Wall clock time and date at job start Tue Mar 31 2020 17:49:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09007 * 109.47441 * 2 1 4 4 C 1.53003 * 109.47593 * 239.99782 * 2 1 3 5 5 N 1.46499 * 109.46708 * 64.99829 * 4 2 1 6 6 C 1.36935 * 119.99926 * 180.02562 * 5 4 2 7 7 H 1.08005 * 119.99877 * 359.97438 * 6 5 4 8 8 C 1.38811 * 120.00369 * 179.73019 * 6 5 4 9 9 N 1.31617 * 119.99773 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 120.00451 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47154 * 89.99247 * 10 8 6 12 12 H 1.48496 * 109.47375 * 209.99772 * 10 8 6 13 13 H 1.48502 * 109.46736 * 329.99467 * 10 8 6 14 14 C 1.52999 * 109.47313 * 119.99784 * 2 1 3 15 15 N 1.46498 * 109.47281 * 295.00596 * 14 2 1 16 16 C 1.34775 * 120.00533 * 179.97438 * 15 14 2 17 17 O 1.21551 * 119.99633 * 359.97438 * 16 15 14 18 18 C 1.47845 * 120.00323 * 179.97438 * 16 15 14 19 19 C 1.39576 * 120.14279 * 359.72683 * 18 16 15 20 20 C 1.37960 * 119.84931 * 179.74264 * 19 18 16 21 21 C 1.38355 * 120.14632 * 0.53513 * 20 19 18 22 22 C 1.50702 * 119.85635 * 179.76410 * 21 20 19 23 23 C 1.52995 * 109.47142 * 269.97469 * 22 21 20 24 24 N 1.46904 * 109.47409 * 179.97438 * 23 22 21 25 25 C 1.46891 * 110.99917 * 169.99589 * 24 23 22 26 26 C 1.46902 * 110.99925 * 293.95751 * 24 23 22 27 27 C 1.38359 * 120.29407 * 359.73429 * 21 20 19 28 28 C 1.37957 * 120.14199 * 359.97438 * 27 21 20 29 29 H 1.08995 * 109.47196 * 300.00119 * 1 2 3 30 30 H 1.09006 * 109.47245 * 60.00003 * 1 2 3 31 31 H 1.09000 * 109.47110 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.46692 * 305.00331 * 4 2 1 33 33 H 1.08994 * 109.47584 * 185.00195 * 4 2 1 34 34 H 0.97005 * 120.00261 * 0.02562 * 5 4 2 35 35 H 0.97004 * 120.00382 * 180.02562 * 9 8 6 36 36 H 1.09000 * 109.46775 * 54.99966 * 14 2 1 37 37 H 1.08998 * 109.47583 * 174.99732 * 14 2 1 38 38 H 0.97002 * 120.00105 * 359.97438 * 15 14 2 39 39 H 1.08000 * 120.07628 * 359.97438 * 19 18 16 40 40 H 1.07998 * 119.92467 * 180.26817 * 20 19 18 41 41 H 1.09003 * 109.46818 * 29.97485 * 22 21 20 42 42 H 1.08998 * 109.47503 * 149.97195 * 22 21 20 43 43 H 1.09003 * 109.47277 * 299.99735 * 23 22 21 44 44 H 1.09005 * 109.47054 * 59.99855 * 23 22 21 45 45 H 1.09001 * 109.47054 * 60.01078 * 25 24 23 46 46 H 1.09009 * 109.46957 * 180.02562 * 25 24 23 47 47 H 1.08997 * 109.47743 * 300.00351 * 25 24 23 48 48 H 1.08993 * 109.47143 * 59.99855 * 26 24 23 49 49 H 1.09004 * 109.46797 * 179.97438 * 26 24 23 50 50 H 1.08997 * 109.46543 * 299.99282 * 26 24 23 51 51 H 1.08001 * 119.93233 * 180.02562 * 27 21 20 52 52 H 1.08009 * 120.07402 * 179.97438 * 28 27 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 1.6525 0.0353 -2.4423 6 6 2.0011 -0.4208 -3.6855 7 1 2.5623 -1.3382 -3.7864 8 6 1.6291 0.2931 -4.8163 9 7 0.9407 1.4081 -4.6937 10 14 2.1041 -0.3295 -6.5123 11 1 1.0363 -1.2230 -7.0286 12 1 2.2736 0.8230 -7.4332 13 1 3.3803 -1.0836 -6.4231 14 6 2.0400 -0.7212 1.2492 15 7 1.6523 0.0353 2.4424 16 6 1.9954 -0.4135 3.6660 17 8 2.6261 -1.4464 3.7796 18 6 1.6047 0.3503 4.8700 19 6 0.8854 1.5396 4.7427 20 6 0.5193 2.2448 5.8706 21 6 0.8732 1.7812 7.1252 22 6 0.4744 2.5595 8.3526 23 6 1.5725 3.5679 8.6960 24 7 1.1836 4.3270 9.8921 25 6 2.3051 5.1338 10.3913 26 6 0.0090 5.1673 9.6235 27 6 1.5910 0.6059 7.2581 28 6 1.9582 -0.1119 6.1387 29 1 -0.3633 0.5138 0.8899 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.6054 -1.7198 -1.2951 33 1 3.1263 -0.7995 -1.2055 34 1 1.1488 0.8594 -2.3517 35 1 0.6804 1.9069 -5.4839 36 1 1.6053 -1.7197 1.2952 37 1 3.1263 -0.7995 1.2056 38 1 1.1487 0.8594 2.3518 39 1 0.6127 1.9051 3.7637 40 1 -0.0411 3.1629 5.7737 41 1 -0.4583 3.0895 8.1595 42 1 0.3363 1.8739 9.1886 43 1 2.5052 3.0379 8.8891 44 1 1.7106 4.2536 7.8599 45 1 2.6197 5.8357 9.6190 46 1 1.9900 5.6852 11.2772 47 1 3.1377 4.4791 10.6483 48 1 -0.8276 4.5368 9.3224 49 1 -0.2578 5.7180 10.5256 50 1 0.2406 5.8703 8.8234 51 1 1.8638 0.2492 8.2403 52 1 2.5189 -1.0291 6.2437 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715258193.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:49:39 Heat of formation + Delta-G solvation = -9.284767 kcal Electronic energy + Delta-G solvation = -27191.996235 eV Core-core repulsion = 23384.117550 eV Total energy + Delta-G solvation = -3807.878684 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.44847 -39.06431 -37.83257 -36.80075 -34.44911 -33.61657 -32.49183 -31.25597 -30.15399 -29.36619 -28.08647 -26.64696 -25.70616 -24.89240 -22.97947 -22.93955 -22.15426 -21.32785 -20.46142 -19.90803 -18.15425 -16.99211 -16.52534 -16.38244 -15.90117 -15.51035 -15.49520 -15.19134 -15.03452 -14.81549 -14.44438 -14.33075 -13.94816 -13.67064 -13.53696 -13.49182 -13.23986 -12.99138 -12.83823 -12.63280 -12.39979 -12.34366 -12.23390 -12.06509 -11.94692 -11.63816 -11.56897 -11.15408 -11.06726 -10.92034 -10.71053 -10.59028 -10.43251 -10.11524 -9.92871 -9.67405 -9.32295 -9.20330 -8.95716 -8.88294 -8.87354 -6.92725 -5.77573 -3.05879 0.54873 1.04954 2.68900 3.11310 3.40266 3.43757 3.49091 3.50642 3.63117 4.32922 4.39812 4.55758 4.57123 4.58861 4.65006 4.66173 4.79490 4.88448 5.00380 5.01967 5.04517 5.09270 5.13126 5.17112 5.20742 5.36865 5.38277 5.39223 5.45682 5.48847 5.57491 5.63330 5.68462 5.80095 5.93342 5.95890 5.98262 6.06103 6.12234 6.19688 6.22771 6.37992 6.44907 6.47242 6.47919 6.56912 6.64204 6.76488 6.85953 7.44934 7.70271 8.14508 8.41546 9.52909 10.10121 10.44981 11.45419 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.020789 B = 0.001598 C = 0.001524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.561044 B =17513.507990 C =18367.980463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.111 4.111 3 H 0.076 0.924 4 C 0.160 3.840 5 N -0.731 5.731 6 C -0.239 4.239 7 H 0.071 0.929 8 C -0.014 4.014 9 N -0.935 5.935 10 Si 0.908 3.092 11 H -0.290 1.290 12 H -0.292 1.292 13 H -0.282 1.282 14 C 0.126 3.874 15 N -0.719 5.719 16 C 0.554 3.446 17 O -0.540 6.540 18 C -0.134 4.134 19 C -0.083 4.083 20 C -0.124 4.124 21 C -0.061 4.061 22 C -0.080 4.080 23 C 0.059 3.941 24 N -0.549 5.549 25 C 0.023 3.977 26 C 0.019 3.981 27 C -0.123 4.123 28 C -0.058 4.058 29 H 0.041 0.959 30 H 0.070 0.930 31 H 0.053 0.947 32 H 0.023 0.977 33 H 0.021 0.979 34 H 0.384 0.616 35 H 0.255 0.745 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.399 0.601 39 H 0.127 0.873 40 H 0.127 0.873 41 H 0.075 0.925 42 H 0.084 0.916 43 H 0.077 0.923 44 H 0.038 0.962 45 H 0.026 0.974 46 H 0.069 0.931 47 H 0.069 0.931 48 H 0.072 0.928 49 H 0.068 0.932 50 H 0.027 0.973 51 H 0.129 0.871 52 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.051 6.710 32.186 32.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.130 4.130 3 H 0.095 0.905 4 C 0.032 3.968 5 N -0.375 5.375 6 C -0.370 4.370 7 H 0.089 0.911 8 C -0.210 4.210 9 N -0.583 5.583 10 Si 0.739 3.261 11 H -0.217 1.217 12 H -0.218 1.218 13 H -0.207 1.207 14 C 0.003 3.997 15 N -0.371 5.371 16 C 0.341 3.659 17 O -0.418 6.418 18 C -0.137 4.137 19 C -0.102 4.102 20 C -0.142 4.142 21 C -0.061 4.061 22 C -0.118 4.118 23 C -0.069 4.069 24 N -0.273 5.273 25 C -0.125 4.125 26 C -0.130 4.130 27 C -0.141 4.141 28 C -0.077 4.077 29 H 0.060 0.940 30 H 0.089 0.911 31 H 0.073 0.927 32 H 0.040 0.960 33 H 0.039 0.961 34 H 0.218 0.782 35 H 0.064 0.936 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.235 0.765 39 H 0.145 0.855 40 H 0.145 0.855 41 H 0.094 0.906 42 H 0.102 0.898 43 H 0.096 0.904 44 H 0.056 0.944 45 H 0.045 0.955 46 H 0.088 0.912 47 H 0.088 0.912 48 H 0.090 0.910 49 H 0.087 0.913 50 H 0.045 0.955 51 H 0.147 0.853 52 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -1.640 5.533 32.463 32.972 hybrid contribution 0.013 1.037 -1.748 2.033 sum -1.627 6.570 30.715 31.452 Atomic orbital electron populations 1.21796 0.94652 1.02016 1.01449 1.21561 0.96726 1.00509 0.94203 0.90534 1.20574 0.96644 0.94217 0.85334 1.42332 1.66973 1.27637 1.00572 1.19249 1.28595 1.05525 0.83656 0.91137 1.24729 1.00976 0.97448 0.97845 1.69655 1.43359 1.16864 1.28459 0.86177 0.78035 0.77522 0.84401 1.21727 1.21789 1.20744 1.21454 1.00270 0.95307 0.82705 1.45996 1.57408 1.27831 1.05872 1.18279 0.79483 0.84885 0.83246 1.90771 1.40145 1.24189 1.86736 1.20012 1.02859 0.96838 0.93997 1.21333 0.96077 0.93667 0.99114 1.20975 1.01233 1.00300 0.91670 1.20030 0.96451 0.94941 0.94728 1.20649 0.98518 0.97482 0.95121 1.22135 0.98383 0.95587 0.90783 1.61985 1.06354 1.27205 1.31739 1.22388 0.93696 0.96753 0.99644 1.22470 0.93586 0.96299 1.00606 1.21048 0.99236 0.95054 0.98810 1.21289 0.96373 0.99237 0.90764 0.94003 0.91085 0.92742 0.95951 0.96082 0.78223 0.93552 0.91153 0.91170 0.76499 0.85484 0.85545 0.90635 0.89777 0.90408 0.94410 0.95542 0.91249 0.91223 0.90964 0.91346 0.95489 0.85282 0.84575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.08 8.94 37.15 0.33 -1.75 16 2 C -0.11 -1.70 2.46 -90.62 -0.22 -1.93 16 3 H 0.08 1.18 8.14 -51.92 -0.42 0.76 16 4 C 0.16 3.19 5.65 -4.04 -0.02 3.16 16 5 N -0.73 -18.26 5.33 -59.91 -0.32 -18.58 16 6 C -0.24 -6.70 9.99 -15.06 -0.15 -6.85 16 7 H 0.07 1.93 7.83 -52.48 -0.41 1.52 16 8 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 9 N -0.93 -28.07 13.06 55.49 0.72 -27.34 16 10 Si 0.91 22.45 29.55 -169.99 -5.02 17.43 16 11 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 12 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 13 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 14 C 0.13 1.77 5.06 -4.04 -0.02 1.74 16 15 N -0.72 -8.76 5.23 -61.25 -0.32 -9.09 16 16 C 0.55 7.51 7.77 -12.33 -0.10 7.41 16 17 O -0.54 -9.21 16.35 5.32 0.09 -9.13 16 18 C -0.13 -1.46 5.87 -104.97 -0.62 -2.08 16 19 C -0.08 -0.72 9.54 -39.18 -0.37 -1.10 16 20 C -0.12 -0.93 9.68 -39.64 -0.38 -1.31 16 21 C -0.06 -0.44 5.14 -104.53 -0.54 -0.98 16 22 C -0.08 -0.46 5.26 -27.88 -0.15 -0.60 16 23 C 0.06 0.35 4.94 -3.82 -0.02 0.33 16 24 N -0.55 -3.36 5.02 -251.26 -1.26 -4.62 16 25 C 0.02 0.12 9.57 60.06 0.57 0.69 16 26 C 0.02 0.09 9.32 60.07 0.56 0.65 16 27 C -0.12 -0.98 9.68 -39.64 -0.38 -1.36 16 28 C -0.06 -0.58 9.60 -39.19 -0.38 -0.96 16 29 H 0.04 0.49 7.18 -51.93 -0.37 0.12 16 30 H 0.07 1.22 7.18 -51.93 -0.37 0.84 16 31 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 32 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.38 9.95 6.85 -40.82 -0.28 9.67 16 35 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 36 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 37 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.40 3.94 5.69 -40.82 -0.23 3.71 16 39 H 0.13 0.88 6.41 -52.49 -0.34 0.55 16 40 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 41 H 0.08 0.39 6.49 -51.93 -0.34 0.05 16 42 H 0.08 0.48 8.08 -51.93 -0.42 0.06 16 43 H 0.08 0.48 8.06 -51.93 -0.42 0.06 16 44 H 0.04 0.24 8.12 -51.93 -0.42 -0.18 16 45 H 0.03 0.13 8.14 -51.93 -0.42 -0.29 16 46 H 0.07 0.30 8.12 -51.92 -0.42 -0.12 16 47 H 0.07 0.33 8.12 -51.93 -0.42 -0.09 16 48 H 0.07 0.33 6.47 -51.93 -0.34 -0.01 16 49 H 0.07 0.30 8.12 -51.93 -0.42 -0.12 16 50 H 0.03 0.13 8.14 -51.93 -0.42 -0.29 16 51 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 52 H 0.14 1.39 7.65 -52.48 -0.40 0.99 16 LS Contribution 419.79 15.07 6.33 6.33 Total: -1.00 -33.11 419.79 -10.73 -43.85 By element: Atomic # 1 Polarization: 15.54 SS G_CDS: -8.97 Total: 6.57 kcal Atomic # 6 Polarization: -3.44 SS G_CDS: -1.98 Total: -5.42 kcal Atomic # 7 Polarization: -58.45 SS G_CDS: -1.18 Total: -59.63 kcal Atomic # 8 Polarization: -9.21 SS G_CDS: 0.09 Total: -9.13 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.43 kcal Total LS contribution 6.33 Total: 6.33 kcal Total: -33.11 -10.73 -43.85 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715258193.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.562 kcal (2) G-P(sol) polarization free energy of solvation -33.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds