Wall clock time and date at job start Tue Mar 31 2020 17:50:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.47048 * 2 1 4 4 C 1.53000 * 109.46922 * 240.00208 * 2 1 3 5 5 N 1.46504 * 109.46807 * 184.99835 * 4 2 1 6 6 C 1.36933 * 119.99978 * 179.97438 * 5 4 2 7 7 H 1.08004 * 119.99952 * 359.97438 * 6 5 4 8 8 C 1.38819 * 120.00393 * 180.02562 * 6 5 4 9 9 N 1.31620 * 120.00073 * 180.02562 * 8 6 5 10 10 Si 1.86799 * 119.99400 * 359.97438 * 8 6 5 11 11 H 1.48497 * 109.47365 * 90.00514 * 10 8 6 12 12 H 1.48500 * 109.46958 * 210.00094 * 10 8 6 13 13 H 1.48497 * 109.47337 * 329.99907 * 10 8 6 14 14 N 1.46499 * 109.47359 * 120.00011 * 2 1 3 15 15 C 1.46506 * 119.99537 * 59.99712 * 14 2 1 16 16 C 1.34777 * 120.00199 * 240.00361 * 14 2 1 17 17 O 1.21283 * 119.99750 * 359.97438 * 16 14 2 18 18 C 1.50702 * 119.99928 * 180.27479 * 16 14 2 19 19 C 1.52996 * 109.47159 * 179.72352 * 18 16 14 20 20 C 1.50697 * 109.47491 * 179.97438 * 19 18 16 21 21 C 1.38282 * 119.92268 * 269.72905 * 20 19 18 22 22 C 1.38112 * 120.07633 * 179.72116 * 21 20 19 23 23 C 1.38914 * 119.91766 * 0.54761 * 22 21 20 24 24 N 1.39678 * 120.07111 * 179.70563 * 23 22 21 25 25 C 1.46496 * 119.99823 * 180.02562 * 24 23 22 26 26 C 1.46501 * 119.99861 * 0.02562 * 24 23 22 27 27 C 1.38911 * 119.85426 * 359.72421 * 23 22 21 28 28 C 1.38106 * 119.92552 * 0.02562 * 27 23 22 29 29 H 1.08995 * 109.47095 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47156 * 300.00199 * 1 2 3 31 31 H 1.08998 * 109.46768 * 59.99970 * 1 2 3 32 32 H 1.08997 * 109.47347 * 304.99884 * 4 2 1 33 33 H 1.09000 * 109.47615 * 65.00465 * 4 2 1 34 34 H 0.96994 * 120.00463 * 0.02562 * 5 4 2 35 35 H 0.96999 * 119.99594 * 179.97438 * 9 8 6 36 36 H 1.08998 * 109.46921 * 269.99744 * 15 14 2 37 37 H 1.08994 * 109.46996 * 30.00327 * 15 14 2 38 38 H 1.09001 * 109.46578 * 150.00190 * 15 14 2 39 39 H 1.09004 * 109.46965 * 299.72211 * 18 16 14 40 40 H 1.08994 * 109.46990 * 59.72065 * 18 16 14 41 41 H 1.09004 * 109.47066 * 299.99797 * 19 18 16 42 42 H 1.09000 * 109.47234 * 59.99288 * 19 18 16 43 43 H 1.08010 * 119.96351 * 359.97303 * 21 20 19 44 44 H 1.07999 * 120.03924 * 180.27043 * 22 21 20 45 45 H 1.08996 * 109.47353 * 89.99917 * 25 24 23 46 46 H 1.08999 * 109.47174 * 209.99867 * 25 24 23 47 47 H 1.09001 * 109.47411 * 329.99243 * 25 24 23 48 48 H 1.08990 * 109.47228 * 60.00064 * 26 24 23 49 49 H 1.09002 * 109.46902 * 180.02562 * 26 24 23 50 50 H 1.09006 * 109.47005 * 300.00143 * 26 24 23 51 51 H 1.08002 * 120.03824 * 180.02562 * 27 23 22 52 52 H 1.08000 * 119.96440 * 179.97438 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 3.5000 -0.8263 -1.1906 6 6 4.1838 -1.4387 -2.2067 7 1 3.6466 -1.8446 -3.0512 8 6 5.5672 -1.5388 -2.1510 9 7 6.2244 -2.1270 -3.1279 10 14 6.4961 -0.8373 -0.6900 11 1 6.6268 -1.8792 0.3601 12 1 7.8472 -0.4013 -1.1255 13 1 5.7529 0.3262 -0.1431 14 7 2.0184 -0.6906 1.1961 15 6 1.6644 -2.0932 1.4279 16 6 2.7932 -0.0356 2.0833 17 8 3.0865 1.1254 1.8912 18 6 3.3007 -0.7479 3.3106 19 6 4.1552 0.2122 4.1407 20 6 4.6622 -0.4998 5.3683 21 6 3.9213 -0.4747 6.5356 22 6 4.3801 -1.1309 7.6609 23 6 5.5929 -1.8072 7.6223 24 7 6.0630 -2.4668 8.7603 25 6 7.3424 -3.1791 8.7180 26 6 5.2764 -2.4464 9.9961 27 6 6.3373 -1.8258 6.4497 28 6 5.8701 -1.1718 5.3266 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.6054 -1.7197 -1.2952 33 1 1.7517 -0.1583 -2.1370 34 1 3.9824 -0.4628 -0.4317 35 1 7.1911 -2.1966 -3.0891 36 1 0.7376 -2.1443 1.9993 37 1 1.5295 -2.5968 0.4708 38 1 2.4629 -2.5819 1.9863 39 1 2.4553 -1.0905 3.9075 40 1 3.9042 -1.6043 3.0102 41 1 5.0005 0.5548 3.5439 42 1 3.5517 1.0687 4.4411 43 1 2.9807 0.0554 6.5663 44 1 3.7989 -1.1145 8.5710 45 1 8.1460 -2.5000 9.0027 46 1 7.3137 -4.0192 9.4119 47 1 7.5195 -3.5483 7.7078 48 1 4.3015 -2.8981 9.8138 49 1 5.7995 -3.0096 10.7690 50 1 5.1435 -1.4157 10.3251 51 1 7.2804 -2.3510 6.4162 52 1 6.4485 -1.1854 4.4146 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715345966.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:50:23 Heat of formation + Delta-G solvation = 11.306802 kcal Electronic energy + Delta-G solvation = -28900.086211 eV Core-core repulsion = 25093.100444 eV Total energy + Delta-G solvation = -3806.985767 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.05373 -39.60283 -36.98269 -36.38294 -34.11532 -33.33682 -31.86960 -31.25539 -30.53019 -29.13173 -28.45110 -26.68638 -25.96729 -25.57895 -23.35545 -22.45966 -22.09550 -20.87167 -20.22902 -18.73995 -17.61288 -17.51490 -16.98615 -16.18452 -15.83004 -15.51486 -15.36770 -15.07197 -14.58865 -14.35119 -14.15745 -13.91262 -13.70877 -13.65300 -13.35874 -13.00563 -12.85043 -12.78698 -12.64332 -12.47560 -12.41736 -12.34028 -12.27156 -12.24475 -11.97174 -11.76060 -11.69943 -11.22252 -11.15984 -10.90425 -10.76728 -10.70245 -10.51023 -10.07096 -9.86193 -9.55780 -9.43143 -8.98626 -8.85915 -8.33887 -7.41169 -7.18190 -5.73676 -3.07978 1.37571 1.48400 2.86076 2.92226 3.26322 3.40605 3.49511 3.53549 3.78909 4.62633 4.64444 4.65453 4.66199 4.88286 4.89843 4.98110 5.05696 5.12641 5.17981 5.22828 5.27667 5.30453 5.32263 5.36414 5.37465 5.43553 5.48750 5.51851 5.57700 5.61791 5.65519 5.71170 5.87003 5.87477 5.91507 5.98750 6.02961 6.09610 6.19591 6.24085 6.26358 6.36388 6.45835 6.65878 6.73671 6.76693 6.92206 7.00313 7.29242 7.67079 8.02694 8.44941 8.48104 9.25914 9.98933 10.19668 11.44690 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.012061 B = 0.002950 C = 0.002525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2320.912685 B = 9489.333989 C =11084.849454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.120 3.880 3 H 0.100 0.900 4 C 0.148 3.852 5 N -0.752 5.752 6 C -0.242 4.242 7 H 0.090 0.910 8 C 0.006 3.994 9 N -0.935 5.935 10 Si 0.874 3.126 11 H -0.284 1.284 12 H -0.290 1.290 13 H -0.272 1.272 14 N -0.601 5.601 15 C 0.079 3.921 16 C 0.511 3.489 17 O -0.544 6.544 18 C -0.133 4.133 19 C -0.059 4.059 20 C -0.134 4.134 21 C -0.069 4.069 22 C -0.194 4.194 23 C 0.205 3.795 24 N -0.642 5.642 25 C 0.094 3.906 26 C 0.098 3.902 27 C -0.193 4.193 28 C -0.067 4.067 29 H 0.058 0.942 30 H 0.054 0.946 31 H 0.067 0.933 32 H 0.029 0.971 33 H 0.036 0.964 34 H 0.363 0.637 35 H 0.259 0.741 36 H 0.050 0.950 37 H 0.080 0.920 38 H 0.069 0.931 39 H 0.091 0.909 40 H 0.094 0.906 41 H 0.076 0.924 42 H 0.076 0.924 43 H 0.120 0.880 44 H 0.118 0.882 45 H 0.046 0.954 46 H 0.064 0.936 47 H 0.069 0.931 48 H 0.052 0.948 49 H 0.070 0.930 50 H 0.052 0.948 51 H 0.121 0.879 52 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.999 -1.654 26.378 27.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.017 3.983 3 H 0.118 0.882 4 C 0.020 3.980 5 N -0.397 5.397 6 C -0.371 4.371 7 H 0.107 0.893 8 C -0.190 4.190 9 N -0.583 5.583 10 Si 0.704 3.296 11 H -0.211 1.211 12 H -0.217 1.217 13 H -0.197 1.197 14 N -0.334 5.334 15 C -0.064 4.064 16 C 0.299 3.701 17 O -0.421 6.421 18 C -0.173 4.173 19 C -0.097 4.097 20 C -0.135 4.135 21 C -0.087 4.087 22 C -0.216 4.216 23 C 0.105 3.895 24 N -0.355 5.355 25 C -0.050 4.050 26 C -0.045 4.045 27 C -0.215 4.215 28 C -0.086 4.086 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.086 0.914 32 H 0.047 0.953 33 H 0.054 0.946 34 H 0.196 0.804 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.098 0.902 38 H 0.088 0.912 39 H 0.109 0.891 40 H 0.112 0.888 41 H 0.095 0.905 42 H 0.094 0.906 43 H 0.138 0.862 44 H 0.136 0.864 45 H 0.064 0.936 46 H 0.083 0.917 47 H 0.088 0.912 48 H 0.071 0.929 49 H 0.089 0.911 50 H 0.071 0.929 51 H 0.139 0.861 52 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -6.734 -1.258 26.216 27.097 hybrid contribution 0.849 0.178 0.958 1.292 sum -5.885 -1.080 27.174 27.825 Atomic orbital electron populations 1.22027 0.94904 1.02156 1.02070 1.21441 0.93629 0.98529 0.84681 0.88220 1.20981 0.85741 0.97358 0.93930 1.42650 1.01284 1.71136 1.24672 1.19051 0.89884 1.28978 0.99231 0.89257 1.24628 0.96155 1.00606 0.97587 1.69701 1.07269 1.48753 1.32572 0.86660 0.79907 0.79524 0.83477 1.21078 1.21653 1.19726 1.47793 1.50755 1.12377 1.22512 1.21745 0.99987 0.81811 1.02864 1.20717 0.77853 0.87050 0.84461 1.90682 1.57468 1.17230 1.76725 1.21704 1.01045 1.00000 0.94566 1.20236 0.99859 0.96662 0.92931 1.19678 0.96044 1.02304 0.95520 1.20787 0.98765 0.97333 0.91851 1.20580 0.96857 1.04542 0.99614 1.17807 0.92977 0.92215 0.86532 1.46283 1.22238 1.57328 1.09665 1.21645 0.84800 0.95807 1.02711 1.21557 0.95776 1.01439 0.85735 1.20673 1.01718 1.06531 0.92568 1.20898 0.95187 0.94943 0.97552 0.92302 0.92672 0.91357 0.95329 0.94617 0.80356 0.93127 0.93123 0.90155 0.91229 0.89083 0.88799 0.90489 0.90575 0.86201 0.86405 0.93553 0.91713 0.91230 0.92919 0.91091 0.92950 0.86142 0.85986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 9.19 37.16 0.34 -1.55 16 2 C 0.12 1.99 2.80 -67.93 -0.19 1.80 16 3 H 0.10 1.88 6.90 -51.93 -0.36 1.52 16 4 C 0.15 2.90 5.50 -4.04 -0.02 2.88 16 5 N -0.75 -18.64 5.24 -59.90 -0.31 -18.95 16 6 C -0.24 -7.02 10.47 -15.06 -0.16 -7.17 16 7 H 0.09 2.74 8.06 -52.48 -0.42 2.32 16 8 C 0.01 0.18 5.50 -17.43 -0.10 0.08 16 9 N -0.93 -29.99 13.97 55.49 0.78 -29.21 16 10 Si 0.87 23.23 27.73 -169.99 -4.71 18.52 16 11 H -0.28 -7.31 7.11 56.52 0.40 -6.90 16 12 H -0.29 -7.76 7.11 56.52 0.40 -7.36 16 13 H -0.27 -7.22 6.52 56.52 0.37 -6.86 16 14 N -0.60 -9.50 2.24 -173.93 -0.39 -9.89 16 15 C 0.08 1.00 9.31 59.85 0.56 1.55 16 16 C 0.51 8.67 7.38 -10.98 -0.08 8.58 16 17 O -0.54 -11.16 15.31 5.55 0.09 -11.07 16 18 C -0.13 -1.78 4.23 -27.88 -0.12 -1.90 16 19 C -0.06 -0.80 4.63 -27.89 -0.13 -0.93 16 20 C -0.13 -1.64 5.14 -104.59 -0.54 -2.18 16 21 C -0.07 -0.75 9.69 -39.61 -0.38 -1.13 16 22 C -0.19 -2.02 9.31 -39.38 -0.37 -2.38 16 23 C 0.21 2.23 6.55 -83.78 -0.55 1.68 16 24 N -0.64 -5.63 3.41 -187.55 -0.64 -6.27 16 25 C 0.09 0.63 10.16 59.84 0.61 1.24 16 26 C 0.10 0.61 9.40 59.85 0.56 1.17 16 27 C -0.19 -2.20 9.21 -39.38 -0.36 -2.56 16 28 C -0.07 -0.84 9.69 -39.61 -0.38 -1.22 16 29 H 0.06 0.66 7.67 -51.93 -0.40 0.26 16 30 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.03 0.54 6.88 -51.93 -0.36 0.19 16 33 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.36 9.24 4.93 -40.82 -0.20 9.04 16 35 H 0.26 7.92 8.31 -40.82 -0.34 7.58 16 36 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 37 H 0.08 1.08 6.53 -51.93 -0.34 0.74 16 38 H 0.07 0.82 6.43 -51.93 -0.33 0.49 16 39 H 0.09 0.98 8.11 -51.93 -0.42 0.56 16 40 H 0.09 1.26 7.40 -51.93 -0.38 0.88 16 41 H 0.08 1.18 8.04 -51.93 -0.42 0.76 16 42 H 0.08 1.01 8.04 -51.93 -0.42 0.59 16 43 H 0.12 1.11 8.06 -52.48 -0.42 0.68 16 44 H 0.12 1.01 6.73 -52.49 -0.35 0.65 16 45 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 46 H 0.06 0.32 7.92 -51.93 -0.41 -0.09 16 47 H 0.07 0.48 6.20 -51.93 -0.32 0.16 16 48 H 0.05 0.31 7.95 -51.93 -0.41 -0.10 16 49 H 0.07 0.31 7.79 -51.93 -0.40 -0.10 16 50 H 0.05 0.31 7.95 -51.93 -0.41 -0.10 16 51 H 0.12 1.20 6.14 -52.49 -0.32 0.88 16 52 H 0.12 1.51 8.06 -52.49 -0.42 1.09 16 LS Contribution 411.61 15.07 6.20 6.20 Total: -1.00 -35.90 411.61 -9.12 -45.02 By element: Atomic # 1 Polarization: 16.51 SS G_CDS: -8.82 Total: 7.69 kcal Atomic # 6 Polarization: -0.73 SS G_CDS: -1.31 Total: -2.04 kcal Atomic # 7 Polarization: -63.75 SS G_CDS: -0.57 Total: -64.32 kcal Atomic # 8 Polarization: -11.16 SS G_CDS: 0.09 Total: -11.07 kcal Atomic # 14 Polarization: 23.23 SS G_CDS: -4.71 Total: 18.52 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -35.90 -9.12 -45.02 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715345966.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.328 kcal (2) G-P(sol) polarization free energy of solvation -35.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.022 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds