Wall clock time and date at job start Tue Mar 31 2020 17:57:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46501 * 109.46935 * 2 1 4 4 C 1.36451 * 124.84914 * 264.97477 * 3 2 1 5 5 C 1.34489 * 108.85362 * 180.02562 * 4 3 2 6 6 C 1.46683 * 106.33559 * 0.02562 * 5 4 3 7 7 C 1.47260 * 126.94151 * 179.97438 * 6 5 4 8 8 O 1.21628 * 120.00034 * 140.63436 * 7 6 5 9 9 N 1.34775 * 120.00321 * 320.63324 * 7 6 5 10 10 C 1.46930 * 120.63045 * 354.37868 * 9 7 6 11 11 C 1.53186 * 108.77864 * 233.58600 * 10 9 7 12 12 C 1.53035 * 109.31313 * 305.36572 * 11 10 9 13 13 C 1.53004 * 109.46291 * 181.38411 * 12 11 10 14 14 H 1.09005 * 109.46701 * 59.96644 * 13 12 11 15 15 C 1.53009 * 109.46848 * 299.97432 * 13 12 11 16 16 N 1.46497 * 109.47415 * 179.97438 * 13 12 11 17 17 C 1.36935 * 120.00129 * 204.99977 * 16 13 12 18 18 H 1.08006 * 120.00055 * 0.02562 * 17 16 13 19 19 C 1.38806 * 120.00185 * 179.97438 * 17 16 13 20 20 N 1.31621 * 120.00021 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00212 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47414 * 60.00138 * 21 19 17 23 23 H 1.48500 * 109.47383 * 179.97438 * 21 19 17 24 24 H 1.48496 * 109.47058 * 300.00022 * 21 19 17 25 25 C 1.53047 * 109.52840 * 61.37097 * 12 11 10 26 26 C 1.46925 * 120.63440 * 174.35959 * 9 7 6 27 27 C 1.34665 * 124.85346 * 85.28682 * 3 2 1 28 28 C 1.50697 * 125.79898 * 0.02562 * 27 3 2 29 29 H 1.08997 * 109.47208 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47621 * 299.99999 * 1 2 3 31 31 H 1.09001 * 109.47302 * 59.99901 * 1 2 3 32 32 H 1.08998 * 109.47621 * 240.00001 * 2 1 3 33 33 H 1.08996 * 109.47172 * 119.99620 * 2 1 3 34 34 H 1.07994 * 125.57365 * 0.04022 * 4 3 2 35 35 H 1.08001 * 126.82983 * 179.97438 * 5 4 3 36 36 H 1.09004 * 109.58791 * 113.79755 * 10 9 7 37 37 H 1.09005 * 109.70092 * 353.44643 * 10 9 7 38 38 H 1.08998 * 109.49952 * 185.41143 * 11 10 9 39 39 H 1.09002 * 109.52443 * 65.33271 * 11 10 9 40 40 H 1.08997 * 109.45954 * 301.35803 * 12 11 10 41 41 H 1.08997 * 109.46536 * 299.99316 * 15 13 12 42 42 H 1.09003 * 109.46422 * 180.02562 * 15 13 12 43 43 H 1.08993 * 109.47026 * 60.00017 * 15 13 12 44 44 H 0.96996 * 119.99859 * 25.00187 * 16 13 12 45 45 H 0.96999 * 119.99980 * 179.97438 * 20 19 17 46 46 H 1.08996 * 109.49588 * 58.57863 * 25 12 11 47 47 H 1.08998 * 109.49578 * 178.67872 * 25 12 11 48 48 H 1.09000 * 109.58297 * 246.20137 * 26 9 7 49 49 H 1.09002 * 109.58494 * 6.48077 * 26 9 7 50 50 H 1.08996 * 109.47352 * 270.15620 * 28 27 3 51 51 H 1.09001 * 109.47352 * 30.16413 * 28 27 3 52 52 H 1.08998 * 109.46814 * 150.16167 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.3706 2.0837 -1.1155 5 6 2.7714 3.3132 -0.7463 6 6 2.6541 3.3639 0.7150 7 6 2.9770 4.5037 1.5898 8 8 2.2672 4.7579 2.5442 9 7 4.0589 5.2651 1.3328 10 6 4.9937 4.8999 0.2597 11 6 6.4103 4.8385 0.8394 12 6 6.7329 6.1660 1.5290 13 6 8.1598 6.1210 2.0793 14 1 8.8601 5.9568 1.2603 15 6 8.2808 4.9789 3.0903 16 7 8.4692 7.3920 2.7391 17 6 9.7695 7.8056 2.8529 18 1 10.5672 7.1951 2.4559 19 6 10.0626 9.0101 3.4775 20 7 9.0905 9.7548 3.9599 21 14 11.8364 9.5747 3.6322 22 1 12.4299 9.7190 2.2785 23 1 11.8802 10.8831 4.3331 24 1 12.6095 8.5713 4.4072 25 6 5.7500 6.3971 2.6791 26 6 4.3259 6.4765 2.1202 27 6 2.1891 2.1371 1.1013 28 6 1.9131 1.7051 2.5184 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 2.3334 1.7130 -2.1291 35 1 3.1126 4.1053 -1.3963 36 1 4.9543 5.6499 -0.5303 37 1 4.7230 3.9257 -0.1476 38 1 7.1251 4.6630 0.0354 39 1 6.4723 4.0272 1.5647 40 1 6.6469 6.9796 0.8088 41 1 7.5805 5.1431 3.9093 42 1 9.2972 4.9472 3.4827 43 1 8.0507 4.0334 2.5995 44 1 7.7528 7.9404 3.0953 45 1 9.2953 10.5963 4.3967 46 1 5.8177 5.5711 3.3870 47 1 5.9948 7.3312 3.1847 48 1 4.2321 7.3551 1.4820 49 1 3.6121 6.5433 2.9413 50 1 0.8800 1.9395 2.7750 51 1 2.0754 0.6311 2.6091 52 1 2.5843 2.2325 3.1962 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714816636.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:22 Heat of formation + Delta-G solvation = -2.461802 kcal Electronic energy + Delta-G solvation = -29516.448171 eV Core-core repulsion = 25708.865353 eV Total energy + Delta-G solvation = -3807.582818 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -42.38569 -40.84730 -39.08181 -36.79045 -35.04227 -34.52533 -32.58420 -32.34294 -32.17111 -30.16288 -29.75826 -27.52076 -26.56061 -25.57752 -24.94515 -23.86632 -23.23483 -22.04091 -20.96605 -19.97424 -19.30728 -19.05354 -18.12266 -17.23918 -16.74626 -16.63075 -16.33570 -16.01241 -15.62358 -15.46471 -15.37700 -15.22015 -14.79556 -14.40093 -14.31733 -14.16835 -14.13610 -13.85310 -13.69125 -13.60151 -13.54071 -13.14630 -12.94769 -12.91719 -12.80689 -12.77268 -12.65515 -12.57642 -12.42845 -12.18027 -12.07206 -11.97658 -11.72601 -11.56877 -11.26897 -11.07379 -10.85647 -10.80201 -9.63649 -9.37561 -9.03233 -8.95186 -7.90066 -5.17255 0.89476 1.47444 1.50396 1.56335 1.57397 1.86643 2.20181 2.43677 2.58900 3.42778 3.72284 3.82775 3.83432 3.87720 3.94401 4.03649 4.09224 4.15582 4.17795 4.29752 4.36775 4.39727 4.45132 4.48874 4.59577 4.61972 4.65801 4.68414 4.75940 4.84387 4.87194 4.88575 4.92815 4.96235 5.00383 5.08088 5.09457 5.12866 5.14170 5.23615 5.25805 5.26322 5.36264 5.46545 5.56273 5.68825 5.72919 5.86056 6.19038 6.32764 6.43970 6.58402 7.30131 7.38482 8.18122 8.40251 9.33441 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.028024 B = 0.002295 C = 0.002252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.912024 B =12196.653700 C =12428.371363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.089 3.911 3 N -0.436 5.436 4 C -0.002 4.002 5 C -0.183 4.183 6 C -0.260 4.260 7 C 0.585 3.415 8 O -0.597 6.597 9 N -0.601 5.601 10 C 0.108 3.892 11 C -0.119 4.119 12 C -0.079 4.079 13 C 0.172 3.828 14 H 0.045 0.955 15 C -0.156 4.156 16 N -0.737 5.737 17 C -0.234 4.234 18 H 0.074 0.926 19 C -0.081 4.081 20 N -0.971 5.971 21 Si 0.971 3.029 22 H -0.277 1.277 23 H -0.298 1.298 24 H -0.281 1.281 25 C -0.115 4.115 26 C 0.118 3.882 27 C 0.085 3.915 28 C -0.084 4.084 29 H 0.096 0.904 30 H 0.047 0.953 31 H 0.058 0.942 32 H 0.119 0.881 33 H 0.099 0.901 34 H 0.202 0.798 35 H 0.156 0.844 36 H 0.078 0.922 37 H 0.113 0.887 38 H 0.094 0.906 39 H 0.065 0.935 40 H 0.063 0.937 41 H 0.037 0.963 42 H 0.030 0.970 43 H 0.070 0.930 44 H 0.373 0.627 45 H 0.249 0.751 46 H 0.057 0.943 47 H 0.055 0.945 48 H 0.072 0.928 49 H 0.072 0.928 50 H 0.075 0.925 51 H 0.091 0.909 52 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.269 -24.673 -14.238 33.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.030 4.030 3 N -0.112 5.112 4 C -0.128 4.128 5 C -0.207 4.207 6 C -0.270 4.270 7 C 0.377 3.623 8 O -0.480 6.480 9 N -0.333 5.333 10 C -0.014 4.014 11 C -0.158 4.158 12 C -0.098 4.098 13 C 0.064 3.936 14 H 0.064 0.936 15 C -0.215 4.215 16 N -0.378 5.378 17 C -0.366 4.366 18 H 0.092 0.908 19 C -0.272 4.272 20 N -0.623 5.623 21 Si 0.800 3.200 22 H -0.203 1.203 23 H -0.225 1.225 24 H -0.207 1.207 25 C -0.153 4.153 26 C -0.004 4.004 27 C -0.032 4.032 28 C -0.141 4.141 29 H 0.114 0.886 30 H 0.066 0.934 31 H 0.077 0.923 32 H 0.137 0.863 33 H 0.117 0.883 34 H 0.219 0.781 35 H 0.173 0.827 36 H 0.096 0.904 37 H 0.131 0.869 38 H 0.113 0.887 39 H 0.084 0.916 40 H 0.082 0.918 41 H 0.056 0.944 42 H 0.049 0.951 43 H 0.089 0.911 44 H 0.206 0.794 45 H 0.058 0.942 46 H 0.076 0.924 47 H 0.074 0.926 48 H 0.090 0.910 49 H 0.090 0.910 50 H 0.094 0.906 51 H 0.110 0.890 52 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -17.552 -24.884 -13.817 33.440 hybrid contribution 0.825 1.425 0.871 1.863 sum -16.727 -23.460 -12.946 31.587 Atomic orbital electron populations 1.22147 0.93970 1.04065 1.02323 1.22210 0.95818 0.78689 1.06327 1.43947 1.49367 1.12943 1.04946 1.22225 1.05699 0.92447 0.92463 1.22167 1.08243 0.98551 0.91743 1.20079 1.17283 0.94737 0.94916 1.17975 0.79561 0.81694 0.83087 1.90704 1.52225 1.72699 1.32340 1.48003 1.24465 1.25360 1.35435 1.22110 0.87540 1.03149 0.88588 1.21958 0.96724 0.96265 1.00829 1.21254 0.93637 0.98422 0.96511 1.20444 0.94354 0.85462 0.93317 0.93648 1.22377 0.99965 0.99195 0.99993 1.42731 1.04710 1.21291 1.69101 1.19596 0.86064 1.01748 1.29195 0.90798 1.25527 1.01087 0.98236 1.02388 1.69814 1.32127 1.14496 1.45813 0.85249 0.80284 0.76780 0.77688 1.20339 1.22469 1.20687 1.21787 0.93880 1.01457 0.98187 1.21475 0.96395 0.86818 0.95747 1.20276 1.01514 0.91046 0.90407 1.20360 1.02649 1.02243 0.88836 0.88569 0.93366 0.92291 0.86288 0.88252 0.78121 0.82692 0.90410 0.86933 0.88744 0.91618 0.91814 0.94403 0.95078 0.91082 0.79385 0.94248 0.92437 0.92637 0.90992 0.90974 0.90627 0.89002 0.92147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.96 10.24 71.98 0.74 -0.22 16 2 C 0.09 0.52 6.46 86.38 0.56 1.07 16 3 N -0.44 -5.95 2.69 -509.93 -1.37 -7.32 16 4 C 0.00 -0.02 11.33 83.12 0.94 0.92 16 5 C -0.18 -3.31 8.69 23.62 0.21 -3.11 16 6 C -0.26 -6.48 5.32 -19.04 -0.10 -6.58 16 7 C 0.59 18.49 7.31 86.62 0.63 19.12 16 8 O -0.60 -23.25 15.79 -4.12 -0.07 -23.31 16 9 N -0.60 -17.21 2.97 -822.96 -2.45 -19.65 16 10 C 0.11 2.38 5.54 86.36 0.48 2.86 16 11 C -0.12 -2.89 4.97 30.67 0.15 -2.73 16 12 C -0.08 -2.54 2.14 -10.76 -0.02 -2.56 16 13 C 0.17 6.74 2.72 45.00 0.12 6.87 16 14 H 0.05 1.78 8.08 -2.38 -0.02 1.76 16 15 C -0.16 -5.67 8.79 71.99 0.63 -5.04 16 16 N -0.74 -37.49 5.04 -322.92 -1.63 -39.12 16 17 C -0.23 -13.14 9.93 84.03 0.83 -12.31 16 18 H 0.07 3.98 7.83 -2.91 -0.02 3.96 16 19 C -0.08 -4.71 5.50 84.86 0.47 -4.24 16 20 N -0.97 -60.68 13.06 21.65 0.28 -60.40 16 21 Si 0.97 47.05 29.55 68.60 2.03 49.07 16 22 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 23 H -0.30 -14.65 7.11 99.48 0.71 -13.94 16 24 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 25 C -0.11 -3.94 4.81 30.67 0.15 -3.79 16 26 C 0.12 3.75 6.44 86.36 0.56 4.31 16 27 C 0.09 1.76 6.89 41.78 0.29 2.04 16 28 C -0.08 -1.57 9.51 71.24 0.68 -0.89 16 29 H 0.10 0.16 8.14 -2.39 -0.02 0.14 16 30 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 31 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 32 H 0.12 0.11 8.11 -2.39 -0.02 0.09 16 33 H 0.10 0.41 7.04 -2.39 -0.02 0.39 16 34 H 0.20 1.00 8.06 -2.91 -0.02 0.97 16 35 H 0.16 2.37 7.46 -2.91 -0.02 2.34 16 36 H 0.08 1.53 8.14 -2.38 -0.02 1.51 16 37 H 0.11 2.14 4.75 -2.38 -0.01 2.13 16 38 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 39 H 0.07 1.65 6.51 -2.39 -0.02 1.64 16 40 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 41 H 0.04 1.44 6.46 -2.39 -0.02 1.43 16 42 H 0.03 1.21 8.14 -2.39 -0.02 1.20 16 43 H 0.07 2.09 6.46 -2.39 -0.02 2.07 16 44 H 0.37 20.41 6.04 -92.71 -0.56 19.85 16 45 H 0.25 15.17 8.31 -92.71 -0.77 14.40 16 46 H 0.06 2.05 6.51 -2.39 -0.02 2.04 16 47 H 0.06 2.21 6.46 -2.39 -0.02 2.20 16 48 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 49 H 0.07 2.52 6.99 -2.39 -0.02 2.51 16 50 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 51 H 0.09 1.10 7.02 -2.39 -0.02 1.08 16 52 H 0.06 1.44 7.66 -2.39 -0.02 1.42 16 Total: -1.00 -76.48 400.03 4.46 -72.02 By element: Atomic # 1 Polarization: 32.63 SS G_CDS: 0.35 Total: 32.98 kcal Atomic # 6 Polarization: -11.58 SS G_CDS: 7.31 Total: -4.27 kcal Atomic # 7 Polarization: -121.33 SS G_CDS: -5.16 Total: -126.49 kcal Atomic # 8 Polarization: -23.25 SS G_CDS: -0.07 Total: -23.31 kcal Atomic # 14 Polarization: 47.05 SS G_CDS: 2.03 Total: 49.07 kcal Total: -76.48 4.46 -72.02 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714816636.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.558 kcal (2) G-P(sol) polarization free energy of solvation -76.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds