Wall clock time and date at job start Tue Mar 31 2020 17:27:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.47215 * 2 1 4 4 C 1.53001 * 109.47003 * 119.99621 * 2 1 3 5 5 C 1.50696 * 109.47499 * 295.00040 * 4 2 1 6 6 O 1.21287 * 120.00011 * 0.02562 * 5 4 2 7 7 N 1.34772 * 120.00088 * 179.97438 * 5 4 2 8 8 C 1.46926 * 120.63425 * 354.87189 * 7 5 4 9 9 C 1.53198 * 108.77392 * 233.33463 * 8 7 5 10 10 C 1.53032 * 109.30963 * 305.35723 * 9 8 7 11 11 C 1.53046 * 109.53948 * 61.36948 * 10 9 8 12 12 C 1.46933 * 120.63088 * 174.58546 * 7 5 4 13 13 H 1.08996 * 109.58832 * 246.46126 * 12 7 5 14 14 C 1.53001 * 109.58287 * 6.88298 * 12 7 5 15 15 C 1.52998 * 109.46938 * 181.11869 * 14 12 7 16 16 N 1.46505 * 109.47241 * 174.73484 * 15 14 12 17 17 C 1.36935 * 120.00041 * 179.97438 * 16 15 14 18 18 H 1.08002 * 119.99997 * 359.97438 * 17 16 15 19 19 C 1.38810 * 120.00278 * 180.02562 * 17 16 15 20 20 N 1.31615 * 120.00609 * 180.02562 * 19 17 16 21 21 Si 1.86802 * 119.99467 * 0.02562 * 19 17 16 22 22 H 1.48493 * 109.47711 * 89.99943 * 21 19 17 23 23 H 1.48506 * 109.46737 * 209.99737 * 21 19 17 24 24 H 1.48501 * 109.47136 * 329.99435 * 21 19 17 25 25 N 1.46498 * 109.47159 * 239.99674 * 2 1 3 26 26 C 1.36339 * 125.63583 * 299.69826 * 25 2 1 27 27 C 1.34853 * 108.21777 * 179.83263 * 26 25 2 28 28 C 1.40891 * 107.41445 * 0.41781 * 27 26 25 29 29 C 1.34844 * 107.41803 * 359.73999 * 28 27 26 30 30 H 1.09002 * 109.46895 * 300.00640 * 1 2 3 31 31 H 1.09000 * 109.47251 * 59.99973 * 1 2 3 32 32 H 1.09004 * 109.47281 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.47056 * 175.00029 * 4 2 1 34 34 H 1.09000 * 109.47097 * 55.00135 * 4 2 1 35 35 H 1.09004 * 109.57976 * 353.11906 * 8 7 5 36 36 H 1.08992 * 109.59249 * 113.54093 * 8 7 5 37 37 H 1.09000 * 109.49613 * 65.31365 * 9 8 7 38 38 H 1.09004 * 109.49043 * 185.37528 * 9 8 7 39 39 H 1.09003 * 109.45739 * 181.38550 * 10 9 8 40 40 H 1.08998 * 109.46614 * 301.36516 * 10 9 8 41 41 H 1.09002 * 109.49275 * 58.58448 * 11 10 9 42 42 H 1.09003 * 109.49967 * 178.64549 * 11 10 9 43 43 H 1.08994 * 109.47250 * 301.11813 * 14 12 7 44 44 H 1.08999 * 109.47123 * 61.12036 * 14 12 7 45 45 H 1.09001 * 109.47282 * 294.73445 * 15 14 12 46 46 H 1.09001 * 109.47432 * 54.73724 * 15 14 12 47 47 H 0.96993 * 119.99861 * 0.02562 * 16 15 14 48 48 H 0.96994 * 120.00071 * 180.02562 * 20 19 17 49 49 H 1.08001 * 125.89371 * 359.95123 * 26 25 2 50 50 H 1.08004 * 126.29357 * 180.16335 * 27 26 25 51 51 H 1.08004 * 126.29127 * 179.73876 * 28 27 26 52 52 H 1.08003 * 125.89192 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6413 0.0571 2.4766 6 8 1.0109 1.0870 2.3633 7 7 1.9844 -0.3918 3.7002 8 6 2.6482 -1.6927 3.8614 9 6 1.8580 -2.5271 4.8744 10 6 1.7057 -1.7340 6.1743 11 6 0.9279 -0.4449 5.8991 12 6 1.7075 0.4132 4.8978 13 1 2.6470 0.7358 5.3465 14 6 0.8734 1.6364 4.5119 15 6 0.6101 2.4872 5.7559 16 7 -0.0793 3.7201 5.3674 17 6 -0.4211 4.6427 6.3199 18 1 -0.1827 4.4613 7.3575 19 6 -1.0748 5.8106 5.9519 20 7 -1.4029 6.6977 6.8673 21 14 -1.4890 6.1234 4.1575 22 1 -2.8335 5.5700 3.8559 23 1 -1.4855 7.5853 3.8962 24 1 -0.4770 5.4638 3.2937 25 7 2.0183 -0.6907 -1.1961 26 6 1.7655 -1.9902 -1.5218 27 6 2.3799 -2.2588 -2.6918 28 6 3.0441 -1.0847 -3.0986 29 6 2.8055 -0.1418 -2.1646 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 3.1263 -0.7994 1.2057 34 1 1.6054 -1.7197 1.2953 35 1 2.6746 -2.2106 2.9027 36 1 3.6643 -1.5419 4.2256 37 1 0.8720 -2.7538 4.4688 38 1 2.3913 -3.4564 5.0750 39 1 1.1650 -2.3352 6.9053 40 1 2.6920 -1.4860 6.5662 41 1 -0.0493 -0.6913 5.4839 42 1 0.7990 0.1079 6.8297 43 1 1.4160 2.2284 3.7750 44 1 -0.0760 1.3096 4.0877 45 1 -0.0123 1.9274 6.4540 46 1 1.5580 2.7360 6.2332 47 1 -0.2944 3.8825 4.4357 48 1 -1.8600 7.5136 6.6101 49 1 1.1736 -2.6843 -0.9436 50 1 2.3687 -3.2019 -3.2181 51 1 3.6356 -0.9623 -3.9939 52 1 3.1746 0.8731 -2.1807 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715449157.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:27:12 Heat of formation + Delta-G solvation = 37.266354 kcal Electronic energy + Delta-G solvation = -29612.962233 eV Core-core repulsion = 25807.102157 eV Total energy + Delta-G solvation = -3805.860076 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.53618 -40.69458 -37.86130 -35.65381 -35.05481 -33.23563 -32.83625 -30.99726 -29.98899 -28.93477 -28.42723 -28.05075 -25.12054 -24.20924 -23.17096 -21.99396 -21.15751 -20.83447 -20.64709 -19.74717 -18.97103 -17.89315 -17.40832 -16.50657 -16.29538 -15.80740 -14.97171 -14.92878 -14.69017 -14.68655 -14.40180 -14.08145 -13.89123 -13.70277 -13.55043 -13.30146 -13.11254 -12.98505 -12.81492 -12.71104 -12.46601 -12.30143 -12.26093 -12.06223 -11.66103 -11.62964 -11.45039 -11.36281 -11.22258 -11.08851 -10.90548 -10.84298 -10.50266 -10.37235 -10.08109 -9.52793 -9.01880 -8.82199 -8.79828 -8.62669 -8.33621 -7.13455 -5.70458 -3.04455 2.09575 2.41220 2.50790 2.89032 2.95180 3.45004 3.51159 3.51541 4.15857 4.22159 4.38353 4.48806 4.59602 4.66896 4.68013 4.79902 4.83535 4.88229 5.03706 5.04720 5.06437 5.09353 5.14965 5.22396 5.35724 5.39946 5.43526 5.49169 5.58030 5.58778 5.63971 5.65469 5.67708 5.81048 5.86267 5.95718 6.00764 6.06502 6.10800 6.11002 6.15728 6.24886 6.38103 6.52968 6.82270 6.92054 6.99122 7.07528 7.20514 7.24337 8.02954 8.07068 8.49572 9.30043 10.03167 10.24441 11.48185 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.010286 B = 0.003261 C = 0.002558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2721.591764 B = 8583.317504 C =10942.314179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.148 3.852 3 H 0.107 0.893 4 C -0.152 4.152 5 C 0.516 3.484 6 O -0.516 6.516 7 N -0.607 5.607 8 C 0.106 3.894 9 C -0.135 4.135 10 C -0.121 4.121 11 C -0.134 4.134 12 C 0.152 3.848 13 H 0.074 0.926 14 C -0.117 4.117 15 C 0.151 3.849 16 N -0.755 5.755 17 C -0.241 4.241 18 H 0.089 0.911 19 C 0.002 3.998 20 N -0.937 5.937 21 Si 0.884 3.116 22 H -0.285 1.285 23 H -0.292 1.292 24 H -0.275 1.275 25 N -0.441 5.441 26 C -0.015 4.015 27 C -0.205 4.205 28 C -0.206 4.206 29 C -0.013 4.013 30 H 0.098 0.902 31 H 0.062 0.938 32 H 0.056 0.944 33 H 0.098 0.902 34 H 0.097 0.903 35 H 0.082 0.918 36 H 0.070 0.930 37 H 0.066 0.934 38 H 0.074 0.926 39 H 0.065 0.935 40 H 0.064 0.936 41 H 0.067 0.933 42 H 0.084 0.916 43 H 0.086 0.914 44 H 0.072 0.928 45 H 0.023 0.977 46 H 0.020 0.980 47 H 0.362 0.638 48 H 0.258 0.742 49 H 0.156 0.844 50 H 0.132 0.868 51 H 0.132 0.868 52 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.830 -25.047 -13.337 30.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.046 3.954 3 H 0.125 0.875 4 C -0.192 4.192 5 C 0.303 3.697 6 O -0.392 6.392 7 N -0.341 5.341 8 C -0.017 4.017 9 C -0.173 4.173 10 C -0.158 4.158 11 C -0.172 4.172 12 C 0.049 3.951 13 H 0.092 0.908 14 C -0.154 4.154 15 C 0.023 3.977 16 N -0.400 5.400 17 C -0.371 4.371 18 H 0.107 0.893 19 C -0.193 4.193 20 N -0.586 5.586 21 Si 0.714 3.286 22 H -0.211 1.211 23 H -0.218 1.218 24 H -0.201 1.201 25 N -0.117 5.117 26 C -0.145 4.145 27 C -0.229 4.229 28 C -0.230 4.230 29 C -0.143 4.143 30 H 0.116 0.884 31 H 0.081 0.919 32 H 0.075 0.925 33 H 0.116 0.884 34 H 0.115 0.885 35 H 0.100 0.900 36 H 0.088 0.912 37 H 0.085 0.915 38 H 0.092 0.908 39 H 0.084 0.916 40 H 0.083 0.917 41 H 0.086 0.914 42 H 0.102 0.898 43 H 0.105 0.895 44 H 0.090 0.910 45 H 0.041 0.959 46 H 0.038 0.962 47 H 0.195 0.805 48 H 0.068 0.932 49 H 0.173 0.827 50 H 0.150 0.850 51 H 0.150 0.850 52 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 10.338 -24.198 -12.865 29.291 hybrid contribution -0.234 0.142 -1.181 1.212 sum 10.104 -24.056 -14.046 29.632 Atomic orbital electron populations 1.22291 0.92624 1.02688 1.04794 1.21132 0.96168 0.96716 0.81423 0.87453 1.22083 1.03495 1.00770 0.92886 1.20233 0.79638 0.85785 0.84067 1.90844 1.38535 1.24028 1.85817 1.48157 1.59843 1.19794 1.06295 1.21764 0.96277 0.83443 1.00222 1.21914 1.00959 0.98311 0.96091 1.21538 1.00889 0.96612 0.96803 1.22067 0.99174 0.95910 1.00041 1.21351 0.98692 0.90979 0.84033 0.90845 1.22288 1.00553 0.94460 0.98133 1.20782 0.95068 0.87379 0.94456 1.42692 1.71060 1.19762 1.06488 1.19078 1.30608 0.96887 0.90492 0.89349 1.24660 1.00863 0.96813 0.97006 1.69704 1.46389 1.10685 1.31774 0.86537 0.78502 0.77030 0.86513 1.21131 1.21816 1.20107 1.44385 1.39113 1.10068 1.18152 1.21704 1.06872 0.86235 0.99723 1.20874 1.04879 0.99334 0.97860 1.20877 1.06963 0.94002 1.01203 1.21887 1.01024 0.99821 0.91591 0.88376 0.91893 0.92497 0.88377 0.88450 0.89994 0.91171 0.91483 0.90779 0.91584 0.91724 0.91412 0.89787 0.89538 0.90981 0.95870 0.96229 0.80489 0.93160 0.82698 0.85041 0.84981 0.82381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.67 8.98 37.16 0.33 -1.34 16 2 C 0.15 1.39 2.67 -67.93 -0.18 1.21 16 3 H 0.11 1.12 7.88 -51.93 -0.41 0.71 16 4 C -0.15 -1.23 3.56 -27.88 -0.10 -1.32 16 5 C 0.52 5.79 7.33 -10.99 -0.08 5.71 16 6 O -0.52 -7.72 9.38 5.55 0.05 -7.67 16 7 N -0.61 -6.19 2.97 -165.22 -0.49 -6.68 16 8 C 0.11 0.71 6.33 -3.71 -0.02 0.69 16 9 C -0.13 -0.87 6.08 -26.61 -0.16 -1.03 16 10 C -0.12 -0.96 5.88 -26.69 -0.16 -1.12 16 11 C -0.13 -1.46 4.90 -26.61 -0.13 -1.59 16 12 C 0.15 1.88 3.00 -67.60 -0.20 1.68 16 13 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 14 C -0.12 -1.94 3.25 -26.73 -0.09 -2.03 16 15 C 0.15 3.05 5.81 -4.04 -0.02 3.03 16 16 N -0.75 -19.21 5.41 -59.91 -0.32 -19.53 16 17 C -0.24 -7.14 10.47 -15.06 -0.16 -7.30 16 18 H 0.09 2.77 8.06 -52.49 -0.42 2.35 16 19 C 0.00 0.06 5.50 -17.43 -0.10 -0.04 16 20 N -0.94 -30.36 13.97 55.49 0.78 -29.58 16 21 Si 0.88 23.30 27.74 -169.99 -4.71 18.58 16 22 H -0.28 -7.43 7.11 56.52 0.40 -7.03 16 23 H -0.29 -7.70 7.11 56.52 0.40 -7.30 16 24 H -0.28 -6.98 6.52 56.52 0.37 -6.61 16 25 N -0.44 -4.20 2.62 -110.02 -0.29 -4.49 16 26 C -0.02 -0.14 10.45 -16.75 -0.18 -0.31 16 27 C -0.20 -1.95 10.86 -39.78 -0.43 -2.38 16 28 C -0.21 -2.02 10.86 -39.78 -0.43 -2.45 16 29 C -0.01 -0.13 11.39 -16.75 -0.19 -0.32 16 30 H 0.10 1.19 5.95 -51.93 -0.31 0.88 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.06 0.50 7.92 -51.93 -0.41 0.09 16 33 H 0.10 0.71 8.12 -51.93 -0.42 0.29 16 34 H 0.10 0.63 7.38 -51.93 -0.38 0.24 16 35 H 0.08 0.41 5.97 -51.93 -0.31 0.10 16 36 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 38 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.08 0.99 6.92 -51.93 -0.36 0.63 16 43 H 0.09 1.61 6.34 -51.93 -0.33 1.28 16 44 H 0.07 1.30 7.13 -51.93 -0.37 0.93 16 45 H 0.02 0.47 6.90 -51.93 -0.36 0.11 16 46 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 47 H 0.36 9.22 5.53 -40.82 -0.23 8.99 16 48 H 0.26 7.96 8.31 -40.82 -0.34 7.62 16 49 H 0.16 1.07 8.06 -52.49 -0.42 0.64 16 50 H 0.13 1.04 8.06 -52.48 -0.42 0.61 16 51 H 0.13 1.09 8.06 -52.48 -0.42 0.67 16 52 H 0.16 1.27 8.06 -52.48 -0.42 0.85 16 LS Contribution 398.03 15.07 6.00 6.00 Total: -1.00 -34.78 398.03 -10.26 -45.05 By element: Atomic # 1 Polarization: 16.21 SS G_CDS: -8.97 Total: 7.24 kcal Atomic # 6 Polarization: -6.62 SS G_CDS: -2.30 Total: -8.92 kcal Atomic # 7 Polarization: -59.95 SS G_CDS: -0.33 Total: -60.28 kcal Atomic # 8 Polarization: -7.72 SS G_CDS: 0.05 Total: -7.67 kcal Atomic # 14 Polarization: 23.30 SS G_CDS: -4.71 Total: 18.58 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -34.78 -10.26 -45.05 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715449157.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.314 kcal (2) G-P(sol) polarization free energy of solvation -34.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.047 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds