Wall clock time and date at job start Tue Mar 31 2020 17:33:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.47589 * 2 1 4 4 N 1.46501 * 109.47084 * 120.00637 * 2 1 3 5 5 C 1.36931 * 119.99869 * 274.99603 * 4 2 1 6 6 H 1.07998 * 120.00067 * 0.02562 * 5 4 2 7 7 C 1.38809 * 120.00322 * 180.02562 * 5 4 2 8 8 N 1.31618 * 119.99675 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 120.00463 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47330 * 59.99368 * 9 7 5 11 11 H 1.48498 * 109.47316 * 180.02562 * 9 7 5 12 12 H 1.48509 * 109.46598 * 299.99655 * 9 7 5 13 13 C 1.53008 * 109.46979 * 240.00403 * 2 1 3 14 14 H 1.09003 * 109.49796 * 185.07090 * 13 2 1 15 15 C 1.53042 * 109.52401 * 305.11173 * 13 2 1 16 16 C 1.53036 * 109.54058 * 181.30039 * 15 13 2 17 17 C 1.53187 * 109.33909 * 298.68652 * 16 15 13 18 18 N 1.46928 * 108.77623 * 54.61900 * 17 16 15 19 19 C 1.34782 * 120.63146 * 126.41312 * 18 17 16 20 20 O 1.21278 * 119.99668 * 179.97438 * 19 18 17 21 21 C 1.50699 * 119.99844 * 359.97438 * 19 18 17 22 22 C 1.52999 * 109.46991 * 179.97438 * 21 19 18 23 23 C 1.52994 * 109.47322 * 179.97438 * 22 21 19 24 24 N 1.46500 * 109.47532 * 180.02562 * 23 22 21 25 25 C 1.36339 * 125.63449 * 269.69937 * 24 23 22 26 26 C 1.34856 * 108.21986 * 179.82757 * 25 24 23 27 27 C 1.40892 * 107.41352 * 0.42238 * 26 25 24 28 28 C 1.34854 * 107.41811 * 359.73679 * 27 26 25 29 29 C 1.46927 * 118.73615 * 306.39196 * 18 17 16 30 30 H 1.08995 * 109.46707 * 300.00099 * 1 2 3 31 31 H 1.09005 * 109.46576 * 59.99542 * 1 2 3 32 32 H 1.08994 * 109.47037 * 179.97438 * 1 2 3 33 33 H 0.97000 * 120.00035 * 95.00052 * 4 2 1 34 34 H 0.97006 * 119.99894 * 180.02562 * 8 7 5 35 35 H 1.08998 * 109.42702 * 61.29456 * 15 13 2 36 36 H 1.09003 * 109.48758 * 301.34503 * 15 13 2 37 37 H 1.09002 * 109.49886 * 178.71774 * 16 15 13 38 38 H 1.09000 * 109.49395 * 58.65251 * 16 15 13 39 39 H 1.09000 * 109.58836 * 174.40473 * 17 16 15 40 40 H 1.08999 * 109.58980 * 294.83076 * 17 16 15 41 41 H 1.09000 * 109.46886 * 300.00305 * 21 19 18 42 42 H 1.08997 * 109.47158 * 59.99933 * 21 19 18 43 43 H 1.08998 * 109.47340 * 300.00381 * 22 21 19 44 44 H 1.09001 * 109.46691 * 59.99839 * 22 21 19 45 45 H 1.08998 * 109.47382 * 300.00549 * 23 22 21 46 46 H 1.09001 * 109.47211 * 60.00351 * 23 22 21 47 47 H 1.08002 * 125.89182 * 359.95453 * 25 24 23 48 48 H 1.07994 * 126.29183 * 180.15814 * 26 25 24 49 49 H 1.07993 * 126.29268 * 179.73713 * 27 26 25 50 50 H 1.07993 * 125.89276 * 179.97438 * 28 27 26 51 51 H 1.08999 * 109.58621 * 173.39948 * 29 18 17 52 52 H 1.09005 * 109.58884 * 293.81524 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1492 -0.0077 2.3757 6 1 1.8920 1.0400 2.4244 7 6 2.6124 -0.6620 3.5089 8 7 2.9253 -1.9390 3.4497 9 14 2.7902 0.2696 5.1183 10 1 1.4675 0.8055 5.5289 11 1 3.3004 -0.6486 6.1680 12 1 3.7448 1.3927 4.9371 13 6 2.0400 -0.7212 -1.2494 14 1 3.1262 -0.8008 -1.2056 15 6 1.4283 -2.1224 -1.3166 16 6 1.9632 -2.8559 -2.5486 17 6 1.5574 -2.0894 -3.8113 18 7 2.0180 -0.6995 -3.6893 19 6 2.7769 -0.1404 -4.6527 20 8 3.1503 1.0080 -4.5403 21 6 3.1612 -0.9423 -5.8693 22 6 4.0162 -0.0794 -6.7996 23 6 4.4070 -0.8936 -8.0345 24 7 5.2262 -0.0677 -8.9250 25 6 4.7557 0.7237 -9.9305 26 6 5.8080 1.3270 -10.5198 27 6 6.9715 0.8846 -9.8599 28 6 6.5855 0.0323 -8.8888 29 6 1.6351 0.0695 -2.4973 30 1 -0.3632 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 2.2490 -1.6319 1.1524 34 1 3.2487 -2.3964 4.2417 35 1 0.3434 -2.0415 -1.3846 36 1 1.6950 -2.6791 -0.4182 37 1 1.5447 -3.8618 -2.5834 38 1 3.0501 -2.9158 -2.4929 39 1 2.0189 -2.5519 -4.6838 40 1 0.4727 -2.1069 -3.9167 41 1 3.7305 -1.8194 -5.5614 42 1 2.2606 -1.2598 -6.3946 43 1 3.4466 0.7974 -7.1074 44 1 4.9169 0.2385 -6.2744 45 1 4.9768 -1.7703 -7.7263 46 1 3.5065 -1.2119 -8.5598 47 1 3.7188 0.8478 -10.2062 48 1 5.7668 2.0185 -11.3483 49 1 7.9861 1.1746 -10.0895 50 1 7.2400 -0.4827 -8.2013 51 1 2.1478 1.0314 -2.5027 52 1 0.5567 0.2281 -2.4955 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715457772.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:33:50 Heat of formation + Delta-G solvation = 13.733134 kcal Electronic energy + Delta-G solvation = -28490.710345 eV Core-core repulsion = 24683.829792 eV Total energy + Delta-G solvation = -3806.880553 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.32489 -40.35264 -38.10691 -35.51830 -35.28797 -32.92252 -31.93168 -31.62469 -30.00066 -28.97236 -27.94557 -27.08783 -25.18956 -24.48529 -23.05103 -22.41276 -21.50290 -20.67254 -20.19239 -19.15838 -18.64436 -17.79627 -17.26403 -16.94470 -16.19137 -15.91397 -14.92191 -14.83077 -14.79188 -14.38405 -14.24700 -14.05714 -13.92176 -13.70622 -13.46724 -13.12365 -13.01466 -12.78572 -12.60242 -12.46532 -12.39601 -12.26625 -12.18176 -12.04444 -11.92616 -11.42495 -11.23826 -11.17210 -10.95693 -10.83152 -10.68015 -10.55785 -10.28698 -10.11352 -9.94249 -9.67396 -9.61916 -8.90491 -8.82284 -8.59127 -8.35945 -6.96019 -5.76852 -3.04845 2.06295 2.53576 2.64864 2.87550 2.97336 3.44118 3.48618 3.49393 4.19953 4.26960 4.48819 4.58844 4.67681 4.77675 4.79379 4.83906 4.94324 4.96948 5.01343 5.05343 5.11630 5.19636 5.33254 5.35571 5.43131 5.46236 5.54566 5.59228 5.61256 5.76105 5.83349 5.84537 5.87278 5.98781 6.01120 6.09202 6.11950 6.16107 6.21959 6.37465 6.45402 6.52080 6.66912 6.72265 6.79313 6.90508 7.02774 7.12701 7.16682 7.35448 7.70517 8.10169 8.42385 9.53513 10.11291 10.46099 11.45925 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.019455 B = 0.001949 C = 0.001877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.862885 B =14363.582558 C =14910.209006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.179 3.821 3 H 0.047 0.953 4 N -0.722 5.722 5 C -0.236 4.236 6 H 0.069 0.931 7 C -0.015 4.015 8 N -0.935 5.935 9 Si 0.906 3.094 10 H -0.286 1.286 11 H -0.292 1.292 12 H -0.286 1.286 13 C -0.103 4.103 14 H 0.073 0.927 15 C -0.115 4.115 16 C -0.136 4.136 17 C 0.107 3.893 18 N -0.609 5.609 19 C 0.512 3.488 20 O -0.542 6.542 21 C -0.137 4.137 22 C -0.120 4.120 23 C 0.105 3.895 24 N -0.447 5.447 25 C -0.016 4.016 26 C -0.204 4.204 27 C -0.205 4.205 28 C -0.015 4.015 29 C 0.116 3.884 30 H 0.052 0.948 31 H 0.036 0.964 32 H 0.050 0.950 33 H 0.383 0.617 34 H 0.255 0.745 35 H 0.065 0.935 36 H 0.076 0.924 37 H 0.073 0.927 38 H 0.066 0.934 39 H 0.080 0.920 40 H 0.069 0.931 41 H 0.096 0.904 42 H 0.094 0.906 43 H 0.078 0.922 44 H 0.079 0.921 45 H 0.090 0.910 46 H 0.089 0.911 47 H 0.159 0.841 48 H 0.133 0.867 49 H 0.133 0.867 50 H 0.159 0.841 51 H 0.090 0.910 52 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.826 -2.816 -26.794 26.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.069 3.931 3 H 0.065 0.935 4 N -0.364 5.364 5 C -0.368 4.368 6 H 0.087 0.913 7 C -0.210 4.210 8 N -0.583 5.583 9 Si 0.737 3.263 10 H -0.213 1.213 11 H -0.217 1.217 12 H -0.213 1.213 13 C -0.123 4.123 14 H 0.091 0.909 15 C -0.152 4.152 16 C -0.174 4.174 17 C -0.016 4.016 18 N -0.342 5.342 19 C 0.300 3.700 20 O -0.419 6.419 21 C -0.178 4.178 22 C -0.159 4.159 23 C -0.017 4.017 24 N -0.122 5.122 25 C -0.146 4.146 26 C -0.229 4.229 27 C -0.229 4.229 28 C -0.144 4.144 29 C -0.006 4.006 30 H 0.071 0.929 31 H 0.055 0.945 32 H 0.069 0.931 33 H 0.218 0.782 34 H 0.065 0.935 35 H 0.084 0.916 36 H 0.094 0.906 37 H 0.091 0.909 38 H 0.084 0.916 39 H 0.098 0.902 40 H 0.087 0.913 41 H 0.114 0.886 42 H 0.113 0.887 43 H 0.096 0.904 44 H 0.097 0.903 45 H 0.108 0.892 46 H 0.108 0.892 47 H 0.176 0.824 48 H 0.151 0.849 49 H 0.151 0.849 50 H 0.177 0.823 51 H 0.108 0.892 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -0.819 -2.303 -26.354 26.467 hybrid contribution 0.107 0.026 1.095 1.101 sum -0.712 -2.277 -25.259 25.371 Atomic orbital electron populations 1.22562 0.99438 1.00945 0.99838 1.20127 0.91811 0.95298 0.85912 0.93473 1.42416 1.78164 1.10661 1.05176 1.19208 1.36319 0.93882 0.87350 0.91271 1.24719 1.02272 0.96002 0.98039 1.69645 1.51107 1.08652 1.28944 0.86280 0.77768 0.78619 0.83601 1.21327 1.21746 1.21305 1.21767 1.00997 0.95221 0.94292 0.90860 1.21606 1.00253 0.95757 0.97624 1.21947 1.01791 0.98842 0.94836 1.21788 0.99703 0.81176 0.98922 1.48176 1.51573 1.13620 1.20799 1.20514 0.77884 0.87455 0.84150 1.90719 1.54230 1.18152 1.78789 1.21598 1.01625 0.99647 0.94896 1.21716 1.01268 0.98615 0.94279 1.21897 0.95720 0.93351 0.90755 1.44131 1.06310 1.35667 1.26095 1.21825 0.99373 0.99420 0.93994 1.20899 0.92391 1.05601 1.04016 1.20905 0.98720 1.03252 1.00046 1.21854 0.83304 1.05552 1.03740 1.21792 1.00168 0.95691 0.82993 0.92924 0.94494 0.93087 0.78215 0.93545 0.91602 0.90557 0.90859 0.91564 0.90169 0.91268 0.88571 0.88732 0.90353 0.90259 0.89190 0.89248 0.82407 0.84941 0.84912 0.82330 0.89180 0.91167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.90 8.76 37.16 0.33 -2.57 16 2 C 0.18 3.46 2.67 -67.92 -0.18 3.27 16 3 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 4 N -0.72 -17.64 5.06 -53.42 -0.27 -17.91 16 5 C -0.24 -6.52 9.93 -15.06 -0.15 -6.67 16 6 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 7 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 8 N -0.93 -27.95 13.06 55.49 0.72 -27.23 16 9 Si 0.91 22.45 29.55 -169.99 -5.02 17.43 16 10 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 11 H -0.29 -7.28 7.11 56.52 0.40 -6.87 16 12 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 13 C -0.10 -1.63 2.27 -90.50 -0.21 -1.84 16 14 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 15 C -0.11 -1.60 4.52 -26.69 -0.12 -1.72 16 16 C -0.14 -1.41 6.08 -26.62 -0.16 -1.57 16 17 C 0.11 0.92 6.34 -3.71 -0.02 0.90 16 18 N -0.61 -7.14 2.97 -172.78 -0.51 -7.65 16 19 C 0.51 6.26 7.70 -10.98 -0.08 6.18 16 20 O -0.54 -8.99 15.40 5.56 0.09 -8.90 16 21 C -0.14 -0.99 4.05 -27.88 -0.11 -1.11 16 22 C -0.12 -0.97 4.83 -26.73 -0.13 -1.10 16 23 C 0.10 0.62 6.09 -4.04 -0.02 0.60 16 24 N -0.45 -3.86 2.75 -117.13 -0.32 -4.18 16 25 C -0.02 -0.15 11.43 -16.75 -0.19 -0.34 16 26 C -0.20 -1.97 10.86 -39.78 -0.43 -2.40 16 27 C -0.20 -2.00 10.86 -39.78 -0.43 -2.43 16 28 C -0.01 -0.14 11.43 -16.75 -0.19 -0.33 16 29 C 0.12 1.62 5.58 -3.72 -0.02 1.60 16 30 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.04 0.53 6.46 -51.93 -0.34 0.20 16 32 H 0.05 0.86 6.38 -51.93 -0.33 0.53 16 33 H 0.38 9.83 6.37 -40.82 -0.26 9.57 16 34 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 35 H 0.07 0.87 6.42 -51.93 -0.33 0.54 16 36 H 0.08 1.26 6.75 -51.93 -0.35 0.91 16 37 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 38 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 39 H 0.08 0.46 5.93 -51.93 -0.31 0.15 16 40 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 41 H 0.10 0.53 7.69 -51.93 -0.40 0.14 16 42 H 0.09 0.46 7.94 -51.93 -0.41 0.05 16 43 H 0.08 0.77 8.10 -51.93 -0.42 0.35 16 44 H 0.08 0.82 8.10 -51.93 -0.42 0.40 16 45 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 46 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 47 H 0.16 1.03 8.06 -52.49 -0.42 0.61 16 48 H 0.13 1.07 8.06 -52.49 -0.42 0.64 16 49 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 50 H 0.16 1.12 8.06 -52.49 -0.42 0.70 16 51 H 0.09 1.44 7.01 -51.93 -0.36 1.07 16 52 H 0.07 0.91 6.35 -51.93 -0.33 0.58 16 LS Contribution 405.95 15.07 6.12 6.12 Total: -1.00 -33.88 405.95 -10.31 -44.19 By element: Atomic # 1 Polarization: 17.05 SS G_CDS: -8.88 Total: 8.17 kcal Atomic # 6 Polarization: -7.81 SS G_CDS: -2.23 Total: -10.04 kcal Atomic # 7 Polarization: -56.59 SS G_CDS: -0.38 Total: -56.97 kcal Atomic # 8 Polarization: -8.99 SS G_CDS: 0.09 Total: -8.90 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.43 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -33.88 -10.31 -44.19 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715457772.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.927 kcal (2) G-P(sol) polarization free energy of solvation -33.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.194 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds