Wall clock time and date at job start Tue Mar 31 2020 18:14:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46502 * 109.46704 * 2 1 4 4 C 1.46496 * 120.00026 * 270.00244 * 3 2 1 5 5 C 1.53011 * 109.47064 * 269.99966 * 4 3 2 6 6 C 1.39044 * 119.99619 * 90.00758 * 3 2 1 7 7 C 1.39229 * 119.92949 * 179.97438 * 6 3 2 8 8 C 1.37604 * 120.07110 * 180.02562 * 7 6 3 9 9 C 1.39793 * 119.92872 * 0.24983 * 8 7 6 10 10 C 1.47521 * 120.06876 * 179.72718 * 9 8 7 11 11 O 1.21602 * 119.99784 * 140.57345 * 10 9 8 12 12 N 1.34769 * 120.00097 * 320.56964 * 10 9 8 13 13 C 1.46499 * 120.00020 * 4.87780 * 12 10 9 14 14 C 1.46503 * 120.00009 * 184.86732 * 12 10 9 15 15 H 1.08997 * 109.47284 * 0.02562 * 14 12 10 16 16 C 1.53003 * 109.46763 * 120.00752 * 14 12 10 17 17 C 1.53000 * 109.47549 * 240.00175 * 14 12 10 18 18 N 1.46504 * 109.46577 * 55.00170 * 17 14 12 19 19 C 1.36936 * 119.99662 * 180.02562 * 18 17 14 20 20 H 1.08004 * 120.00274 * 359.97438 * 19 18 17 21 21 C 1.38811 * 120.00214 * 180.02562 * 19 18 17 22 22 N 1.31614 * 119.99569 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00108 * 180.02562 * 21 19 18 24 24 H 1.48490 * 109.47159 * 0.02562 * 23 21 19 25 25 H 1.48494 * 109.46940 * 120.00374 * 23 21 19 26 26 H 1.48502 * 109.46964 * 239.99633 * 23 21 19 27 27 C 1.39798 * 119.86552 * 359.52036 * 9 8 7 28 28 C 1.37606 * 119.92821 * 0.45823 * 27 9 8 29 29 H 1.09007 * 109.46536 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47035 * 299.99116 * 1 2 3 31 31 H 1.08991 * 109.47235 * 59.99814 * 1 2 3 32 32 H 1.08994 * 109.46856 * 240.00575 * 2 1 3 33 33 H 1.08999 * 109.47472 * 120.00383 * 2 1 3 34 34 H 1.08994 * 109.47513 * 30.00350 * 4 3 2 35 35 H 1.09001 * 109.47332 * 150.00392 * 4 3 2 36 36 H 1.08998 * 109.46767 * 180.02562 * 5 4 3 37 37 H 1.08994 * 109.47269 * 300.00533 * 5 4 3 38 38 H 1.09001 * 109.46699 * 60.00037 * 5 4 3 39 39 H 1.08002 * 119.95905 * 0.03638 * 7 6 3 40 40 H 1.07996 * 120.03705 * 179.97438 * 8 7 6 41 41 H 1.08993 * 109.47720 * 85.72862 * 13 12 10 42 42 H 1.09000 * 109.47209 * 205.73216 * 13 12 10 43 43 H 1.08997 * 109.46844 * 325.72667 * 13 12 10 44 44 H 1.08996 * 109.47295 * 180.02562 * 16 14 12 45 45 H 1.09003 * 109.47030 * 299.99974 * 16 14 12 46 46 H 1.08997 * 109.47675 * 59.99841 * 16 14 12 47 47 H 1.08991 * 109.47141 * 175.00147 * 17 14 12 48 48 H 1.09005 * 109.47046 * 295.00873 * 17 14 12 49 49 H 0.96993 * 120.00337 * 0.02562 * 18 17 14 50 50 H 0.97007 * 119.99823 * 179.97438 * 22 21 19 51 51 H 1.07999 * 120.04056 * 180.23046 * 27 9 8 52 52 H 1.08004 * 119.97056 * 179.76978 * 28 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.2623 2.0719 -1.2687 5 6 3.7074 1.8316 -1.7104 6 6 2.2501 2.0366 1.2042 7 6 2.7146 3.3491 1.2026 8 6 2.9455 4.0003 2.3926 9 6 2.7181 3.3408 3.6041 10 6 2.9704 4.0339 4.8816 11 8 2.2105 3.8782 5.8182 12 7 4.0430 4.8396 5.0109 13 6 4.8983 5.1118 3.8531 14 6 4.3534 5.4434 6.3091 15 1 3.6120 5.1279 7.0431 16 6 5.7434 4.9919 6.7621 17 6 4.3289 6.9679 6.1816 18 7 3.0376 7.3913 5.6342 19 6 2.7836 8.7213 5.4298 20 1 3.5351 9.4581 5.6724 21 6 1.5600 9.1226 4.9117 22 7 0.6436 8.2249 4.6175 23 14 1.2138 10.9369 4.6321 24 1 2.3976 11.7352 5.0398 25 1 0.9313 11.1708 3.1932 26 1 0.0374 11.3467 5.4404 27 6 2.2471 2.0246 3.6024 28 6 2.0177 1.3790 2.4091 29 1 -0.3633 -1.0278 -0.0005 30 1 -0.3633 0.5137 0.8901 31 1 -0.3633 0.5138 -0.8899 32 1 1.8933 -0.5137 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 1.5815 1.6879 -2.0283 35 1 2.0953 3.1411 -1.1384 36 1 3.8891 2.3458 -2.6542 37 1 4.3882 2.2156 -0.9508 38 1 3.8744 0.7624 -1.8408 39 1 2.8937 3.8567 0.2662 40 1 3.3062 5.0182 2.3907 41 1 4.4859 5.9452 3.2845 42 1 5.9018 5.3662 4.1945 43 1 4.9439 4.2265 3.2189 44 1 5.9742 5.4407 7.7282 45 1 5.7609 3.9058 6.8530 46 1 6.4850 5.3071 6.0282 47 1 4.4718 7.4170 7.1643 48 1 5.1291 7.2897 5.5150 49 1 2.3625 6.7297 5.4167 50 1 -0.2117 8.5053 4.2557 51 1 2.0670 1.5136 4.5367 52 1 1.6574 0.3608 2.4070 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714830014.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:14:42 Heat of formation + Delta-G solvation = 20.962323 kcal Electronic energy + Delta-G solvation = -29625.120378 eV Core-core repulsion = 25818.553306 eV Total energy + Delta-G solvation = -3806.567072 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.23009 -39.13156 -36.75852 -36.01792 -33.92352 -32.78394 -32.14570 -30.84281 -30.50461 -29.85349 -27.99377 -26.63465 -25.53526 -24.25919 -23.86410 -22.52404 -21.94601 -21.33072 -20.08172 -18.93135 -17.57696 -16.97613 -16.88493 -16.23719 -15.85327 -15.13015 -14.90591 -14.67935 -14.46962 -14.17074 -13.94165 -13.72009 -13.56167 -13.50113 -13.21426 -13.05808 -12.82682 -12.70767 -12.41822 -12.29941 -12.26101 -12.18349 -12.02105 -11.99194 -11.80849 -11.62250 -11.41671 -11.29023 -11.21837 -10.80482 -10.70505 -10.56591 -10.33387 -9.95263 -9.82810 -9.61956 -9.24757 -8.80431 -8.79519 -8.09114 -7.29764 -6.80806 -5.64638 -2.94174 1.40181 1.60516 2.91192 3.29776 3.47597 3.50185 3.53334 3.55935 4.09028 4.57604 4.64551 4.66140 4.84673 4.97519 4.99178 5.03082 5.10439 5.15243 5.17554 5.30467 5.34153 5.45242 5.46502 5.49606 5.55253 5.58125 5.62093 5.63826 5.67441 5.69568 5.78964 5.84838 5.90106 5.98480 6.03289 6.14223 6.17014 6.25974 6.27781 6.30258 6.45088 6.48204 6.58191 6.71457 6.84409 6.86720 7.15620 7.16244 7.43997 7.77796 7.92228 8.52428 8.75834 9.63866 10.24203 10.59849 11.57156 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.011194 B = 0.003247 C = 0.002860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2500.685159 B = 8621.314970 C = 9787.125159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.118 3.882 3 N -0.625 5.625 4 C 0.116 3.884 5 C -0.172 4.172 6 C 0.234 3.766 7 C -0.207 4.207 8 C -0.035 4.035 9 C -0.179 4.179 10 C 0.567 3.433 11 O -0.540 6.540 12 N -0.594 5.594 13 C 0.078 3.922 14 C 0.126 3.874 15 H 0.100 0.900 16 C -0.155 4.155 17 C 0.144 3.856 18 N -0.728 5.728 19 C -0.239 4.239 20 H 0.069 0.931 21 C -0.013 4.013 22 N -0.926 5.926 23 Si 0.904 3.096 24 H -0.281 1.281 25 H -0.293 1.293 26 H -0.292 1.292 27 C -0.020 4.020 28 C -0.210 4.210 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.055 0.945 32 H 0.071 0.929 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.079 0.921 36 H 0.063 0.937 37 H 0.061 0.939 38 H 0.054 0.946 39 H 0.125 0.875 40 H 0.138 0.862 41 H 0.064 0.936 42 H 0.067 0.933 43 H 0.069 0.931 44 H 0.066 0.934 45 H 0.054 0.946 46 H 0.057 0.943 47 H 0.026 0.974 48 H 0.019 0.981 49 H 0.388 0.612 50 H 0.253 0.747 51 H 0.126 0.874 52 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.449 -18.663 -12.039 23.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.005 4.005 3 N -0.335 5.335 4 C -0.007 4.007 5 C -0.230 4.230 6 C 0.131 3.869 7 C -0.229 4.229 8 C -0.054 4.054 9 C -0.184 4.184 10 C 0.356 3.644 11 O -0.418 6.418 12 N -0.326 5.326 13 C -0.065 4.065 14 C 0.022 3.978 15 H 0.118 0.882 16 C -0.213 4.213 17 C 0.016 3.984 18 N -0.373 5.373 19 C -0.371 4.371 20 H 0.087 0.913 21 C -0.209 4.209 22 N -0.575 5.575 23 Si 0.735 3.265 24 H -0.207 1.207 25 H -0.220 1.220 26 H -0.219 1.219 27 C -0.039 4.039 28 C -0.232 4.232 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.074 0.926 32 H 0.089 0.911 33 H 0.095 0.905 34 H 0.090 0.910 35 H 0.097 0.903 36 H 0.082 0.918 37 H 0.080 0.920 38 H 0.073 0.927 39 H 0.142 0.858 40 H 0.156 0.844 41 H 0.082 0.918 42 H 0.085 0.915 43 H 0.088 0.912 44 H 0.085 0.915 45 H 0.073 0.927 46 H 0.076 0.924 47 H 0.044 0.956 48 H 0.037 0.963 49 H 0.222 0.778 50 H 0.063 0.937 51 H 0.144 0.856 52 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 8.045 -18.651 -11.715 23.448 hybrid contribution -0.547 0.975 -0.414 1.192 sum 7.498 -17.676 -12.129 22.711 Atomic orbital electron populations 1.22242 0.96323 1.01892 1.02814 1.21386 0.94067 0.82521 1.02511 1.46521 1.70822 1.13120 1.02998 1.21411 0.96217 0.98117 0.84954 1.22225 0.97387 1.01896 1.01525 1.17939 0.91964 0.91333 0.85626 1.20590 1.09824 0.93948 0.98515 1.21475 0.93507 0.99614 0.90829 1.19625 1.09628 0.96085 0.93104 1.18196 0.80226 0.78472 0.87509 1.90767 1.45495 1.64194 1.41352 1.47520 1.27335 1.47274 1.10468 1.22003 0.94702 1.01064 0.88753 1.21368 0.97027 0.94187 0.85170 0.88243 1.22067 0.96664 1.01133 1.01485 1.20997 0.90321 0.90352 0.96756 1.42331 1.12861 1.05519 1.76549 1.19246 0.98605 0.84015 1.35208 0.91327 1.24746 0.96654 0.97259 1.02282 1.69716 1.06328 1.31591 1.49836 0.86167 0.77720 0.85275 0.77336 1.20654 1.22012 1.21945 1.20848 0.92611 0.92828 0.97622 1.20513 1.11126 1.00838 0.90756 0.91891 0.91915 0.92584 0.91071 0.90547 0.91022 0.90308 0.91821 0.92031 0.92730 0.85759 0.84448 0.91797 0.91474 0.91220 0.91463 0.92673 0.92399 0.95616 0.96295 0.77767 0.93672 0.85623 0.85893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.30 10.24 37.16 0.38 -0.92 16 2 C 0.12 0.88 5.86 -4.04 -0.02 0.86 16 3 N -0.62 -5.91 2.59 -171.75 -0.44 -6.36 16 4 C 0.12 0.91 5.86 -4.04 -0.02 0.88 16 5 C -0.17 -1.18 10.24 37.16 0.38 -0.80 16 6 C 0.23 2.85 6.55 -83.86 -0.55 2.30 16 7 C -0.21 -2.70 9.18 -39.44 -0.36 -3.07 16 8 C -0.04 -0.54 7.54 -39.23 -0.30 -0.84 16 9 C -0.18 -3.05 5.23 -104.95 -0.55 -3.60 16 10 C 0.57 11.31 7.04 -12.48 -0.09 11.22 16 11 O -0.54 -12.83 16.25 5.28 0.09 -12.74 16 12 N -0.59 -10.60 2.24 -175.17 -0.39 -11.00 16 13 C 0.08 1.13 8.01 59.85 0.48 1.61 16 14 C 0.13 2.28 2.79 -67.93 -0.19 2.09 16 15 H 0.10 2.06 6.91 -51.93 -0.36 1.70 16 16 C -0.15 -2.09 9.18 37.16 0.34 -1.75 16 17 C 0.14 3.04 5.56 -4.04 -0.02 3.01 16 18 N -0.73 -19.49 5.43 -59.91 -0.33 -19.82 16 19 C -0.24 -6.94 9.99 -15.06 -0.15 -7.09 16 20 H 0.07 1.92 7.83 -52.48 -0.41 1.51 16 21 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 22 N -0.93 -29.41 13.06 55.49 0.72 -28.69 16 23 Si 0.90 23.06 29.55 -169.99 -5.02 18.04 16 24 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 25 H -0.29 -7.46 7.11 56.52 0.40 -7.05 16 26 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 27 C -0.02 -0.29 9.62 -39.23 -0.38 -0.67 16 28 C -0.21 -2.65 9.18 -39.45 -0.36 -3.01 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.07 0.42 8.07 -51.93 -0.42 0.00 16 33 H 0.08 0.55 6.17 -51.93 -0.32 0.23 16 34 H 0.07 0.46 8.07 -51.93 -0.42 0.05 16 35 H 0.08 0.66 6.17 -51.93 -0.32 0.34 16 36 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.12 1.40 6.11 -52.49 -0.32 1.08 16 40 H 0.14 2.17 5.32 -52.49 -0.28 1.89 16 41 H 0.06 1.03 6.90 -51.93 -0.36 0.67 16 42 H 0.07 0.84 6.43 -51.93 -0.33 0.50 16 43 H 0.07 0.88 5.81 -51.93 -0.30 0.58 16 44 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 45 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 46 H 0.06 0.70 6.66 -51.93 -0.35 0.36 16 47 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 48 H 0.02 0.39 7.84 -51.93 -0.41 -0.02 16 49 H 0.39 11.37 7.06 -40.82 -0.29 11.08 16 50 H 0.25 7.77 8.31 -40.82 -0.34 7.43 16 51 H 0.13 1.82 8.05 -52.49 -0.42 1.40 16 52 H 0.12 1.27 6.11 -52.48 -0.32 0.95 16 LS Contribution 409.13 15.07 6.17 6.17 Total: -1.00 -35.45 409.13 -9.29 -44.73 By element: Atomic # 1 Polarization: 18.50 SS G_CDS: -8.57 Total: 9.93 kcal Atomic # 6 Polarization: 1.25 SS G_CDS: -1.51 Total: -0.26 kcal Atomic # 7 Polarization: -65.42 SS G_CDS: -0.44 Total: -65.86 kcal Atomic # 8 Polarization: -12.83 SS G_CDS: 0.09 Total: -12.74 kcal Atomic # 14 Polarization: 23.06 SS G_CDS: -5.02 Total: 18.04 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -35.45 -9.29 -44.73 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714830014.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.695 kcal (2) G-P(sol) polarization free energy of solvation -35.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.733 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds