Wall clock time and date at job start Tue Mar 31 2020 18:14:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46502 * 109.46704 * 2 1 4 4 C 1.46496 * 120.00026 * 270.00244 * 3 2 1 5 5 C 1.53011 * 109.47064 * 269.99966 * 4 3 2 6 6 C 1.39044 * 119.99619 * 90.00758 * 3 2 1 7 7 C 1.39229 * 119.92949 * 179.97438 * 6 3 2 8 8 C 1.37604 * 120.07110 * 180.02562 * 7 6 3 9 9 C 1.39793 * 119.92872 * 0.24983 * 8 7 6 10 10 C 1.47521 * 120.06876 * 179.72718 * 9 8 7 11 11 O 1.21602 * 119.99784 * 140.57345 * 10 9 8 12 12 N 1.34769 * 120.00097 * 320.56964 * 10 9 8 13 13 C 1.46499 * 120.00020 * 4.87780 * 12 10 9 14 14 C 1.46503 * 120.00009 * 184.86732 * 12 10 9 15 15 H 1.08997 * 109.47284 * 0.02562 * 14 12 10 16 16 C 1.53003 * 109.46763 * 120.00752 * 14 12 10 17 17 C 1.53000 * 109.47549 * 240.00175 * 14 12 10 18 18 N 1.46504 * 109.46577 * 55.00170 * 17 14 12 19 19 C 1.36936 * 119.99662 * 180.02562 * 18 17 14 20 20 H 1.08004 * 120.00274 * 359.97438 * 19 18 17 21 21 C 1.38811 * 120.00214 * 180.02562 * 19 18 17 22 22 N 1.31614 * 119.99569 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00108 * 180.02562 * 21 19 18 24 24 H 1.48490 * 109.47159 * 0.02562 * 23 21 19 25 25 H 1.48494 * 109.46940 * 120.00374 * 23 21 19 26 26 H 1.48502 * 109.46964 * 239.99633 * 23 21 19 27 27 C 1.39798 * 119.86552 * 359.52036 * 9 8 7 28 28 C 1.37606 * 119.92821 * 0.45823 * 27 9 8 29 29 H 1.09007 * 109.46536 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47035 * 299.99116 * 1 2 3 31 31 H 1.08991 * 109.47235 * 59.99814 * 1 2 3 32 32 H 1.08994 * 109.46856 * 240.00575 * 2 1 3 33 33 H 1.08999 * 109.47472 * 120.00383 * 2 1 3 34 34 H 1.08994 * 109.47513 * 30.00350 * 4 3 2 35 35 H 1.09001 * 109.47332 * 150.00392 * 4 3 2 36 36 H 1.08998 * 109.46767 * 180.02562 * 5 4 3 37 37 H 1.08994 * 109.47269 * 300.00533 * 5 4 3 38 38 H 1.09001 * 109.46699 * 60.00037 * 5 4 3 39 39 H 1.08002 * 119.95905 * 0.03638 * 7 6 3 40 40 H 1.07996 * 120.03705 * 179.97438 * 8 7 6 41 41 H 1.08993 * 109.47720 * 85.72862 * 13 12 10 42 42 H 1.09000 * 109.47209 * 205.73216 * 13 12 10 43 43 H 1.08997 * 109.46844 * 325.72667 * 13 12 10 44 44 H 1.08996 * 109.47295 * 180.02562 * 16 14 12 45 45 H 1.09003 * 109.47030 * 299.99974 * 16 14 12 46 46 H 1.08997 * 109.47675 * 59.99841 * 16 14 12 47 47 H 1.08991 * 109.47141 * 175.00147 * 17 14 12 48 48 H 1.09005 * 109.47046 * 295.00873 * 17 14 12 49 49 H 0.96993 * 120.00337 * 0.02562 * 18 17 14 50 50 H 0.97007 * 119.99823 * 179.97438 * 22 21 19 51 51 H 1.07999 * 120.04056 * 180.23046 * 27 9 8 52 52 H 1.08004 * 119.97056 * 179.76978 * 28 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.2623 2.0719 -1.2687 5 6 3.7074 1.8316 -1.7104 6 6 2.2501 2.0366 1.2042 7 6 2.7146 3.3491 1.2026 8 6 2.9455 4.0003 2.3926 9 6 2.7181 3.3408 3.6041 10 6 2.9704 4.0339 4.8816 11 8 2.2105 3.8782 5.8182 12 7 4.0430 4.8396 5.0109 13 6 4.8983 5.1118 3.8531 14 6 4.3534 5.4434 6.3091 15 1 3.6120 5.1279 7.0431 16 6 5.7434 4.9919 6.7621 17 6 4.3289 6.9679 6.1816 18 7 3.0376 7.3913 5.6342 19 6 2.7836 8.7213 5.4298 20 1 3.5351 9.4581 5.6724 21 6 1.5600 9.1226 4.9117 22 7 0.6436 8.2249 4.6175 23 14 1.2138 10.9369 4.6321 24 1 2.3976 11.7352 5.0398 25 1 0.9313 11.1708 3.1932 26 1 0.0374 11.3467 5.4404 27 6 2.2471 2.0246 3.6024 28 6 2.0177 1.3790 2.4091 29 1 -0.3633 -1.0278 -0.0005 30 1 -0.3633 0.5137 0.8901 31 1 -0.3633 0.5138 -0.8899 32 1 1.8933 -0.5137 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 1.5815 1.6879 -2.0283 35 1 2.0953 3.1411 -1.1384 36 1 3.8891 2.3458 -2.6542 37 1 4.3882 2.2156 -0.9508 38 1 3.8744 0.7624 -1.8408 39 1 2.8937 3.8567 0.2662 40 1 3.3062 5.0182 2.3907 41 1 4.4859 5.9452 3.2845 42 1 5.9018 5.3662 4.1945 43 1 4.9439 4.2265 3.2189 44 1 5.9742 5.4407 7.7282 45 1 5.7609 3.9058 6.8530 46 1 6.4850 5.3071 6.0282 47 1 4.4718 7.4170 7.1643 48 1 5.1291 7.2897 5.5150 49 1 2.3625 6.7297 5.4167 50 1 -0.2117 8.5053 4.2557 51 1 2.0670 1.5136 4.5367 52 1 1.6574 0.3608 2.4070 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714830014.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:14:41 Heat of formation + Delta-G solvation = -0.374205 kcal Electronic energy + Delta-G solvation = -29626.045599 eV Core-core repulsion = 25818.553306 eV Total energy + Delta-G solvation = -3807.492293 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.48032 -40.26872 -37.96132 -37.40646 -35.83473 -33.78683 -33.39529 -32.22898 -31.67622 -31.22231 -28.88411 -27.91176 -27.36783 -25.06220 -24.92431 -24.35136 -22.95748 -22.52091 -21.12133 -20.35634 -19.10272 -18.61766 -18.07754 -17.36015 -16.98853 -16.68413 -16.39622 -15.88259 -15.54064 -15.38314 -15.21513 -15.06013 -15.00450 -14.56177 -14.38627 -14.09687 -13.96404 -13.91006 -13.70349 -13.56148 -13.43842 -13.24538 -13.16333 -12.97312 -12.84971 -12.79509 -12.72237 -12.60173 -12.49645 -12.09163 -12.07455 -11.84590 -11.78690 -11.70512 -11.49250 -11.01397 -10.88339 -10.64447 -9.90985 -9.54664 -8.99318 -8.22638 -7.91864 -5.22770 0.23113 0.51139 1.44579 1.46917 1.56966 1.90283 2.12167 2.16620 2.55791 2.92219 3.40314 3.65292 3.81494 3.91743 3.94124 4.09172 4.12110 4.21644 4.26668 4.30388 4.33417 4.42608 4.48877 4.49841 4.52551 4.55360 4.56314 4.68152 4.70921 4.80645 4.83916 4.88181 4.90361 4.93113 4.98733 5.01502 5.02778 5.14839 5.16039 5.28270 5.29537 5.33240 5.40474 5.41338 5.48319 5.56987 5.72759 5.81347 6.26899 6.36919 6.49409 6.52791 7.27820 7.33288 8.10243 8.33861 9.31295 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.011194 B = 0.003247 C = 0.002860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2500.685159 B = 8621.314970 C = 9787.125159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.112 3.888 3 N -0.619 5.619 4 C 0.109 3.891 5 C -0.165 4.165 6 C 0.243 3.757 7 C -0.208 4.208 8 C -0.041 4.041 9 C -0.211 4.211 10 C 0.556 3.444 11 O -0.596 6.596 12 N -0.592 5.592 13 C 0.079 3.921 14 C 0.127 3.873 15 H 0.065 0.935 16 C -0.141 4.141 17 C 0.142 3.858 18 N -0.743 5.743 19 C -0.242 4.242 20 H 0.080 0.920 21 C -0.078 4.078 22 N -0.970 5.970 23 Si 0.976 3.024 24 H -0.262 1.262 25 H -0.292 1.292 26 H -0.297 1.297 27 C -0.027 4.027 28 C -0.206 4.206 29 H 0.081 0.919 30 H 0.039 0.961 31 H 0.055 0.945 32 H 0.096 0.904 33 H 0.081 0.919 34 H 0.091 0.909 35 H 0.071 0.929 36 H 0.077 0.923 37 H 0.047 0.953 38 H 0.060 0.940 39 H 0.143 0.857 40 H 0.127 0.873 41 H 0.045 0.955 42 H 0.094 0.906 43 H 0.089 0.911 44 H 0.082 0.918 45 H 0.062 0.938 46 H 0.079 0.921 47 H 0.030 0.970 48 H 0.038 0.962 49 H 0.371 0.629 50 H 0.248 0.752 51 H 0.121 0.879 52 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.242 -19.438 -14.285 26.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.010 4.010 3 N -0.326 5.326 4 C -0.013 4.013 5 C -0.224 4.224 6 C 0.138 3.862 7 C -0.231 4.231 8 C -0.060 4.060 9 C -0.216 4.216 10 C 0.347 3.653 11 O -0.478 6.478 12 N -0.323 5.323 13 C -0.063 4.063 14 C 0.024 3.976 15 H 0.083 0.917 16 C -0.200 4.200 17 C 0.015 3.985 18 N -0.386 5.386 19 C -0.374 4.374 20 H 0.097 0.903 21 C -0.270 4.270 22 N -0.621 5.621 23 Si 0.805 3.195 24 H -0.186 1.186 25 H -0.219 1.219 26 H -0.225 1.225 27 C -0.046 4.046 28 C -0.229 4.229 29 H 0.100 0.900 30 H 0.058 0.942 31 H 0.074 0.926 32 H 0.114 0.886 33 H 0.099 0.901 34 H 0.110 0.890 35 H 0.090 0.910 36 H 0.096 0.904 37 H 0.066 0.934 38 H 0.079 0.921 39 H 0.160 0.840 40 H 0.145 0.855 41 H 0.063 0.937 42 H 0.112 0.888 43 H 0.107 0.893 44 H 0.101 0.899 45 H 0.081 0.919 46 H 0.098 0.902 47 H 0.048 0.952 48 H 0.056 0.944 49 H 0.202 0.798 50 H 0.057 0.943 51 H 0.139 0.861 52 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 9.922 -19.427 -13.994 25.917 hybrid contribution -1.091 1.120 0.184 1.574 sum 8.831 -18.307 -13.810 24.573 Atomic orbital electron populations 1.22204 0.96250 1.02787 1.01642 1.21617 0.94026 0.81352 1.03987 1.46819 1.69356 1.13891 1.02583 1.21612 0.97460 0.97759 0.84490 1.22158 0.96089 1.02413 1.01695 1.18035 0.90448 0.91027 0.86701 1.20736 1.09568 0.94474 0.98277 1.21381 0.94247 0.99210 0.91174 1.19513 1.12810 0.97128 0.92151 1.18808 0.79922 0.78536 0.88005 1.90711 1.47409 1.66308 1.43385 1.47651 1.27119 1.46284 1.11248 1.22132 0.95004 1.01318 0.87816 1.21309 0.99034 0.92323 0.84955 0.91697 1.21974 0.93583 1.01693 1.02707 1.21216 0.88146 0.92434 0.96679 1.42569 1.14509 1.04619 1.76880 1.19701 0.98718 0.85196 1.33779 0.90259 1.25639 0.96649 1.01855 1.02905 1.69919 1.06677 1.33898 1.51595 0.85030 0.77687 0.79918 0.76851 1.18608 1.21891 1.22479 1.20910 0.92810 0.92376 0.98553 1.20701 1.10407 1.01762 0.89992 0.90044 0.94165 0.92622 0.88579 0.90119 0.89033 0.91032 0.90430 0.93425 0.92094 0.83975 0.85548 0.93693 0.88800 0.89294 0.89917 0.91895 0.90241 0.95201 0.94436 0.79758 0.94321 0.86087 0.83471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.13 10.24 71.98 0.74 -1.40 16 2 C 0.11 1.32 5.86 86.38 0.51 1.83 16 3 N -0.62 -10.19 2.59 -697.30 -1.81 -12.00 16 4 C 0.11 1.41 5.86 86.38 0.51 1.91 16 5 C -0.17 -1.81 10.24 71.99 0.74 -1.07 16 6 C 0.24 5.62 6.55 38.47 0.25 5.87 16 7 C -0.21 -5.35 9.18 22.36 0.21 -5.14 16 8 C -0.04 -1.30 7.54 22.50 0.17 -1.13 16 9 C -0.21 -7.54 5.23 -20.08 -0.11 -7.64 16 10 C 0.56 23.66 7.04 86.69 0.61 24.27 16 11 O -0.60 -30.65 16.25 -4.04 -0.07 -30.71 16 12 N -0.59 -21.87 2.24 -826.37 -1.85 -23.72 16 13 C 0.08 2.28 8.01 127.77 1.02 3.30 16 14 C 0.13 4.71 2.79 44.99 0.13 4.84 16 15 H 0.06 2.86 6.91 -2.39 -0.02 2.84 16 16 C -0.14 -3.59 9.18 71.98 0.66 -2.93 16 17 C 0.14 6.01 5.56 86.38 0.48 6.49 16 18 N -0.74 -40.95 5.43 -343.44 -1.87 -42.81 16 19 C -0.24 -14.19 9.99 84.03 0.84 -13.35 16 20 H 0.08 4.38 7.83 -2.91 -0.02 4.36 16 21 C -0.08 -4.75 5.50 84.86 0.47 -4.28 16 22 N -0.97 -63.79 13.06 21.65 0.28 -63.51 16 23 Si 0.98 48.08 29.55 68.60 2.03 50.11 16 24 H -0.26 -11.92 7.11 99.48 0.71 -11.21 16 25 H -0.29 -14.20 7.11 99.48 0.71 -13.50 16 26 H -0.30 -14.78 7.11 99.48 0.71 -14.08 16 27 C -0.03 -0.83 9.62 22.50 0.22 -0.61 16 28 C -0.21 -5.05 9.18 22.36 0.21 -4.85 16 29 H 0.08 0.73 8.14 -2.38 -0.02 0.71 16 30 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.10 0.73 8.07 -2.39 -0.02 0.71 16 33 H 0.08 0.92 6.17 -2.39 -0.01 0.90 16 34 H 0.09 0.87 8.07 -2.39 -0.02 0.85 16 35 H 0.07 1.05 6.17 -2.39 -0.01 1.04 16 36 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 37 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 38 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 39 H 0.14 3.05 6.11 -2.91 -0.02 3.04 16 40 H 0.13 4.20 5.32 -2.91 -0.02 4.18 16 41 H 0.04 1.48 6.90 -2.39 -0.02 1.46 16 42 H 0.09 2.15 6.43 -2.39 -0.02 2.14 16 43 H 0.09 2.22 5.81 -2.39 -0.01 2.21 16 44 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 45 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 46 H 0.08 1.68 6.66 -2.39 -0.02 1.67 16 47 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 48 H 0.04 1.47 7.84 -2.38 -0.02 1.45 16 49 H 0.37 22.87 7.06 -92.71 -0.65 22.21 16 50 H 0.25 15.78 8.31 -92.70 -0.77 15.01 16 51 H 0.12 3.75 8.05 -2.91 -0.02 3.73 16 52 H 0.15 2.80 6.11 -2.91 -0.02 2.78 16 Total: -1.00 -80.85 409.13 4.61 -76.24 By element: Atomic # 1 Polarization: 40.03 SS G_CDS: 0.26 Total: 40.29 kcal Atomic # 6 Polarization: -1.53 SS G_CDS: 7.64 Total: 6.11 kcal Atomic # 7 Polarization: -136.79 SS G_CDS: -5.24 Total: -142.04 kcal Atomic # 8 Polarization: -30.65 SS G_CDS: -0.07 Total: -30.71 kcal Atomic # 14 Polarization: 48.08 SS G_CDS: 2.03 Total: 50.11 kcal Total: -80.85 4.61 -76.24 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714830014.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.862 kcal (2) G-P(sol) polarization free energy of solvation -80.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds