.01336 1.19654 1.27727 1.05225 0.85043 0.90904 1.25546 1.01762 0.97923 1.01507 1.69810 1.45147 1.17856 1.29034 0.85082 0.77105 0.77602 0.80028 1.19275 1.21917 1.21957 1.21098 0.99465 0.94925 0.82727 1.45855 1.57599 1.28078 1.05094 1.18695 0.79228 0.84934 0.83779 1.90785 1.40640 1.25080 1.86586 1.19822 1.03863 0.99068 0.92850 1.21571 0.95381 0.93117 1.00616 1.21467 1.00774 1.00788 0.91991 1.21737 0.94693 0.95398 0.98755 1.21304 0.99285 0.96154 0.98197 1.20061 0.95791 0.96033 0.92131 1.20697 0.97189 0.90459 1.03169 1.21775 0.93563 0.89360 0.99477 1.61871 1.30910 1.02659 1.33358 1.22472 0.98451 1.03298 0.88325 1.22342 0.97133 0.91833 1.00680 0.93771 0.93002 0.90692 0.96309 0.96103 0.79060 0.93959 0.92197 0.91816 0.75325 0.84135 0.82846 0.82688 0.83721 0.90069 0.90549 0.95212 0.92655 0.95095 0.90793 0.90942 0.92593 0.90397 0.95181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.86 8.94 71.98 0.64 -3.22 16 2 C -0.09 -2.86 2.46 -10.79 -0.03 -2.89 16 3 H 0.08 2.38 8.14 -2.38 -0.02 2.36 16 4 C 0.16 6.31 5.65 86.38 0.49 6.80 16 5 N -0.74 -37.62 5.33 -343.46 -1.83 -39.45 16 6 C -0.24 -13.82 9.99 84.03 0.84 -12.98 16 7 H 0.07 4.00 7.83 -2.91 -0.02 3.98 16 8 C -0.08 -4.34 5.50 84.86 0.47 -3.87 16 9 N -0.97 -59.02 13.06 21.65 0.28 -58.73 16 10 Si 0.97 46.51 29.55 68.60 2.03 48.54 16 11 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 12 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 13 H -0.29 -13.92 7.11 99.48 0.71 -13.22 16 14 C 0.14 3.91 5.06 86.38 0.44 4.34 16 15 N -0.71 -16.58 5.23 -465.98 -2.44 -19.02 16 16 C 0.54 14.17 7.69 86.79 0.67 14.83 16 17 O -0.55 -17.73 11.73 -3.88 -0.05 -17.77 16 18 C -0.15 -3.22 5.87 -20.09 -0.12 -3.34 16 19 C -0.09 -1.37 9.53 22.53 0.21 -1.16 16 20 C -0.13 -1.55 10.03 22.23 0.22 -1.32 16 21 C -0.09 -0.95 10.04 22.33 0.22 -0.73 16 22 C -0.13 -1.83 9.66 22.23 0.21 -1.61 16 23 C -0.04 -0.76 5.17 -19.61 -0.10 -0.86 16 24 C -0.08 -1.68 4.52 29.85 0.13 -1.54 16 25 C 0.09 1.92 4.50 86.30 0.39 2.31 16 26 N -0.56 -12.28 5.02 -948.85 -4.76 -17.05 16 27 C 0.02 0.35 9.32 127.69 1.19 1.54 16 28 C 0.03 0.53 9.57 127.69 1.22 1.76 16 29 H 0.04 1.51 7.18 -2.39 -0.02 1.49 16 30 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.07 1.63 7.18 -2.39 -0.02 1.61 16 32 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.02 0.85 8.14 -2.38 -0.02 0.83 16 34 H 0.38 19.97 6.85 -92.71 -0.63 19.33 16 35 H 0.25 14.81 8.31 -92.71 -0.77 14.04 16 36 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 37 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 38 H 0.41 7.46 5.73 -92.71 -0.53 6.93 16 39 H 0.14 1.66 6.45 -2.91 -0.02 1.64 16 40 H 0.15 0.99 8.06 -2.91 -0.02 0.97 16 41 H 0.16 0.75 8.06 -2.91 -0.02 0.72 16 42 H 0.15 1.39 8.06 -2.91 -0.02 1.36 16 43 H 0.08 2.29 5.82 -2.39 -0.01 2.28 16 44 H 0.08 1.34 6.46 -2.39 -0.02 1.32 16 45 H 0.03 0.59 8.12 -2.39 -0.02 0.58 16 46 H 0.05 1.52 6.73 -2.38 -0.02 1.51 16 47 H 0.03 0.43 8.14 -2.39 -0.02 0.41 16 48 H 0.07 1.03 8.12 -2.39 -0.02 1.02 16 49 H 0.07 1.08 6.47 -2.39 -0.02 1.07 16 50 H 0.06 1.19 8.12 -2.38 -0.02 1.17 16 51 H 0.08 1.26 8.12 -2.39 -0.02 1.24 16 52 H 0.03 0.50 8.14 -2.39 -0.02 0.48 16 Total: -1.00 -71.20 411.56 0.09 -71.11 By element: Atomic # 1 Polarization: 34.55 SS G_CDS: -0.26 Total: 34.30 kcal Atomic # 6 Polarization: -9.03 SS G_CDS: 7.11 Total: -1.92 kcal Atomic # 7 Polarization: -125.50 SS G_CDS: -8.75 Total: -134.25 kcal Atomic # 8 Polarization: -17.73 SS G_CDS: -0.05 Total: -17.77 kcal Atomic # 14 Polarization: 46.51 SS G_CDS: 2.03 Total: 48.54 kcal Total: -71.20 0.09 -71.11 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714415546.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.565 kcal (2) G-P(sol) polarization free energy of solvation -71.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds