Wall clock time and date at job start Tue Mar 31 2020 17:27:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.46970 * 2 1 4 4 C 1.53002 * 109.47204 * 240.00092 * 2 1 3 5 5 C 1.50697 * 109.47104 * 65.00104 * 4 2 1 6 6 O 1.21284 * 120.00037 * 359.97438 * 5 4 2 7 7 N 1.34776 * 119.99907 * 180.02562 * 5 4 2 8 8 C 1.46930 * 120.63108 * 354.85553 * 7 5 4 9 9 C 1.53190 * 108.77589 * 233.58877 * 8 7 5 10 10 C 1.53039 * 109.31371 * 305.36527 * 9 8 7 11 11 C 1.53045 * 109.53775 * 61.36967 * 10 9 8 12 12 C 1.46932 * 120.62952 * 174.58211 * 7 5 4 13 13 H 1.09000 * 109.58071 * 246.19460 * 12 7 5 14 14 C 1.52999 * 109.58626 * 6.62289 * 12 7 5 15 15 C 1.53005 * 109.46908 * 181.23354 * 14 12 7 16 16 N 1.46496 * 109.46902 * 174.73941 * 15 14 12 17 17 C 1.36936 * 119.99558 * 179.97438 * 16 15 14 18 18 H 1.07992 * 120.00499 * 0.02562 * 17 16 15 19 19 C 1.38817 * 119.99924 * 180.02562 * 17 16 15 20 20 N 1.31622 * 119.99931 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00218 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.47015 * 60.00090 * 21 19 17 23 23 H 1.48502 * 109.47184 * 179.97438 * 21 19 17 24 24 H 1.48494 * 109.47024 * 299.99785 * 21 19 17 25 25 N 1.46500 * 109.47564 * 119.99674 * 2 1 3 26 26 C 1.36337 * 125.63877 * 240.00777 * 25 2 1 27 27 C 1.34851 * 108.21895 * 179.97438 * 26 25 2 28 28 C 1.40893 * 107.41527 * 359.97438 * 27 26 25 29 29 C 1.34845 * 107.42118 * 0.02562 * 28 27 26 30 30 H 1.08998 * 109.47071 * 60.00122 * 1 2 3 31 31 H 1.09005 * 109.46970 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47536 * 299.99850 * 1 2 3 33 33 H 1.09003 * 109.47023 * 184.99571 * 4 2 1 34 34 H 1.08991 * 109.46874 * 304.99710 * 4 2 1 35 35 H 1.09000 * 109.58396 * 353.37870 * 8 7 5 36 36 H 1.08999 * 109.58454 * 113.80160 * 8 7 5 37 37 H 1.09002 * 109.49624 * 65.31538 * 9 8 7 38 38 H 1.08997 * 109.50239 * 185.37868 * 9 8 7 39 39 H 1.09004 * 109.45772 * 181.38293 * 10 9 8 40 40 H 1.09001 * 109.46252 * 301.35882 * 10 9 8 41 41 H 1.08989 * 109.50183 * 58.58150 * 11 10 9 42 42 H 1.09003 * 109.49658 * 178.65675 * 11 10 9 43 43 H 1.09004 * 109.46868 * 301.22896 * 14 12 7 44 44 H 1.08993 * 109.47370 * 61.23288 * 14 12 7 45 45 H 1.09004 * 109.46680 * 294.73988 * 15 14 12 46 46 H 1.08997 * 109.46726 * 54.73787 * 15 14 12 47 47 H 0.96997 * 120.00401 * 359.97438 * 16 15 14 48 48 H 0.96996 * 120.00136 * 180.02562 * 20 19 17 49 49 H 1.07997 * 125.89037 * 359.70113 * 26 25 2 50 50 H 1.07993 * 126.29303 * 179.97438 * 27 26 25 51 51 H 1.08004 * 126.28983 * 180.02562 * 28 27 26 52 52 H 1.07997 * 125.89700 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6414 0.0571 -2.4766 6 8 1.0110 1.0870 -2.3633 7 7 1.9845 -0.3919 -3.7001 8 6 2.8417 -1.5758 -3.8500 9 6 4.0329 -1.2123 -4.7419 10 6 3.5187 -0.6373 -6.0637 11 6 2.7145 0.6356 -5.7897 12 6 1.5036 0.2898 -4.9097 13 1 0.8277 -0.3684 -5.4556 14 6 0.7690 1.5732 -4.5174 15 6 0.2428 2.2649 -5.7766 16 7 -0.5667 3.4246 -5.3946 17 6 -1.1455 4.2036 -6.3607 18 1 -1.0055 3.9629 -7.4041 19 6 -1.9121 5.3029 -5.9989 20 7 -2.0831 5.5961 -4.7272 21 14 -2.7022 6.3652 -7.3167 22 1 -3.6259 5.5365 -8.1325 23 1 -3.4630 7.4668 -6.6741 24 1 -1.6465 6.9363 -8.1909 25 7 2.0184 -0.6905 1.1962 26 6 2.8055 -0.1415 2.1646 27 6 3.0437 -1.0843 3.0990 28 6 2.3789 -2.2582 2.6927 29 6 1.7602 -1.9883 1.5253 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 3.1264 -0.7994 -1.2056 34 1 1.6054 -1.7197 -1.2951 35 1 3.2014 -1.8926 -2.8710 36 1 2.2726 -2.3829 -4.3113 37 1 4.6513 -0.4694 -4.2381 38 1 4.6256 -2.1055 -4.9393 39 1 4.3640 -0.4007 -6.7100 40 1 2.8801 -1.3714 -6.5551 41 1 3.3452 1.3610 -5.2760 42 1 2.3687 1.0577 -6.7333 43 1 -0.0665 1.3276 -3.8617 44 1 1.4557 2.2403 -3.9965 45 1 1.0829 2.5937 -6.3884 46 1 -0.3697 1.5659 -6.3460 47 1 -0.6927 3.6407 -4.4575 48 1 -2.6190 6.3639 -4.4743 49 1 3.1779 0.8721 2.1787 50 1 3.6354 -0.9620 3.9941 51 1 2.3670 -3.2010 3.2194 52 1 1.1633 -2.6805 0.9502 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715449155.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:27:07 Heat of formation + Delta-G solvation = 14.507441 kcal Electronic energy + Delta-G solvation = -29486.946372 eV Core-core repulsion = 25680.099395 eV Total energy + Delta-G solvation = -3806.846977 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.24699 -41.51054 -38.68770 -37.01182 -36.03896 -34.52578 -33.86775 -32.44811 -30.68434 -29.60266 -29.32147 -29.00918 -26.31231 -25.34003 -24.40500 -23.44172 -22.15604 -21.86852 -21.32419 -20.46472 -19.71951 -19.23267 -18.44980 -17.24717 -17.16423 -16.83729 -16.58968 -15.83194 -15.64939 -15.52634 -15.41236 -15.20995 -14.90508 -14.69251 -14.61134 -14.45457 -14.34517 -13.89909 -13.78705 -13.58474 -13.33686 -13.11714 -12.93364 -12.91980 -12.82802 -12.77622 -12.61864 -12.48603 -12.23260 -12.17220 -12.12368 -11.91216 -11.87286 -11.78044 -11.52567 -11.37943 -10.92938 -10.02810 -9.53105 -9.47813 -9.02314 -9.01582 -7.96123 -5.26610 1.41364 1.43660 1.48600 1.54803 1.60877 1.74867 2.20467 2.22770 2.54545 3.36028 3.44687 3.46502 3.73069 3.81869 3.86101 3.95552 4.08863 4.12069 4.13416 4.20665 4.26823 4.42565 4.43492 4.44991 4.46824 4.51556 4.58152 4.67483 4.71589 4.73673 4.76819 4.81530 4.85719 4.91226 4.93907 4.97484 5.09584 5.16631 5.20528 5.23273 5.39772 5.40462 5.45112 5.48665 5.48921 5.51184 5.71343 6.15389 6.25035 6.39462 6.45468 6.53537 7.22046 7.29858 8.07550 8.31258 9.27739 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.011414 B = 0.002851 C = 0.002351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2452.457529 B = 9819.183363 C =11907.586884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.153 3.847 3 H 0.089 0.911 4 C -0.135 4.135 5 C 0.507 3.493 6 O -0.560 6.560 7 N -0.606 5.606 8 C 0.101 3.899 9 C -0.131 4.131 10 C -0.116 4.116 11 C -0.130 4.130 12 C 0.158 3.842 13 H 0.081 0.919 14 C -0.089 4.089 15 C 0.146 3.854 16 N -0.748 5.748 17 C -0.249 4.249 18 H 0.078 0.922 19 C -0.081 4.081 20 N -0.973 5.973 21 Si 0.980 3.020 22 H -0.275 1.275 23 H -0.294 1.294 24 H -0.275 1.275 25 N -0.443 5.443 26 C -0.032 4.032 27 C -0.218 4.218 28 C -0.220 4.220 29 C -0.017 4.017 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.052 0.948 33 H 0.115 0.885 34 H 0.124 0.876 35 H 0.106 0.894 36 H 0.088 0.912 37 H 0.057 0.943 38 H 0.103 0.897 39 H 0.073 0.927 40 H 0.075 0.925 41 H 0.050 0.950 42 H 0.070 0.930 43 H 0.063 0.937 44 H 0.046 0.954 45 H 0.021 0.979 46 H 0.018 0.982 47 H 0.370 0.630 48 H 0.251 0.749 49 H 0.166 0.834 50 H 0.142 0.858 51 H 0.146 0.854 52 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.685 -23.760 7.704 29.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.051 3.949 3 H 0.108 0.892 4 C -0.175 4.175 5 C 0.295 3.705 6 O -0.439 6.439 7 N -0.339 5.339 8 C -0.021 4.021 9 C -0.169 4.169 10 C -0.153 4.153 11 C -0.168 4.168 12 C 0.054 3.946 13 H 0.099 0.901 14 C -0.127 4.127 15 C 0.020 3.980 16 N -0.390 5.390 17 C -0.381 4.381 18 H 0.096 0.904 19 C -0.273 4.273 20 N -0.623 5.623 21 Si 0.808 3.192 22 H -0.201 1.201 23 H -0.220 1.220 24 H -0.201 1.201 25 N -0.118 5.118 26 C -0.162 4.162 27 C -0.242 4.242 28 C -0.244 4.244 29 C -0.147 4.147 30 H 0.091 0.909 31 H 0.092 0.908 32 H 0.072 0.928 33 H 0.133 0.867 34 H 0.142 0.858 35 H 0.124 0.876 36 H 0.106 0.894 37 H 0.075 0.925 38 H 0.121 0.879 39 H 0.092 0.908 40 H 0.094 0.906 41 H 0.068 0.932 42 H 0.089 0.911 43 H 0.081 0.919 44 H 0.064 0.936 45 H 0.039 0.961 46 H 0.036 0.964 47 H 0.201 0.799 48 H 0.060 0.940 49 H 0.184 0.816 50 H 0.160 0.840 51 H 0.163 0.837 52 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 15.209 -23.016 7.270 28.529 hybrid contribution -0.696 1.353 -0.098 1.525 sum 14.513 -21.663 7.172 27.043 Atomic orbital electron populations 1.22185 0.93400 1.03130 1.03099 1.20964 0.95458 0.96240 0.82286 0.89238 1.21975 1.04411 1.00949 0.90170 1.20844 0.79111 0.85324 0.85209 1.90877 1.41295 1.25434 1.86306 1.48244 1.50427 1.30583 1.04656 1.22096 0.91296 0.86168 1.02508 1.21919 0.97199 1.02341 0.95477 1.21525 0.99867 0.96031 0.97908 1.22072 0.96292 0.98992 0.99476 1.21236 0.95225 0.92689 0.85444 0.90088 1.21914 0.99903 0.95622 0.95219 1.20991 0.92740 0.88213 0.96101 1.42619 1.59945 1.30705 1.05739 1.19664 1.23362 1.05534 0.89535 0.90445 1.25703 1.02353 1.00813 0.98407 1.69861 1.45516 1.30372 1.16595 0.85117 0.78201 0.77935 0.77942 1.20064 1.22038 1.20115 1.44386 1.39050 1.10447 1.17946 1.22170 1.01628 1.00489 0.91888 1.21148 1.07248 0.94264 1.01578 1.21163 1.05013 0.99871 0.98391 1.22130 1.06460 0.86199 0.99881 0.90921 0.90834 0.92844 0.86666 0.85831 0.87610 0.89369 0.92450 0.87903 0.90812 0.90610 0.93154 0.91095 0.91884 0.93556 0.96148 0.96449 0.79869 0.93997 0.81618 0.84013 0.83657 0.80416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.61 8.98 71.98 0.65 -2.97 16 2 C 0.15 3.06 2.67 44.99 0.12 3.18 16 3 H 0.09 2.11 7.88 -2.38 -0.02 2.09 16 4 C -0.13 -2.11 3.57 29.85 0.11 -2.01 16 5 C 0.51 12.10 7.33 87.66 0.64 12.74 16 6 O -0.56 -19.12 9.37 -3.04 -0.03 -19.15 16 7 N -0.61 -12.43 2.97 -794.19 -2.36 -14.78 16 8 C 0.10 1.11 6.32 86.36 0.55 1.65 16 9 C -0.13 -1.40 6.08 30.67 0.19 -1.22 16 10 C -0.12 -1.66 5.88 30.62 0.18 -1.48 16 11 C -0.13 -2.94 4.94 30.82 0.15 -2.79 16 12 C 0.16 4.09 3.01 45.12 0.14 4.22 16 13 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 14 C -0.09 -3.32 3.24 30.60 0.10 -3.22 16 15 C 0.15 6.42 5.82 86.38 0.50 6.92 16 16 N -0.75 -42.19 5.60 -343.45 -1.92 -44.11 16 17 C -0.25 -14.90 9.99 84.04 0.84 -14.06 16 18 H 0.08 4.37 7.83 -2.91 -0.02 4.35 16 19 C -0.08 -4.92 5.50 84.86 0.47 -4.46 16 20 N -0.97 -63.40 13.06 21.65 0.28 -63.12 16 21 Si 0.98 48.06 29.55 68.60 2.03 50.09 16 22 H -0.27 -12.84 7.11 99.48 0.71 -12.13 16 23 H -0.29 -14.45 7.11 99.48 0.71 -13.75 16 24 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 25 N -0.44 -8.41 2.62 -502.00 -1.31 -9.72 16 26 C -0.03 -0.64 11.39 83.21 0.95 0.31 16 27 C -0.22 -4.22 10.86 22.14 0.24 -3.98 16 28 C -0.22 -3.99 10.86 22.14 0.24 -3.75 16 29 C -0.02 -0.29 10.45 83.21 0.87 0.58 16 30 H 0.07 2.09 5.95 -2.39 -0.01 2.07 16 31 H 0.07 1.35 7.92 -2.38 -0.02 1.33 16 32 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.12 1.44 7.48 -2.39 -0.02 1.42 16 34 H 0.12 1.33 8.03 -2.39 -0.02 1.31 16 35 H 0.11 0.70 5.96 -2.39 -0.01 0.69 16 36 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 37 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 38 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 39 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 40 H 0.08 0.94 8.14 -2.39 -0.02 0.93 16 41 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 42 H 0.07 1.73 6.93 -2.39 -0.02 1.71 16 43 H 0.06 2.68 6.35 -2.39 -0.02 2.66 16 44 H 0.05 1.95 7.12 -2.39 -0.02 1.93 16 45 H 0.02 0.88 6.91 -2.38 -0.02 0.86 16 46 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 47 H 0.37 22.72 7.67 -92.71 -0.71 22.01 16 48 H 0.25 15.77 8.31 -92.71 -0.77 15.00 16 49 H 0.17 2.84 8.06 -2.91 -0.02 2.81 16 50 H 0.14 2.32 8.06 -2.91 -0.02 2.29 16 51 H 0.15 2.11 8.06 -2.91 -0.02 2.09 16 52 H 0.18 2.07 8.06 -2.91 -0.02 2.04 16 Total: -1.00 -77.17 401.21 3.79 -73.38 By element: Atomic # 1 Polarization: 37.56 SS G_CDS: 0.18 Total: 37.74 kcal Atomic # 6 Polarization: -17.24 SS G_CDS: 6.92 Total: -10.32 kcal Atomic # 7 Polarization: -126.43 SS G_CDS: -5.31 Total: -131.74 kcal Atomic # 8 Polarization: -19.12 SS G_CDS: -0.03 Total: -19.15 kcal Atomic # 14 Polarization: 48.06 SS G_CDS: 2.03 Total: 50.09 kcal Total: -77.17 3.79 -73.38 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715449155.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.890 kcal (2) G-P(sol) polarization free energy of solvation -77.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.382 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds