Wall clock time and date at job start Tue Mar 31 2020 17:49:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09007 * 109.47441 * 2 1 4 4 C 1.53003 * 109.47593 * 239.99782 * 2 1 3 5 5 N 1.46499 * 109.46708 * 64.99829 * 4 2 1 6 6 C 1.36935 * 119.99926 * 180.02562 * 5 4 2 7 7 H 1.08005 * 119.99877 * 359.97438 * 6 5 4 8 8 C 1.38811 * 120.00369 * 179.73019 * 6 5 4 9 9 N 1.31617 * 119.99773 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 120.00451 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47154 * 89.99247 * 10 8 6 12 12 H 1.48496 * 109.47375 * 209.99772 * 10 8 6 13 13 H 1.48502 * 109.46736 * 329.99467 * 10 8 6 14 14 C 1.52999 * 109.47313 * 119.99784 * 2 1 3 15 15 N 1.46498 * 109.47281 * 295.00596 * 14 2 1 16 16 C 1.34775 * 120.00533 * 179.97438 * 15 14 2 17 17 O 1.21551 * 119.99633 * 359.97438 * 16 15 14 18 18 C 1.47845 * 120.00323 * 179.97438 * 16 15 14 19 19 C 1.39576 * 120.14279 * 359.72683 * 18 16 15 20 20 C 1.37960 * 119.84931 * 179.74264 * 19 18 16 21 21 C 1.38355 * 120.14632 * 0.53513 * 20 19 18 22 22 C 1.50702 * 119.85635 * 179.76410 * 21 20 19 23 23 C 1.52995 * 109.47142 * 269.97469 * 22 21 20 24 24 N 1.46904 * 109.47409 * 179.97438 * 23 22 21 25 25 C 1.46891 * 110.99917 * 169.99589 * 24 23 22 26 26 C 1.46902 * 110.99925 * 293.95751 * 24 23 22 27 27 C 1.38359 * 120.29407 * 359.73429 * 21 20 19 28 28 C 1.37957 * 120.14199 * 359.97438 * 27 21 20 29 29 H 1.08995 * 109.47196 * 300.00119 * 1 2 3 30 30 H 1.09006 * 109.47245 * 60.00003 * 1 2 3 31 31 H 1.09000 * 109.47110 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.46692 * 305.00331 * 4 2 1 33 33 H 1.08994 * 109.47584 * 185.00195 * 4 2 1 34 34 H 0.97005 * 120.00261 * 0.02562 * 5 4 2 35 35 H 0.97004 * 120.00382 * 180.02562 * 9 8 6 36 36 H 1.09000 * 109.46775 * 54.99966 * 14 2 1 37 37 H 1.08998 * 109.47583 * 174.99732 * 14 2 1 38 38 H 0.97002 * 120.00105 * 359.97438 * 15 14 2 39 39 H 1.08000 * 120.07628 * 359.97438 * 19 18 16 40 40 H 1.07998 * 119.92467 * 180.26817 * 20 19 18 41 41 H 1.09003 * 109.46818 * 29.97485 * 22 21 20 42 42 H 1.08998 * 109.47503 * 149.97195 * 22 21 20 43 43 H 1.09003 * 109.47277 * 299.99735 * 23 22 21 44 44 H 1.09005 * 109.47054 * 59.99855 * 23 22 21 45 45 H 1.09001 * 109.47054 * 60.01078 * 25 24 23 46 46 H 1.09009 * 109.46957 * 180.02562 * 25 24 23 47 47 H 1.08997 * 109.47743 * 300.00351 * 25 24 23 48 48 H 1.08993 * 109.47143 * 59.99855 * 26 24 23 49 49 H 1.09004 * 109.46797 * 179.97438 * 26 24 23 50 50 H 1.08997 * 109.46543 * 299.99282 * 26 24 23 51 51 H 1.08001 * 119.93233 * 180.02562 * 27 21 20 52 52 H 1.08009 * 120.07402 * 179.97438 * 28 27 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 1.6525 0.0353 -2.4423 6 6 2.0011 -0.4208 -3.6855 7 1 2.5623 -1.3382 -3.7864 8 6 1.6291 0.2931 -4.8163 9 7 0.9407 1.4081 -4.6937 10 14 2.1041 -0.3295 -6.5123 11 1 1.0363 -1.2230 -7.0286 12 1 2.2736 0.8230 -7.4332 13 1 3.3803 -1.0836 -6.4231 14 6 2.0400 -0.7212 1.2492 15 7 1.6523 0.0353 2.4424 16 6 1.9954 -0.4135 3.6660 17 8 2.6261 -1.4464 3.7796 18 6 1.6047 0.3503 4.8700 19 6 0.8854 1.5396 4.7427 20 6 0.5193 2.2448 5.8706 21 6 0.8732 1.7812 7.1252 22 6 0.4744 2.5595 8.3526 23 6 1.5725 3.5679 8.6960 24 7 1.1836 4.3270 9.8921 25 6 2.3051 5.1338 10.3913 26 6 0.0090 5.1673 9.6235 27 6 1.5910 0.6059 7.2581 28 6 1.9582 -0.1119 6.1387 29 1 -0.3633 0.5138 0.8899 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.6054 -1.7198 -1.2951 33 1 3.1263 -0.7995 -1.2055 34 1 1.1488 0.8594 -2.3517 35 1 0.6804 1.9069 -5.4839 36 1 1.6053 -1.7197 1.2952 37 1 3.1263 -0.7995 1.2056 38 1 1.1487 0.8594 2.3518 39 1 0.6127 1.9051 3.7637 40 1 -0.0411 3.1629 5.7737 41 1 -0.4583 3.0895 8.1595 42 1 0.3363 1.8739 9.1886 43 1 2.5052 3.0379 8.8891 44 1 1.7106 4.2536 7.8599 45 1 2.6197 5.8357 9.6190 46 1 1.9900 5.6852 11.2772 47 1 3.1377 4.4791 10.6483 48 1 -0.8276 4.5368 9.3224 49 1 -0.2578 5.7180 10.5256 50 1 0.2406 5.8703 8.8234 51 1 1.8638 0.2492 8.2403 52 1 2.5189 -1.0291 6.2437 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715258193.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:49:38 Heat of formation + Delta-G solvation = -30.548464 kcal Electronic energy + Delta-G solvation = -27192.918298 eV Core-core repulsion = 23384.117550 eV Total energy + Delta-G solvation = -3808.800747 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.33055 -39.85787 -38.41684 -38.11471 -36.02386 -34.48287 -33.87059 -32.11673 -31.72556 -30.08611 -28.45469 -27.80787 -27.17317 -25.81490 -24.41202 -23.62008 -23.15452 -21.92707 -21.51204 -21.03908 -19.40891 -18.70932 -17.48455 -16.96308 -16.72812 -16.56883 -16.41208 -15.98006 -15.90133 -15.73946 -15.57581 -15.44609 -15.34452 -14.88316 -14.56955 -14.30559 -14.11457 -14.02506 -13.83022 -13.58923 -13.56793 -13.22470 -12.96806 -12.84705 -12.80133 -12.68793 -12.45346 -12.22773 -12.18479 -12.17187 -12.11755 -12.00600 -11.73056 -11.67121 -11.63406 -11.06233 -10.94553 -10.23230 -9.96184 -9.70463 -9.31667 -8.99514 -7.95723 -5.23885 -0.18732 0.41066 1.47811 1.49036 1.57575 1.80030 2.08767 2.56609 2.81595 3.04411 3.38090 3.64284 3.69797 3.80990 3.94454 3.97554 4.00223 4.06923 4.09318 4.22803 4.32349 4.34389 4.42678 4.48656 4.51595 4.52732 4.62931 4.68658 4.71547 4.74433 4.75411 4.86390 4.92659 4.94151 5.02395 5.02594 5.04470 5.10069 5.11831 5.20511 5.27511 5.32332 5.36612 5.40094 5.46728 5.49905 5.60456 5.91752 6.06613 6.09281 6.26913 6.47523 7.13464 7.33998 8.08844 8.33562 9.27612 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.020789 B = 0.001598 C = 0.001524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.561044 B =17513.507990 C =18367.980463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.094 4.094 3 H 0.080 0.920 4 C 0.157 3.843 5 N -0.740 5.740 6 C -0.249 4.249 7 H 0.073 0.927 8 C -0.072 4.072 9 N -0.967 5.967 10 Si 0.972 3.028 11 H -0.287 1.287 12 H -0.294 1.294 13 H -0.272 1.272 14 C 0.137 3.863 15 N -0.709 5.709 16 C 0.553 3.447 17 O -0.584 6.584 18 C -0.156 4.156 19 C -0.082 4.082 20 C -0.124 4.124 21 C -0.053 4.053 22 C -0.073 4.073 23 C 0.062 3.938 24 N -0.560 5.560 25 C 0.022 3.978 26 C 0.017 3.983 27 C -0.123 4.123 28 C -0.072 4.072 29 H 0.075 0.925 30 H 0.044 0.956 31 H 0.051 0.949 32 H 0.021 0.979 33 H 0.020 0.980 34 H 0.377 0.623 35 H 0.252 0.748 36 H 0.065 0.935 37 H 0.062 0.938 38 H 0.412 0.588 39 H 0.145 0.855 40 H 0.151 0.849 41 H 0.086 0.914 42 H 0.087 0.913 43 H 0.074 0.926 44 H 0.034 0.966 45 H 0.024 0.976 46 H 0.076 0.924 47 H 0.070 0.930 48 H 0.078 0.922 49 H 0.073 0.927 50 H 0.026 0.974 51 H 0.147 0.853 52 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.717 7.602 33.594 34.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.113 4.113 3 H 0.098 0.902 4 C 0.029 3.971 5 N -0.384 5.384 6 C -0.380 4.380 7 H 0.091 0.909 8 C -0.265 4.265 9 N -0.617 5.617 10 Si 0.801 3.199 11 H -0.214 1.214 12 H -0.220 1.220 13 H -0.197 1.197 14 C 0.013 3.987 15 N -0.361 5.361 16 C 0.342 3.658 17 O -0.465 6.465 18 C -0.159 4.159 19 C -0.100 4.100 20 C -0.141 4.141 21 C -0.054 4.054 22 C -0.111 4.111 23 C -0.066 4.066 24 N -0.284 5.284 25 C -0.126 4.126 26 C -0.131 4.131 27 C -0.141 4.141 28 C -0.091 4.091 29 H 0.094 0.906 30 H 0.063 0.937 31 H 0.070 0.930 32 H 0.039 0.961 33 H 0.038 0.962 34 H 0.210 0.790 35 H 0.060 0.940 36 H 0.084 0.916 37 H 0.080 0.920 38 H 0.251 0.749 39 H 0.162 0.838 40 H 0.168 0.832 41 H 0.104 0.896 42 H 0.105 0.895 43 H 0.092 0.908 44 H 0.052 0.948 45 H 0.043 0.957 46 H 0.094 0.906 47 H 0.089 0.911 48 H 0.096 0.904 49 H 0.092 0.908 50 H 0.044 0.956 51 H 0.165 0.835 52 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -2.309 6.426 33.895 34.576 hybrid contribution 0.222 0.775 -2.060 2.212 sum -2.087 7.201 31.835 32.706 Atomic orbital electron populations 1.21733 0.93809 1.02001 1.01800 1.21335 0.97219 1.00096 0.92654 0.90191 1.20718 0.96553 0.94155 0.85625 1.42486 1.66844 1.27774 1.01273 1.19637 1.27893 1.05430 0.85087 0.90893 1.25522 1.01599 0.97917 1.01434 1.69799 1.44779 1.18077 1.29088 0.85158 0.78013 0.76835 0.79860 1.21397 1.22036 1.19654 1.21180 0.99671 0.95095 0.82759 1.45827 1.57199 1.28039 1.05015 1.18723 0.78573 0.84445 0.84079 1.90742 1.42254 1.26205 1.87346 1.19888 1.05022 0.98009 0.92946 1.21524 0.95276 0.92719 1.00518 1.21280 1.00817 1.00836 0.91203 1.20264 0.95227 0.94446 0.95461 1.20617 0.98783 0.97301 0.94362 1.22084 0.98309 0.95517 0.90719 1.62007 1.06922 1.27746 1.31734 1.22419 0.93592 0.96734 0.99845 1.22512 0.93343 0.96329 1.00887 1.21238 0.98879 0.95075 0.98898 1.21329 0.96972 0.99404 0.91377 0.90632 0.93661 0.92961 0.96059 0.96236 0.79047 0.93963 0.91643 0.91983 0.74930 0.83784 0.83153 0.89559 0.89486 0.90779 0.94795 0.95711 0.90561 0.91108 0.90365 0.90844 0.95584 0.83508 0.85755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.85 8.94 71.98 0.64 -3.20 16 2 C -0.09 -2.82 2.46 -10.80 -0.03 -2.84 16 3 H 0.08 2.38 8.14 -2.38 -0.02 2.36 16 4 C 0.16 6.21 5.65 86.38 0.49 6.70 16 5 N -0.74 -37.27 5.33 -343.46 -1.83 -39.10 16 6 C -0.25 -13.97 9.99 84.03 0.84 -13.13 16 7 H 0.07 3.97 7.83 -2.91 -0.02 3.95 16 8 C -0.07 -4.15 5.50 84.86 0.47 -3.68 16 9 N -0.97 -58.58 13.06 21.65 0.28 -58.29 16 10 Si 0.97 46.20 29.55 68.60 2.03 48.23 16 11 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 12 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 13 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 14 C 0.14 3.76 5.06 86.38 0.44 4.20 16 15 N -0.71 -16.49 5.23 -465.98 -2.44 -18.93 16 16 C 0.55 14.87 7.77 86.79 0.67 15.54 16 17 O -0.58 -20.40 16.35 -3.88 -0.06 -20.47 16 18 C -0.16 -3.28 5.87 -20.09 -0.12 -3.40 16 19 C -0.08 -1.24 9.54 22.53 0.21 -1.03 16 20 C -0.12 -1.50 9.68 22.23 0.22 -1.28 16 21 C -0.05 -0.64 5.14 -19.81 -0.10 -0.74 16 22 C -0.07 -0.64 5.26 29.85 0.16 -0.48 16 23 C 0.06 0.61 4.94 86.30 0.43 1.04 16 24 N -0.56 -5.78 5.02 -948.85 -4.76 -10.54 16 25 C 0.02 0.19 9.57 127.69 1.22 1.42 16 26 C 0.02 0.14 9.32 127.69 1.19 1.33 16 27 C -0.12 -1.76 9.68 22.23 0.22 -1.55 16 28 C -0.07 -1.42 9.60 22.53 0.22 -1.20 16 29 H 0.07 1.61 7.18 -2.39 -0.02 1.59 16 30 H 0.04 1.53 7.18 -2.38 -0.02 1.51 16 31 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.38 19.80 6.85 -92.70 -0.64 19.16 16 35 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 36 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 37 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 38 H 0.41 7.27 5.69 -92.71 -0.53 6.74 16 39 H 0.14 1.59 6.41 -2.91 -0.02 1.57 16 40 H 0.15 1.11 8.06 -2.91 -0.02 1.09 16 41 H 0.09 0.61 6.49 -2.39 -0.02 0.59 16 42 H 0.09 0.76 8.08 -2.39 -0.02 0.74 16 43 H 0.07 0.78 8.06 -2.39 -0.02 0.77 16 44 H 0.03 0.36 8.12 -2.38 -0.02 0.35 16 45 H 0.02 0.22 8.14 -2.39 -0.02 0.20 16 46 H 0.08 0.54 8.12 -2.38 -0.02 0.52 16 47 H 0.07 0.58 8.12 -2.39 -0.02 0.56 16 48 H 0.08 0.51 6.47 -2.39 -0.02 0.49 16 49 H 0.07 0.50 8.12 -2.39 -0.02 0.48 16 50 H 0.03 0.21 8.14 -2.39 -0.02 0.19 16 51 H 0.15 1.50 8.06 -2.91 -0.02 1.47 16 52 H 0.12 2.67 7.65 -2.91 -0.02 2.65 16 Total: -1.00 -71.37 419.79 0.12 -71.25 By element: Atomic # 1 Polarization: 30.44 SS G_CDS: -0.26 Total: 30.18 kcal Atomic # 6 Polarization: -9.50 SS G_CDS: 7.16 Total: -2.34 kcal Atomic # 7 Polarization: -118.11 SS G_CDS: -8.75 Total: -126.86 kcal Atomic # 8 Polarization: -20.40 SS G_CDS: -0.06 Total: -20.47 kcal Atomic # 14 Polarization: 46.20 SS G_CDS: 2.03 Total: 48.23 kcal Total: -71.37 0.12 -71.25 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715258193.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.702 kcal (2) G-P(sol) polarization free energy of solvation -71.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds