Wall clock time and date at job start Tue Mar 31 2020 17:33:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.47589 * 2 1 4 4 N 1.46501 * 109.47084 * 120.00637 * 2 1 3 5 5 C 1.36931 * 119.99869 * 274.99603 * 4 2 1 6 6 H 1.07998 * 120.00067 * 0.02562 * 5 4 2 7 7 C 1.38809 * 120.00322 * 180.02562 * 5 4 2 8 8 N 1.31618 * 119.99675 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 120.00463 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47330 * 59.99368 * 9 7 5 11 11 H 1.48498 * 109.47316 * 180.02562 * 9 7 5 12 12 H 1.48509 * 109.46598 * 299.99655 * 9 7 5 13 13 C 1.53008 * 109.46979 * 240.00403 * 2 1 3 14 14 H 1.09003 * 109.49796 * 185.07090 * 13 2 1 15 15 C 1.53042 * 109.52401 * 305.11173 * 13 2 1 16 16 C 1.53036 * 109.54058 * 181.30039 * 15 13 2 17 17 C 1.53187 * 109.33909 * 298.68652 * 16 15 13 18 18 N 1.46928 * 108.77623 * 54.61900 * 17 16 15 19 19 C 1.34782 * 120.63146 * 126.41312 * 18 17 16 20 20 O 1.21278 * 119.99668 * 179.97438 * 19 18 17 21 21 C 1.50699 * 119.99844 * 359.97438 * 19 18 17 22 22 C 1.52999 * 109.46991 * 179.97438 * 21 19 18 23 23 C 1.52994 * 109.47322 * 179.97438 * 22 21 19 24 24 N 1.46500 * 109.47532 * 180.02562 * 23 22 21 25 25 C 1.36339 * 125.63449 * 269.69937 * 24 23 22 26 26 C 1.34856 * 108.21986 * 179.82757 * 25 24 23 27 27 C 1.40892 * 107.41352 * 0.42238 * 26 25 24 28 28 C 1.34854 * 107.41811 * 359.73679 * 27 26 25 29 29 C 1.46927 * 118.73615 * 306.39196 * 18 17 16 30 30 H 1.08995 * 109.46707 * 300.00099 * 1 2 3 31 31 H 1.09005 * 109.46576 * 59.99542 * 1 2 3 32 32 H 1.08994 * 109.47037 * 179.97438 * 1 2 3 33 33 H 0.97000 * 120.00035 * 95.00052 * 4 2 1 34 34 H 0.97006 * 119.99894 * 180.02562 * 8 7 5 35 35 H 1.08998 * 109.42702 * 61.29456 * 15 13 2 36 36 H 1.09003 * 109.48758 * 301.34503 * 15 13 2 37 37 H 1.09002 * 109.49886 * 178.71774 * 16 15 13 38 38 H 1.09000 * 109.49395 * 58.65251 * 16 15 13 39 39 H 1.09000 * 109.58836 * 174.40473 * 17 16 15 40 40 H 1.08999 * 109.58980 * 294.83076 * 17 16 15 41 41 H 1.09000 * 109.46886 * 300.00305 * 21 19 18 42 42 H 1.08997 * 109.47158 * 59.99933 * 21 19 18 43 43 H 1.08998 * 109.47340 * 300.00381 * 22 21 19 44 44 H 1.09001 * 109.46691 * 59.99839 * 22 21 19 45 45 H 1.08998 * 109.47382 * 300.00549 * 23 22 21 46 46 H 1.09001 * 109.47211 * 60.00351 * 23 22 21 47 47 H 1.08002 * 125.89182 * 359.95453 * 25 24 23 48 48 H 1.07994 * 126.29183 * 180.15814 * 26 25 24 49 49 H 1.07993 * 126.29268 * 179.73713 * 27 26 25 50 50 H 1.07993 * 125.89276 * 179.97438 * 28 27 26 51 51 H 1.08999 * 109.58621 * 173.39948 * 29 18 17 52 52 H 1.09005 * 109.58884 * 293.81524 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1492 -0.0077 2.3757 6 1 1.8920 1.0400 2.4244 7 6 2.6124 -0.6620 3.5089 8 7 2.9253 -1.9390 3.4497 9 14 2.7902 0.2696 5.1183 10 1 1.4675 0.8055 5.5289 11 1 3.3004 -0.6486 6.1680 12 1 3.7448 1.3927 4.9371 13 6 2.0400 -0.7212 -1.2494 14 1 3.1262 -0.8008 -1.2056 15 6 1.4283 -2.1224 -1.3166 16 6 1.9632 -2.8559 -2.5486 17 6 1.5574 -2.0894 -3.8113 18 7 2.0180 -0.6995 -3.6893 19 6 2.7769 -0.1404 -4.6527 20 8 3.1503 1.0080 -4.5403 21 6 3.1612 -0.9423 -5.8693 22 6 4.0162 -0.0794 -6.7996 23 6 4.4070 -0.8936 -8.0345 24 7 5.2262 -0.0677 -8.9250 25 6 4.7557 0.7237 -9.9305 26 6 5.8080 1.3270 -10.5198 27 6 6.9715 0.8846 -9.8599 28 6 6.5855 0.0323 -8.8888 29 6 1.6351 0.0695 -2.4973 30 1 -0.3632 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 2.2490 -1.6319 1.1524 34 1 3.2487 -2.3964 4.2417 35 1 0.3434 -2.0415 -1.3846 36 1 1.6950 -2.6791 -0.4182 37 1 1.5447 -3.8618 -2.5834 38 1 3.0501 -2.9158 -2.4929 39 1 2.0189 -2.5519 -4.6838 40 1 0.4727 -2.1069 -3.9167 41 1 3.7305 -1.8194 -5.5614 42 1 2.2606 -1.2598 -6.3946 43 1 3.4466 0.7974 -7.1074 44 1 4.9169 0.2385 -6.2744 45 1 4.9768 -1.7703 -7.7263 46 1 3.5065 -1.2119 -8.5598 47 1 3.7188 0.8478 -10.2062 48 1 5.7668 2.0185 -11.3483 49 1 7.9861 1.1746 -10.0895 50 1 7.2400 -0.4827 -8.2013 51 1 2.1478 1.0314 -2.5027 52 1 0.5567 0.2281 -2.4955 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715457772.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:33:49 Heat of formation + Delta-G solvation = -5.729089 kcal Electronic energy + Delta-G solvation = -28491.554290 eV Core-core repulsion = 24683.829792 eV Total energy + Delta-G solvation = -3807.724498 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.95075 -41.33065 -39.30452 -36.93353 -35.93225 -34.62356 -33.07432 -32.43031 -31.51870 -29.61531 -29.44228 -27.87138 -26.23177 -26.09071 -24.38446 -23.24428 -22.59961 -21.32538 -20.80313 -20.31867 -19.75258 -19.29020 -18.46126 -17.83975 -17.02571 -16.89934 -16.47343 -15.88511 -15.74632 -15.51128 -15.47335 -15.25055 -15.04627 -14.59307 -14.47427 -14.28065 -14.04584 -13.97513 -13.68941 -13.48258 -13.28662 -13.08436 -12.92817 -12.88688 -12.81509 -12.75942 -12.63306 -12.48043 -12.38836 -12.17563 -11.95853 -11.80857 -11.77030 -11.61097 -11.48556 -11.15733 -10.90744 -10.77359 -9.60119 -9.48082 -9.02634 -9.00831 -7.95255 -5.22383 1.40502 1.44661 1.47240 1.53176 1.63710 1.96552 2.17398 2.23237 2.55008 3.37673 3.48855 3.78934 3.80634 3.82820 3.88865 3.93797 4.05995 4.22906 4.28848 4.30205 4.31788 4.36421 4.42124 4.42446 4.50863 4.58744 4.60238 4.67142 4.70934 4.73412 4.78052 4.80897 4.88435 4.91989 5.01389 5.07212 5.11293 5.13786 5.23105 5.28208 5.42208 5.42342 5.44969 5.46843 5.52058 5.56327 5.67570 6.12208 6.27746 6.36933 6.47160 6.58596 7.19359 7.34010 8.11332 8.35157 9.27916 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.019455 B = 0.001949 C = 0.001877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.862885 B =14363.582558 C =14910.209006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.171 3.829 3 H 0.028 0.972 4 N -0.733 5.733 5 C -0.239 4.239 6 H 0.070 0.930 7 C -0.075 4.075 8 N -0.968 5.968 9 Si 0.969 3.031 10 H -0.278 1.278 11 H -0.294 1.294 12 H -0.282 1.282 13 C -0.089 4.089 14 H 0.041 0.959 15 C -0.111 4.111 16 C -0.131 4.131 17 C 0.106 3.894 18 N -0.609 5.609 19 C 0.502 3.498 20 O -0.597 6.597 21 C -0.125 4.125 22 C -0.112 4.112 23 C 0.107 3.893 24 N -0.450 5.450 25 C -0.022 4.022 26 C -0.230 4.230 27 C -0.230 4.230 28 C -0.027 4.027 29 C 0.124 3.876 30 H 0.031 0.969 31 H 0.070 0.930 32 H 0.056 0.944 33 H 0.375 0.625 34 H 0.250 0.750 35 H 0.078 0.922 36 H 0.042 0.958 37 H 0.100 0.900 38 H 0.054 0.946 39 H 0.122 0.878 40 H 0.091 0.909 41 H 0.124 0.876 42 H 0.135 0.865 43 H 0.055 0.945 44 H 0.047 0.953 45 H 0.111 0.889 46 H 0.118 0.882 47 H 0.181 0.819 48 H 0.140 0.860 49 H 0.138 0.862 50 H 0.175 0.825 51 H 0.062 0.938 52 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.528 -4.436 -28.916 29.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.062 3.938 3 H 0.046 0.954 4 N -0.375 5.375 5 C -0.371 4.371 6 H 0.088 0.912 7 C -0.268 4.268 8 N -0.619 5.619 9 Si 0.799 3.201 10 H -0.204 1.204 11 H -0.220 1.220 12 H -0.209 1.209 13 C -0.109 4.109 14 H 0.060 0.940 15 C -0.149 4.149 16 C -0.169 4.169 17 C -0.016 4.016 18 N -0.341 5.341 19 C 0.292 3.708 20 O -0.479 6.479 21 C -0.165 4.165 22 C -0.151 4.151 23 C -0.014 4.014 24 N -0.125 5.125 25 C -0.152 4.152 26 C -0.255 4.255 27 C -0.254 4.254 28 C -0.157 4.157 29 C 0.001 3.999 30 H 0.050 0.950 31 H 0.089 0.911 32 H 0.075 0.925 33 H 0.208 0.792 34 H 0.059 0.941 35 H 0.097 0.903 36 H 0.061 0.939 37 H 0.118 0.882 38 H 0.072 0.928 39 H 0.140 0.860 40 H 0.109 0.891 41 H 0.142 0.858 42 H 0.153 0.847 43 H 0.074 0.926 44 H 0.066 0.934 45 H 0.129 0.871 46 H 0.136 0.864 47 H 0.198 0.802 48 H 0.157 0.843 49 H 0.156 0.844 50 H 0.192 0.808 51 H 0.080 0.920 52 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -2.555 -3.928 -28.511 28.893 hybrid contribution 0.639 0.594 1.725 1.933 sum -1.915 -3.334 -26.786 27.060 Atomic orbital electron populations 1.22369 0.97094 1.01489 1.00464 1.20359 0.93351 0.94285 0.85810 0.95368 1.42588 1.78522 1.10379 1.05968 1.19561 1.34926 0.94064 0.88571 0.91223 1.25488 1.03076 0.96948 1.01257 1.69795 1.52668 1.10015 1.29394 0.85274 0.77894 0.77310 0.79670 1.20428 1.22024 1.20883 1.21533 0.98993 0.96754 0.93654 0.94029 1.21550 1.00925 0.94073 0.98340 1.21925 1.01064 1.00033 0.93859 1.22099 1.01386 0.78805 0.99260 1.48295 1.51349 1.14841 1.19630 1.21504 0.76738 0.87212 0.85301 1.90702 1.56164 1.20907 1.80081 1.21648 1.03409 0.99105 0.92347 1.21585 0.99760 0.98566 0.95216 1.22074 0.96903 0.92898 0.89522 1.44367 1.06312 1.35698 1.26160 1.22249 1.00273 0.98934 0.93786 1.21191 0.92887 1.06496 1.04878 1.21188 0.99302 1.04061 1.00858 1.22202 0.84133 1.05559 1.03826 1.21489 1.00605 0.94495 0.83316 0.95022 0.91081 0.92509 0.79221 0.94090 0.90306 0.93880 0.88159 0.92762 0.86002 0.89112 0.85769 0.84739 0.92578 0.93393 0.87051 0.86372 0.80180 0.84251 0.84449 0.80767 0.91967 0.89524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.24 8.76 71.98 0.63 -4.60 16 2 C 0.17 6.76 2.67 44.99 0.12 6.88 16 3 H 0.03 1.21 8.08 -2.39 -0.02 1.19 16 4 N -0.73 -37.06 5.06 -322.94 -1.63 -38.69 16 5 C -0.24 -13.51 9.93 84.03 0.83 -12.68 16 6 H 0.07 3.84 7.83 -2.91 -0.02 3.81 16 7 C -0.08 -4.38 5.50 84.86 0.47 -3.92 16 8 N -0.97 -59.33 13.06 21.65 0.28 -59.05 16 9 Si 0.97 46.93 29.55 68.60 2.03 48.96 16 10 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 11 H -0.29 -14.26 7.11 99.48 0.71 -13.55 16 12 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 13 C -0.09 -2.87 2.27 -10.72 -0.02 -2.89 16 14 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 15 C -0.11 -2.98 4.52 30.62 0.14 -2.84 16 16 C -0.13 -2.32 6.08 30.67 0.19 -2.13 16 17 C 0.11 1.31 6.34 86.36 0.55 1.86 16 18 N -0.61 -12.82 2.97 -818.93 -2.43 -15.26 16 19 C 0.50 11.38 7.70 87.66 0.67 12.05 16 20 O -0.60 -20.16 15.40 -3.02 -0.05 -20.20 16 21 C -0.13 -1.31 4.05 29.85 0.12 -1.19 16 22 C -0.11 -1.59 4.83 30.59 0.15 -1.44 16 23 C 0.11 0.90 6.09 86.38 0.53 1.43 16 24 N -0.45 -6.96 2.75 -524.49 -1.44 -8.40 16 25 C -0.02 -0.37 11.43 83.22 0.95 0.59 16 26 C -0.23 -4.37 10.86 22.14 0.24 -4.13 16 27 C -0.23 -4.50 10.86 22.14 0.24 -4.26 16 28 C -0.03 -0.48 11.43 83.21 0.95 0.48 16 29 C 0.12 3.39 5.58 86.36 0.48 3.87 16 30 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.07 1.91 6.46 -2.38 -0.02 1.89 16 32 H 0.06 1.85 6.38 -2.39 -0.02 1.84 16 33 H 0.37 20.03 6.37 -92.71 -0.59 19.44 16 34 H 0.25 14.93 8.31 -92.70 -0.77 14.16 16 35 H 0.08 1.89 6.42 -2.39 -0.02 1.88 16 36 H 0.04 1.44 6.75 -2.39 -0.02 1.43 16 37 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.12 0.58 5.93 -2.39 -0.01 0.56 16 40 H 0.09 0.85 8.14 -2.39 -0.02 0.84 16 41 H 0.12 0.70 7.69 -2.39 -0.02 0.68 16 42 H 0.13 0.43 7.94 -2.39 -0.02 0.41 16 43 H 0.06 1.04 8.10 -2.39 -0.02 1.03 16 44 H 0.05 0.98 8.10 -2.39 -0.02 0.96 16 45 H 0.11 0.52 8.14 -2.39 -0.02 0.50 16 46 H 0.12 0.38 8.14 -2.39 -0.02 0.36 16 47 H 0.18 1.94 8.06 -2.91 -0.02 1.92 16 48 H 0.14 2.25 8.06 -2.91 -0.02 2.23 16 49 H 0.14 2.35 8.06 -2.91 -0.02 2.33 16 50 H 0.18 2.29 8.06 -2.91 -0.02 2.27 16 51 H 0.06 2.06 7.01 -2.39 -0.02 2.04 16 52 H 0.09 2.06 6.35 -2.38 -0.02 2.05 16 Total: -1.00 -79.42 405.95 4.29 -75.13 By element: Atomic # 1 Polarization: 30.14 SS G_CDS: 0.30 Total: 30.45 kcal Atomic # 6 Polarization: -20.16 SS G_CDS: 7.24 Total: -12.93 kcal Atomic # 7 Polarization: -116.17 SS G_CDS: -5.23 Total: -121.40 kcal Atomic # 8 Polarization: -20.16 SS G_CDS: -0.05 Total: -20.20 kcal Atomic # 14 Polarization: 46.93 SS G_CDS: 2.03 Total: 48.96 kcal Total: -79.42 4.29 -75.13 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715457772.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.396 kcal (2) G-P(sol) polarization free energy of solvation -79.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds