Wall clock time and date at job start Tue Mar 31 2020 17:57:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46501 * 109.46935 * 2 1 4 4 C 1.36451 * 124.84914 * 264.97477 * 3 2 1 5 5 C 1.34489 * 108.85362 * 180.02562 * 4 3 2 6 6 C 1.46683 * 106.33559 * 0.02562 * 5 4 3 7 7 C 1.47260 * 126.94151 * 179.97438 * 6 5 4 8 8 O 1.21628 * 120.00034 * 140.63436 * 7 6 5 9 9 N 1.34775 * 120.00321 * 320.63324 * 7 6 5 10 10 C 1.46930 * 120.63045 * 354.37868 * 9 7 6 11 11 C 1.53186 * 108.77864 * 233.58600 * 10 9 7 12 12 C 1.53035 * 109.31313 * 305.36572 * 11 10 9 13 13 C 1.53004 * 109.46291 * 181.38411 * 12 11 10 14 14 H 1.09005 * 109.46701 * 59.96644 * 13 12 11 15 15 C 1.53009 * 109.46848 * 299.97432 * 13 12 11 16 16 N 1.46497 * 109.47415 * 179.97438 * 13 12 11 17 17 C 1.36935 * 120.00129 * 204.99977 * 16 13 12 18 18 H 1.08006 * 120.00055 * 0.02562 * 17 16 13 19 19 C 1.38806 * 120.00185 * 179.97438 * 17 16 13 20 20 N 1.31621 * 120.00021 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00212 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47414 * 60.00138 * 21 19 17 23 23 H 1.48500 * 109.47383 * 179.97438 * 21 19 17 24 24 H 1.48496 * 109.47058 * 300.00022 * 21 19 17 25 25 C 1.53047 * 109.52840 * 61.37097 * 12 11 10 26 26 C 1.46925 * 120.63440 * 174.35959 * 9 7 6 27 27 C 1.34665 * 124.85346 * 85.28682 * 3 2 1 28 28 C 1.50697 * 125.79898 * 0.02562 * 27 3 2 29 29 H 1.08997 * 109.47208 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47621 * 299.99999 * 1 2 3 31 31 H 1.09001 * 109.47302 * 59.99901 * 1 2 3 32 32 H 1.08998 * 109.47621 * 240.00001 * 2 1 3 33 33 H 1.08996 * 109.47172 * 119.99620 * 2 1 3 34 34 H 1.07994 * 125.57365 * 0.04022 * 4 3 2 35 35 H 1.08001 * 126.82983 * 179.97438 * 5 4 3 36 36 H 1.09004 * 109.58791 * 113.79755 * 10 9 7 37 37 H 1.09005 * 109.70092 * 353.44643 * 10 9 7 38 38 H 1.08998 * 109.49952 * 185.41143 * 11 10 9 39 39 H 1.09002 * 109.52443 * 65.33271 * 11 10 9 40 40 H 1.08997 * 109.45954 * 301.35803 * 12 11 10 41 41 H 1.08997 * 109.46536 * 299.99316 * 15 13 12 42 42 H 1.09003 * 109.46422 * 180.02562 * 15 13 12 43 43 H 1.08993 * 109.47026 * 60.00017 * 15 13 12 44 44 H 0.96996 * 119.99859 * 25.00187 * 16 13 12 45 45 H 0.96999 * 119.99980 * 179.97438 * 20 19 17 46 46 H 1.08996 * 109.49588 * 58.57863 * 25 12 11 47 47 H 1.08998 * 109.49578 * 178.67872 * 25 12 11 48 48 H 1.09000 * 109.58297 * 246.20137 * 26 9 7 49 49 H 1.09002 * 109.58494 * 6.48077 * 26 9 7 50 50 H 1.08996 * 109.47352 * 270.15620 * 28 27 3 51 51 H 1.09001 * 109.47352 * 30.16413 * 28 27 3 52 52 H 1.08998 * 109.46814 * 150.16167 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.3706 2.0837 -1.1155 5 6 2.7714 3.3132 -0.7463 6 6 2.6541 3.3639 0.7150 7 6 2.9770 4.5037 1.5898 8 8 2.2672 4.7579 2.5442 9 7 4.0589 5.2651 1.3328 10 6 4.9937 4.8999 0.2597 11 6 6.4103 4.8385 0.8394 12 6 6.7329 6.1660 1.5290 13 6 8.1598 6.1210 2.0793 14 1 8.8601 5.9568 1.2603 15 6 8.2808 4.9789 3.0903 16 7 8.4692 7.3920 2.7391 17 6 9.7695 7.8056 2.8529 18 1 10.5672 7.1951 2.4559 19 6 10.0626 9.0101 3.4775 20 7 9.0905 9.7548 3.9599 21 14 11.8364 9.5747 3.6322 22 1 12.4299 9.7190 2.2785 23 1 11.8802 10.8831 4.3331 24 1 12.6095 8.5713 4.4072 25 6 5.7500 6.3971 2.6791 26 6 4.3259 6.4765 2.1202 27 6 2.1891 2.1371 1.1013 28 6 1.9131 1.7051 2.5184 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 2.3334 1.7130 -2.1291 35 1 3.1126 4.1053 -1.3963 36 1 4.9543 5.6499 -0.5303 37 1 4.7230 3.9257 -0.1476 38 1 7.1251 4.6630 0.0354 39 1 6.4723 4.0272 1.5647 40 1 6.6469 6.9796 0.8088 41 1 7.5805 5.1431 3.9093 42 1 9.2972 4.9472 3.4827 43 1 8.0507 4.0334 2.5995 44 1 7.7528 7.9404 3.0953 45 1 9.2953 10.5963 4.3967 46 1 5.8177 5.5711 3.3870 47 1 5.9948 7.3312 3.1847 48 1 4.2321 7.3551 1.4820 49 1 3.6121 6.5433 2.9413 50 1 0.8800 1.9395 2.7750 51 1 2.0754 0.6311 2.6091 52 1 2.5843 2.2325 3.1962 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714816636.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:23 Heat of formation + Delta-G solvation = 17.055164 kcal Electronic energy + Delta-G solvation = -29515.601852 eV Core-core repulsion = 25708.865353 eV Total energy + Delta-G solvation = -3806.736499 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.65261 -39.68509 -37.72080 -35.25995 -34.44534 -32.77049 -31.84036 -31.09484 -30.60597 -29.40234 -28.10331 -26.64773 -25.24247 -24.20314 -23.76549 -22.84994 -22.07138 -20.93843 -20.03422 -18.76942 -18.13053 -17.40592 -17.06233 -16.15718 -15.86756 -15.44753 -14.91719 -14.79283 -14.70443 -14.27907 -13.92029 -13.76805 -13.66168 -13.52296 -13.33079 -13.20792 -12.99287 -12.76297 -12.68748 -12.60624 -12.39925 -12.21840 -12.05078 -11.77088 -11.76115 -11.68975 -11.39511 -11.16409 -10.98127 -10.78103 -10.48740 -10.28610 -10.17941 -10.00828 -9.69909 -9.56459 -9.44861 -8.83956 -8.70536 -8.42844 -8.21836 -6.88175 -5.70390 -2.98055 1.77975 2.28844 2.52849 3.21553 3.47337 3.48187 3.51800 3.52797 4.19016 4.45132 4.50941 4.63774 4.65363 4.72150 4.88034 5.02663 5.07247 5.08757 5.14996 5.22701 5.29157 5.38162 5.42305 5.46650 5.53312 5.57950 5.63485 5.70012 5.74701 5.78311 5.81836 5.91547 5.97249 6.03438 6.07510 6.12863 6.29956 6.34515 6.40683 6.43845 6.60849 6.62657 6.71988 6.81240 6.87967 6.94551 7.02757 7.05154 7.25058 7.68109 7.75384 8.45346 8.49196 9.59793 10.19660 10.54081 11.52472 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.028024 B = 0.002295 C = 0.002252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.912024 B =12196.653700 C =12428.371363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.096 3.904 3 N -0.442 5.442 4 C -0.017 4.017 5 C -0.167 4.167 6 C -0.225 4.225 7 C 0.591 3.409 8 O -0.553 6.553 9 N -0.601 5.601 10 C 0.104 3.896 11 C -0.128 4.128 12 C -0.090 4.090 13 C 0.178 3.822 14 H 0.044 0.956 15 C -0.166 4.166 16 N -0.724 5.724 17 C -0.235 4.235 18 H 0.068 0.932 19 C -0.016 4.016 20 N -0.934 5.934 21 Si 0.905 3.095 22 H -0.287 1.287 23 H -0.292 1.292 24 H -0.287 1.287 25 C -0.125 4.125 26 C 0.112 3.888 27 C 0.093 3.907 28 C -0.087 4.087 29 H 0.074 0.926 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.092 0.908 33 H 0.089 0.911 34 H 0.165 0.835 35 H 0.146 0.854 36 H 0.063 0.937 37 H 0.093 0.907 38 H 0.071 0.929 39 H 0.068 0.932 40 H 0.070 0.930 41 H 0.048 0.952 42 H 0.048 0.952 43 H 0.036 0.964 44 H 0.384 0.616 45 H 0.255 0.745 46 H 0.066 0.934 47 H 0.083 0.917 48 H 0.064 0.936 49 H 0.088 0.912 50 H 0.078 0.922 51 H 0.062 0.938 52 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.377 -21.568 -11.477 29.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.025 4.025 3 N -0.119 5.119 4 C -0.144 4.144 5 C -0.191 4.191 6 C -0.234 4.234 7 C 0.381 3.619 8 O -0.433 6.433 9 N -0.334 5.334 10 C -0.019 4.019 11 C -0.167 4.167 12 C -0.109 4.109 13 C 0.068 3.932 14 H 0.062 0.938 15 C -0.226 4.226 16 N -0.367 5.367 17 C -0.366 4.366 18 H 0.086 0.914 19 C -0.212 4.212 20 N -0.583 5.583 21 Si 0.737 3.263 22 H -0.214 1.214 23 H -0.218 1.218 24 H -0.214 1.214 25 C -0.164 4.164 26 C -0.010 4.010 27 C -0.023 4.023 28 C -0.144 4.144 29 H 0.093 0.907 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.110 0.890 33 H 0.107 0.893 34 H 0.182 0.818 35 H 0.164 0.836 36 H 0.081 0.919 37 H 0.112 0.888 38 H 0.090 0.910 39 H 0.086 0.914 40 H 0.088 0.912 41 H 0.067 0.933 42 H 0.067 0.933 43 H 0.055 0.945 44 H 0.219 0.781 45 H 0.064 0.936 46 H 0.085 0.915 47 H 0.102 0.898 48 H 0.083 0.917 49 H 0.107 0.893 50 H 0.097 0.903 51 H 0.081 0.919 52 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -17.676 -21.709 -11.004 30.080 hybrid contribution 0.930 0.580 0.052 1.097 sum -16.746 -21.128 -10.952 29.100 Atomic orbital electron populations 1.22170 0.94239 1.03005 1.03435 1.21868 0.95656 0.80553 1.04438 1.43666 1.50627 1.11892 1.05761 1.21657 1.08184 0.93325 0.91195 1.22012 1.06838 0.97113 0.93111 1.20102 1.14689 0.94895 0.93756 1.17442 0.79980 0.81195 0.83306 1.90742 1.50800 1.71450 1.30284 1.47930 1.24166 1.26018 1.35246 1.21965 0.89094 1.01591 0.89202 1.22009 0.95346 0.98818 1.00503 1.21386 0.96073 0.96480 0.96953 1.20191 0.92287 0.87275 0.93408 0.93777 1.22528 1.01411 0.98134 1.00554 1.42494 1.05848 1.19606 1.68721 1.19199 0.84711 1.02021 1.30685 0.91398 1.24719 0.97195 0.97634 1.01604 1.69644 1.30196 1.14217 1.44236 0.86293 0.84815 0.77702 0.77523 1.21393 1.21783 1.21413 1.21950 0.92806 1.03342 0.98258 1.21673 0.97866 0.85669 0.95795 1.20154 1.01842 0.90968 0.89296 1.20405 1.03548 1.00770 0.89679 0.90696 0.91676 0.91770 0.88980 0.89259 0.81783 0.83634 0.91898 0.88845 0.91031 0.91361 0.91180 0.93315 0.93275 0.94494 0.78142 0.93553 0.91549 0.89846 0.91737 0.89337 0.90326 0.91902 0.89612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.73 10.24 37.15 0.38 -0.35 16 2 C 0.10 0.46 6.46 -4.04 -0.03 0.43 16 3 N -0.44 -3.68 2.69 -112.53 -0.30 -3.98 16 4 C -0.02 -0.14 11.33 -16.82 -0.19 -0.33 16 5 C -0.17 -1.70 8.69 -37.50 -0.33 -2.03 16 6 C -0.22 -2.89 5.32 -103.35 -0.55 -3.44 16 7 C 0.59 9.17 7.31 -12.59 -0.09 9.08 16 8 O -0.55 -10.23 15.79 5.25 0.08 -10.15 16 9 N -0.60 -8.63 2.97 -174.10 -0.52 -9.14 16 10 C 0.10 1.25 5.54 -3.71 -0.02 1.23 16 11 C -0.13 -1.69 4.97 -26.62 -0.13 -1.82 16 12 C -0.09 -1.46 2.14 -90.58 -0.19 -1.65 16 13 C 0.18 3.52 2.72 -67.93 -0.18 3.34 16 14 H 0.04 0.90 8.08 -51.93 -0.42 0.48 16 15 C -0.17 -3.08 8.79 37.16 0.33 -2.75 16 16 N -0.72 -18.08 5.04 -53.42 -0.27 -18.35 16 17 C -0.23 -6.55 9.93 -15.06 -0.15 -6.70 16 18 H 0.07 1.84 7.83 -52.48 -0.41 1.43 16 19 C -0.02 -0.46 5.50 -17.43 -0.10 -0.55 16 20 N -0.93 -28.41 13.06 55.49 0.72 -27.68 16 21 Si 0.91 22.65 29.55 -169.99 -5.02 17.63 16 22 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 23 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 24 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 25 C -0.13 -2.08 4.81 -26.61 -0.13 -2.20 16 26 C 0.11 1.71 6.44 -3.71 -0.02 1.69 16 27 C 0.09 1.02 6.89 -81.88 -0.56 0.46 16 28 C -0.09 -0.83 9.51 36.00 0.34 -0.48 16 29 H 0.07 0.19 8.14 -51.93 -0.42 -0.23 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.09 0.28 8.11 -51.93 -0.42 -0.15 16 33 H 0.09 0.35 7.04 -51.93 -0.37 -0.01 16 34 H 0.16 0.84 8.06 -52.49 -0.42 0.42 16 35 H 0.15 1.31 7.46 -52.49 -0.39 0.91 16 36 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.09 1.02 4.75 -51.93 -0.25 0.77 16 38 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 39 H 0.07 0.94 6.51 -51.93 -0.34 0.60 16 40 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 41 H 0.05 0.92 6.46 -51.93 -0.34 0.59 16 42 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 43 H 0.04 0.58 6.46 -51.93 -0.34 0.24 16 44 H 0.38 10.10 6.04 -40.82 -0.25 9.85 16 45 H 0.25 7.54 8.31 -40.82 -0.34 7.20 16 46 H 0.07 1.14 6.51 -51.93 -0.34 0.80 16 47 H 0.08 1.56 6.46 -51.93 -0.34 1.22 16 48 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 49 H 0.09 1.44 6.99 -51.93 -0.36 1.08 16 50 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 51 H 0.06 0.43 7.02 -51.93 -0.36 0.06 16 52 H 0.09 0.98 7.66 -51.93 -0.40 0.58 16 LS Contribution 400.03 15.07 6.03 6.03 Total: -1.00 -33.95 400.03 -9.58 -43.52 By element: Atomic # 1 Polarization: 16.90 SS G_CDS: -8.67 Total: 8.23 kcal Atomic # 6 Polarization: -4.47 SS G_CDS: -1.63 Total: -6.10 kcal Atomic # 7 Polarization: -58.80 SS G_CDS: -0.36 Total: -59.16 kcal Atomic # 8 Polarization: -10.23 SS G_CDS: 0.08 Total: -10.15 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -5.02 Total: 17.63 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -33.95 -9.58 -43.52 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714816636.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.580 kcal (2) G-P(sol) polarization free energy of solvation -33.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.525 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds