Wall clock time and date at job start Tue Mar 31 2020 17:27:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.46970 * 2 1 4 4 C 1.53002 * 109.47204 * 240.00092 * 2 1 3 5 5 C 1.50697 * 109.47104 * 65.00104 * 4 2 1 6 6 O 1.21284 * 120.00037 * 359.97438 * 5 4 2 7 7 N 1.34776 * 119.99907 * 180.02562 * 5 4 2 8 8 C 1.46930 * 120.63108 * 354.85553 * 7 5 4 9 9 C 1.53190 * 108.77589 * 233.58877 * 8 7 5 10 10 C 1.53039 * 109.31371 * 305.36527 * 9 8 7 11 11 C 1.53045 * 109.53775 * 61.36967 * 10 9 8 12 12 C 1.46932 * 120.62952 * 174.58211 * 7 5 4 13 13 H 1.09000 * 109.58071 * 246.19460 * 12 7 5 14 14 C 1.52999 * 109.58626 * 6.62289 * 12 7 5 15 15 C 1.53005 * 109.46908 * 181.23354 * 14 12 7 16 16 N 1.46496 * 109.46902 * 174.73941 * 15 14 12 17 17 C 1.36936 * 119.99558 * 179.97438 * 16 15 14 18 18 H 1.07992 * 120.00499 * 0.02562 * 17 16 15 19 19 C 1.38817 * 119.99924 * 180.02562 * 17 16 15 20 20 N 1.31622 * 119.99931 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00218 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.47015 * 60.00090 * 21 19 17 23 23 H 1.48502 * 109.47184 * 179.97438 * 21 19 17 24 24 H 1.48494 * 109.47024 * 299.99785 * 21 19 17 25 25 N 1.46500 * 109.47564 * 119.99674 * 2 1 3 26 26 C 1.36337 * 125.63877 * 240.00777 * 25 2 1 27 27 C 1.34851 * 108.21895 * 179.97438 * 26 25 2 28 28 C 1.40893 * 107.41527 * 359.97438 * 27 26 25 29 29 C 1.34845 * 107.42118 * 0.02562 * 28 27 26 30 30 H 1.08998 * 109.47071 * 60.00122 * 1 2 3 31 31 H 1.09005 * 109.46970 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47536 * 299.99850 * 1 2 3 33 33 H 1.09003 * 109.47023 * 184.99571 * 4 2 1 34 34 H 1.08991 * 109.46874 * 304.99710 * 4 2 1 35 35 H 1.09000 * 109.58396 * 353.37870 * 8 7 5 36 36 H 1.08999 * 109.58454 * 113.80160 * 8 7 5 37 37 H 1.09002 * 109.49624 * 65.31538 * 9 8 7 38 38 H 1.08997 * 109.50239 * 185.37868 * 9 8 7 39 39 H 1.09004 * 109.45772 * 181.38293 * 10 9 8 40 40 H 1.09001 * 109.46252 * 301.35882 * 10 9 8 41 41 H 1.08989 * 109.50183 * 58.58150 * 11 10 9 42 42 H 1.09003 * 109.49658 * 178.65675 * 11 10 9 43 43 H 1.09004 * 109.46868 * 301.22896 * 14 12 7 44 44 H 1.08993 * 109.47370 * 61.23288 * 14 12 7 45 45 H 1.09004 * 109.46680 * 294.73988 * 15 14 12 46 46 H 1.08997 * 109.46726 * 54.73787 * 15 14 12 47 47 H 0.96997 * 120.00401 * 359.97438 * 16 15 14 48 48 H 0.96996 * 120.00136 * 180.02562 * 20 19 17 49 49 H 1.07997 * 125.89037 * 359.70113 * 26 25 2 50 50 H 1.07993 * 126.29303 * 179.97438 * 27 26 25 51 51 H 1.08004 * 126.28983 * 180.02562 * 28 27 26 52 52 H 1.07997 * 125.89700 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6414 0.0571 -2.4766 6 8 1.0110 1.0870 -2.3633 7 7 1.9845 -0.3919 -3.7001 8 6 2.8417 -1.5758 -3.8500 9 6 4.0329 -1.2123 -4.7419 10 6 3.5187 -0.6373 -6.0637 11 6 2.7145 0.6356 -5.7897 12 6 1.5036 0.2898 -4.9097 13 1 0.8277 -0.3684 -5.4556 14 6 0.7690 1.5732 -4.5174 15 6 0.2428 2.2649 -5.7766 16 7 -0.5667 3.4246 -5.3946 17 6 -1.1455 4.2036 -6.3607 18 1 -1.0055 3.9629 -7.4041 19 6 -1.9121 5.3029 -5.9989 20 7 -2.0831 5.5961 -4.7272 21 14 -2.7022 6.3652 -7.3167 22 1 -3.6259 5.5365 -8.1325 23 1 -3.4630 7.4668 -6.6741 24 1 -1.6465 6.9363 -8.1909 25 7 2.0184 -0.6905 1.1962 26 6 2.8055 -0.1415 2.1646 27 6 3.0437 -1.0843 3.0990 28 6 2.3789 -2.2582 2.6927 29 6 1.7602 -1.9883 1.5253 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 3.1264 -0.7994 -1.2056 34 1 1.6054 -1.7197 -1.2951 35 1 3.2014 -1.8926 -2.8710 36 1 2.2726 -2.3829 -4.3113 37 1 4.6513 -0.4694 -4.2381 38 1 4.6256 -2.1055 -4.9393 39 1 4.3640 -0.4007 -6.7100 40 1 2.8801 -1.3714 -6.5551 41 1 3.3452 1.3610 -5.2760 42 1 2.3687 1.0577 -6.7333 43 1 -0.0665 1.3276 -3.8617 44 1 1.4557 2.2403 -3.9965 45 1 1.0829 2.5937 -6.3884 46 1 -0.3697 1.5659 -6.3460 47 1 -0.6927 3.6407 -4.4575 48 1 -2.6190 6.3639 -4.4743 49 1 3.1779 0.8721 2.1787 50 1 3.6354 -0.9620 3.9941 51 1 2.3670 -3.2010 3.2194 52 1 1.1633 -2.6805 0.9502 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715449155.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:27:08 Heat of formation + Delta-G solvation = 33.829352 kcal Electronic energy + Delta-G solvation = -29486.108511 eV Core-core repulsion = 25680.099395 eV Total energy + Delta-G solvation = -3806.009116 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.45574 -40.59300 -37.76101 -35.50085 -34.89838 -33.14848 -32.77923 -30.67989 -29.89789 -28.86621 -28.29613 -27.71858 -25.00172 -24.12707 -23.17401 -22.18661 -21.09681 -20.71996 -20.56530 -19.68626 -18.86038 -17.75212 -16.99604 -16.31508 -16.13313 -15.91632 -14.89577 -14.80362 -14.65644 -14.59056 -14.28949 -13.88668 -13.84338 -13.70184 -13.37996 -13.20302 -13.04136 -13.00385 -12.74927 -12.67498 -12.40030 -12.19626 -12.12631 -11.87005 -11.64206 -11.40354 -11.30965 -11.21634 -11.09980 -10.94582 -10.81551 -10.78272 -10.47136 -10.37834 -9.99486 -9.60777 -8.87880 -8.78432 -8.73025 -8.54336 -8.26845 -6.80982 -5.67059 -2.95237 2.16889 2.52356 2.59074 2.95379 3.04245 3.48421 3.52071 3.53810 4.24363 4.30512 4.50030 4.54723 4.65303 4.66470 4.75304 4.89075 4.91352 4.95496 5.11319 5.12332 5.14711 5.18498 5.24739 5.31061 5.43701 5.49946 5.51217 5.55340 5.63992 5.68323 5.71996 5.73489 5.76817 5.90766 5.94151 6.09063 6.13606 6.17544 6.20683 6.22877 6.34598 6.37253 6.54692 6.64167 6.88989 7.05744 7.14045 7.14863 7.27966 7.34734 7.76178 8.14486 8.52079 9.62481 10.24286 10.59062 11.55814 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.011414 B = 0.002851 C = 0.002351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2452.457529 B = 9819.183363 C =11907.586884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.148 3.852 3 H 0.108 0.892 4 C -0.151 4.151 5 C 0.514 3.486 6 O -0.510 6.510 7 N -0.608 5.608 8 C 0.106 3.894 9 C -0.135 4.135 10 C -0.120 4.120 11 C -0.133 4.133 12 C 0.152 3.848 13 H 0.072 0.928 14 C -0.112 4.112 15 C 0.147 3.853 16 N -0.731 5.731 17 C -0.238 4.238 18 H 0.068 0.932 19 C -0.016 4.016 20 N -0.933 5.933 21 Si 0.906 3.094 22 H -0.287 1.287 23 H -0.291 1.291 24 H -0.287 1.287 25 N -0.441 5.441 26 C -0.013 4.013 27 C -0.207 4.207 28 C -0.206 4.206 29 C -0.015 4.015 30 H 0.099 0.901 31 H 0.055 0.945 32 H 0.062 0.938 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.082 0.918 36 H 0.069 0.931 37 H 0.066 0.934 38 H 0.073 0.927 39 H 0.064 0.936 40 H 0.063 0.937 41 H 0.067 0.933 42 H 0.081 0.919 43 H 0.087 0.913 44 H 0.071 0.929 45 H 0.015 0.985 46 H 0.011 0.989 47 H 0.385 0.615 48 H 0.255 0.745 49 H 0.159 0.841 50 H 0.132 0.868 51 H 0.131 0.869 52 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.400 -20.903 8.726 26.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.046 3.954 3 H 0.126 0.874 4 C -0.192 4.192 5 C 0.301 3.699 6 O -0.386 6.386 7 N -0.342 5.342 8 C -0.017 4.017 9 C -0.173 4.173 10 C -0.158 4.158 11 C -0.171 4.171 12 C 0.049 3.951 13 H 0.090 0.910 14 C -0.149 4.149 15 C 0.019 3.981 16 N -0.375 5.375 17 C -0.369 4.369 18 H 0.086 0.914 19 C -0.212 4.212 20 N -0.582 5.582 21 Si 0.737 3.263 22 H -0.214 1.214 23 H -0.217 1.217 24 H -0.214 1.214 25 N -0.116 5.116 26 C -0.143 4.143 27 C -0.231 4.231 28 C -0.230 4.230 29 C -0.145 4.145 30 H 0.118 0.882 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.115 0.885 34 H 0.115 0.885 35 H 0.100 0.900 36 H 0.088 0.912 37 H 0.085 0.915 38 H 0.092 0.908 39 H 0.083 0.917 40 H 0.082 0.918 41 H 0.086 0.914 42 H 0.100 0.900 43 H 0.105 0.895 44 H 0.090 0.910 45 H 0.032 0.968 46 H 0.029 0.971 47 H 0.219 0.781 48 H 0.064 0.936 49 H 0.176 0.824 50 H 0.150 0.850 51 H 0.149 0.851 52 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 13.872 -20.090 8.325 25.794 hybrid contribution -0.334 0.508 -0.446 0.754 sum 13.537 -19.582 7.879 25.076 Atomic orbital electron populations 1.22296 0.92492 1.02665 1.04979 1.21143 0.96274 0.96683 0.81340 0.87422 1.22079 1.03323 1.00813 0.92986 1.20239 0.79926 0.85712 0.84043 1.90878 1.38996 1.23097 1.85605 1.48160 1.50387 1.29820 1.05871 1.21747 0.91647 0.87545 1.00740 1.21913 0.97257 1.01453 0.96681 1.21540 0.99930 0.97706 0.96635 1.22132 0.96838 0.97399 1.00761 1.21463 0.94712 0.94774 0.84117 0.91009 1.22232 1.00935 0.93906 0.97873 1.20800 0.93337 0.89641 0.94321 1.42336 1.59170 1.29202 1.06753 1.19195 1.23720 1.05277 0.88721 0.91399 1.24748 1.01266 0.99127 0.96051 1.69668 1.44411 1.29785 1.14290 0.86277 0.79095 0.80101 0.80778 1.21352 1.21710 1.21351 1.44402 1.38958 1.10155 1.18123 1.21884 1.01087 0.99798 0.91543 1.20867 1.07064 0.93995 1.01205 1.20863 1.04885 0.99318 0.97965 1.21710 1.06702 0.86340 0.99744 0.88201 0.92553 0.91855 0.88518 0.88485 0.90011 0.91244 0.91496 0.90850 0.91697 0.91793 0.91428 0.90000 0.89489 0.90995 0.96770 0.97103 0.78097 0.93552 0.82387 0.85030 0.85090 0.82692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.84 8.98 37.16 0.33 -1.51 16 2 C 0.15 1.50 2.67 -67.93 -0.18 1.32 16 3 H 0.11 1.20 7.88 -51.93 -0.41 0.79 16 4 C -0.15 -1.33 3.57 -27.88 -0.10 -1.43 16 5 C 0.51 6.21 7.33 -10.99 -0.08 6.13 16 6 O -0.51 -8.20 9.37 5.55 0.05 -8.14 16 7 N -0.61 -6.67 2.97 -164.96 -0.49 -7.16 16 8 C 0.11 0.79 6.32 -3.71 -0.02 0.76 16 9 C -0.13 -0.97 6.08 -26.61 -0.16 -1.13 16 10 C -0.12 -1.03 5.88 -26.69 -0.16 -1.19 16 11 C -0.13 -1.55 4.94 -26.38 -0.13 -1.68 16 12 C 0.15 2.00 3.01 -67.37 -0.20 1.80 16 13 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 14 C -0.11 -1.99 3.24 -26.73 -0.09 -2.08 16 15 C 0.15 3.13 5.82 -4.04 -0.02 3.11 16 16 N -0.73 -19.83 5.60 -59.91 -0.34 -20.17 16 17 C -0.24 -6.98 9.99 -15.06 -0.15 -7.13 16 18 H 0.07 1.92 7.83 -52.49 -0.41 1.50 16 19 C -0.02 -0.48 5.50 -17.43 -0.10 -0.58 16 20 N -0.93 -29.47 13.06 55.49 0.72 -28.75 16 21 Si 0.91 23.12 29.55 -169.99 -5.02 18.09 16 22 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 23 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 24 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 25 N -0.44 -4.46 2.62 -110.02 -0.29 -4.74 16 26 C -0.01 -0.13 11.39 -16.75 -0.19 -0.32 16 27 C -0.21 -2.12 10.86 -39.78 -0.43 -2.55 16 28 C -0.21 -2.06 10.86 -39.78 -0.43 -2.49 16 29 C -0.01 -0.14 10.45 -16.75 -0.18 -0.32 16 30 H 0.10 1.34 5.95 -51.93 -0.31 1.03 16 31 H 0.06 0.55 7.92 -51.93 -0.41 0.14 16 32 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.10 0.75 7.48 -51.93 -0.39 0.37 16 34 H 0.10 0.70 8.03 -51.93 -0.42 0.29 16 35 H 0.08 0.47 5.96 -51.93 -0.31 0.16 16 36 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.07 0.86 8.14 -51.94 -0.42 0.44 16 42 H 0.08 1.01 6.93 -51.93 -0.36 0.65 16 43 H 0.09 1.73 6.35 -51.93 -0.33 1.40 16 44 H 0.07 1.41 7.12 -51.93 -0.37 1.04 16 45 H 0.01 0.30 6.91 -51.93 -0.36 -0.06 16 46 H 0.01 0.24 8.14 -51.93 -0.42 -0.19 16 47 H 0.39 11.17 7.67 -40.82 -0.31 10.86 16 48 H 0.25 7.76 8.31 -40.82 -0.34 7.42 16 49 H 0.16 1.34 8.06 -52.49 -0.42 0.92 16 50 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 51 H 0.13 1.09 8.06 -52.48 -0.42 0.67 16 52 H 0.16 1.17 8.06 -52.49 -0.42 0.75 16 LS Contribution 401.21 15.07 6.05 6.05 Total: -1.00 -34.07 401.21 -10.62 -44.69 By element: Atomic # 1 Polarization: 18.44 SS G_CDS: -9.02 Total: 9.43 kcal Atomic # 6 Polarization: -7.00 SS G_CDS: -2.29 Total: -9.29 kcal Atomic # 7 Polarization: -60.43 SS G_CDS: -0.39 Total: -60.82 kcal Atomic # 8 Polarization: -8.20 SS G_CDS: 0.05 Total: -8.14 kcal Atomic # 14 Polarization: 23.12 SS G_CDS: -5.02 Total: 18.09 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -34.07 -10.62 -44.69 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715449155.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.517 kcal (2) G-P(sol) polarization free energy of solvation -34.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.688 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds