Wall clock time and date at job start Tue Mar 31 2020 17:33:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47318 * 2 1 4 4 N 1.46502 * 109.46636 * 119.99823 * 2 1 3 5 5 C 1.36945 * 119.99738 * 274.99276 * 4 2 1 6 6 H 1.08001 * 119.99847 * 0.02562 * 5 4 2 7 7 C 1.38810 * 119.99685 * 180.02562 * 5 4 2 8 8 N 1.31620 * 120.00163 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 119.99811 * 180.02562 * 7 5 4 10 10 H 1.48493 * 109.47432 * 89.99967 * 9 7 5 11 11 H 1.48506 * 109.46660 * 210.00170 * 9 7 5 12 12 H 1.48499 * 109.46807 * 329.99577 * 9 7 5 13 13 C 1.53001 * 109.47003 * 239.99428 * 2 1 3 14 14 H 1.09003 * 109.52339 * 299.91757 * 13 2 1 15 15 C 1.53037 * 109.49539 * 179.84222 * 13 2 1 16 16 C 1.53038 * 109.53876 * 178.68529 * 15 13 2 17 17 C 1.52764 * 109.38398 * 61.23747 * 16 15 13 18 18 N 1.46927 * 109.00591 * 305.59101 * 17 16 15 19 19 C 1.34777 * 120.62690 * 233.58001 * 18 17 16 20 20 O 1.21278 * 119.99854 * 179.71790 * 19 18 17 21 21 C 1.50703 * 120.00161 * 359.72483 * 19 18 17 22 22 C 1.53000 * 109.46912 * 179.97438 * 21 19 18 23 23 C 1.52997 * 109.47060 * 179.97438 * 22 21 19 24 24 N 1.46500 * 109.47473 * 180.02562 * 23 22 21 25 25 C 1.36341 * 125.63785 * 269.69842 * 24 23 22 26 26 C 1.34849 * 108.21665 * 179.82817 * 25 24 23 27 27 C 1.40888 * 107.41794 * 0.42143 * 26 25 24 28 28 C 1.34847 * 107.41968 * 359.74118 * 27 26 25 29 29 C 1.46923 * 118.74168 * 53.30853 * 18 17 16 30 30 H 1.08993 * 109.47309 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.47096 * 300.00556 * 1 2 3 32 32 H 1.08999 * 109.46944 * 60.00248 * 1 2 3 33 33 H 0.97003 * 120.00389 * 95.00402 * 4 2 1 34 34 H 0.97002 * 119.99705 * 179.97438 * 8 7 5 35 35 H 1.08999 * 109.46135 * 298.70260 * 15 13 2 36 36 H 1.08998 * 109.46529 * 58.66075 * 15 13 2 37 37 H 1.09005 * 109.50245 * 181.31520 * 16 15 13 38 38 H 1.09000 * 109.49759 * 301.41324 * 16 15 13 39 39 H 1.08994 * 109.51034 * 185.70660 * 17 16 15 40 40 H 1.08998 * 109.42924 * 65.42828 * 17 16 15 41 41 H 1.09001 * 109.46980 * 59.99654 * 21 19 18 42 42 H 1.08992 * 109.47158 * 299.99760 * 21 19 18 43 43 H 1.09002 * 109.47398 * 300.00078 * 22 21 19 44 44 H 1.09001 * 109.47194 * 60.00258 * 22 21 19 45 45 H 1.09002 * 109.47153 * 300.00319 * 23 22 21 46 46 H 1.08998 * 109.47533 * 59.99948 * 23 22 21 47 47 H 1.08000 * 125.88602 * 359.95130 * 25 24 23 48 48 H 1.08005 * 126.29032 * 180.15800 * 26 25 24 49 49 H 1.08001 * 126.28917 * 179.73956 * 27 26 25 50 50 H 1.07995 * 125.89464 * 180.02562 * 28 27 26 51 51 H 1.09005 * 109.58150 * 66.42780 * 29 18 17 52 52 H 1.08996 * 109.58821 * 186.85442 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0182 -0.6906 1.1962 5 6 2.1491 -0.0073 2.3758 6 1 1.8920 1.0405 2.4243 7 6 2.6122 -0.6615 3.5091 8 7 2.9260 -1.9384 3.4499 9 14 2.7900 0.2703 5.1183 10 1 1.5224 0.1783 5.8863 11 1 3.8950 -0.3224 5.9139 12 1 3.0942 1.6957 4.8338 13 6 2.0400 -0.7214 -1.2492 14 1 1.6783 -1.7497 -1.2492 15 6 3.5704 -0.7183 -1.2518 16 6 4.0816 -1.4681 -2.4840 17 6 3.5942 -0.7600 -3.7468 18 7 2.1324 -0.6249 -3.6856 19 6 1.3588 -1.0708 -4.6951 20 8 0.1530 -0.9581 -4.6304 21 6 1.9920 -1.7098 -5.9042 22 6 0.9001 -2.1246 -6.8924 23 6 1.5430 -2.7727 -8.1202 24 7 0.4976 -3.1694 -9.0668 25 6 -0.1315 -4.3787 -9.0947 26 6 -1.0296 -4.3636 -10.1005 27 6 -0.9453 -3.1021 -10.7222 28 6 -0.0029 -2.3923 -10.0691 29 6 1.5297 0.0002 -2.5004 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5140 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 2.2490 -1.6318 1.1528 34 1 3.2499 -2.3954 4.2418 35 1 3.9314 0.3099 -1.2767 36 1 3.9361 -1.2095 -0.3501 37 1 5.1715 -1.4857 -2.4731 38 1 3.7007 -2.4893 -2.4725 39 1 3.8705 -1.3467 -4.6228 40 1 4.0503 0.2281 -3.8075 41 1 2.5564 -2.5900 -5.5963 42 1 2.6633 -0.9966 -6.3823 43 1 0.2290 -2.8380 -6.4140 44 1 0.3353 -1.2447 -7.2004 45 1 2.2138 -2.0590 -8.5984 46 1 2.1081 -3.6526 -7.8127 47 1 0.0558 -5.2054 -8.4254 48 1 -1.6891 -5.1717 -10.3809 49 1 -1.5283 -2.7655 -11.5667 50 1 0.3023 -1.3824 -10.2998 51 1 1.8141 1.0516 -2.4574 52 1 0.4444 -0.0850 -2.5544 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715457774.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:33:57 Heat of formation + Delta-G solvation = 11.040963 kcal Electronic energy + Delta-G solvation = -28484.893120 eV Core-core repulsion = 24677.895826 eV Total energy + Delta-G solvation = -3806.997294 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.33011 -40.33248 -37.98816 -35.52346 -35.29180 -32.86574 -32.07302 -31.61324 -30.01778 -28.97822 -28.04053 -27.19205 -25.02969 -24.30486 -23.04763 -22.36998 -20.91300 -20.67719 -20.19597 -19.60992 -18.95661 -17.78575 -17.23894 -16.96165 -16.19537 -15.91099 -14.94928 -14.86046 -14.78417 -14.28063 -14.18617 -13.93643 -13.80524 -13.56302 -13.36736 -13.26040 -13.08792 -12.76358 -12.59967 -12.46300 -12.28771 -12.24927 -12.17425 -12.11366 -11.93358 -11.41731 -11.24859 -11.15330 -10.92917 -10.85097 -10.74324 -10.49070 -10.21111 -10.15421 -9.97195 -9.69875 -9.62152 -8.90769 -8.82821 -8.61107 -8.36520 -6.95926 -5.77570 -3.05606 2.05795 2.53304 2.64497 2.87029 2.97630 3.42214 3.47724 3.48822 4.19971 4.26605 4.48711 4.57619 4.68751 4.77706 4.79500 4.84151 4.97141 4.99092 5.00777 5.07987 5.11811 5.20428 5.33778 5.35073 5.44031 5.47430 5.55356 5.59465 5.61467 5.82105 5.83490 5.85546 5.93071 5.97993 6.08624 6.10373 6.11423 6.19017 6.22948 6.46097 6.49816 6.56272 6.67637 6.78774 6.79292 6.92612 7.02253 7.12388 7.16161 7.35840 7.69610 8.09932 8.41134 9.52399 10.10288 10.45265 11.45087 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.027439 B = 0.001870 C = 0.001842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.217487 B =14966.343596 C =15200.701182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.180 3.820 3 H 0.047 0.953 4 N -0.721 5.721 5 C -0.235 4.235 6 H 0.069 0.931 7 C -0.014 4.014 8 N -0.934 5.934 9 Si 0.905 3.095 10 H -0.291 1.291 11 H -0.292 1.292 12 H -0.283 1.283 13 C -0.102 4.102 14 H 0.069 0.931 15 C -0.110 4.110 16 C -0.136 4.136 17 C 0.106 3.894 18 N -0.608 5.608 19 C 0.512 3.488 20 O -0.542 6.542 21 C -0.137 4.137 22 C -0.120 4.120 23 C 0.105 3.895 24 N -0.447 5.447 25 C -0.015 4.015 26 C -0.205 4.205 27 C -0.204 4.204 28 C -0.016 4.016 29 C 0.116 3.884 30 H 0.046 0.954 31 H 0.053 0.947 32 H 0.038 0.962 33 H 0.383 0.617 34 H 0.254 0.746 35 H 0.059 0.941 36 H 0.084 0.916 37 H 0.073 0.927 38 H 0.064 0.936 39 H 0.079 0.921 40 H 0.069 0.931 41 H 0.096 0.904 42 H 0.095 0.905 43 H 0.079 0.921 44 H 0.078 0.922 45 H 0.089 0.911 46 H 0.090 0.910 47 H 0.159 0.841 48 H 0.133 0.867 49 H 0.133 0.867 50 H 0.159 0.841 51 H 0.066 0.934 52 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.753 -1.158 -26.683 26.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.070 3.930 3 H 0.065 0.935 4 N -0.362 5.362 5 C -0.366 4.366 6 H 0.087 0.913 7 C -0.210 4.210 8 N -0.582 5.582 9 Si 0.736 3.264 10 H -0.218 1.218 11 H -0.219 1.219 12 H -0.208 1.208 13 C -0.122 4.122 14 H 0.087 0.913 15 C -0.147 4.147 16 C -0.174 4.174 17 C -0.016 4.016 18 N -0.341 5.341 19 C 0.300 3.700 20 O -0.420 6.420 21 C -0.178 4.178 22 C -0.159 4.159 23 C -0.017 4.017 24 N -0.122 5.122 25 C -0.145 4.145 26 C -0.229 4.229 27 C -0.229 4.229 28 C -0.146 4.146 29 C -0.006 4.006 30 H 0.065 0.935 31 H 0.072 0.928 32 H 0.057 0.943 33 H 0.217 0.783 34 H 0.064 0.936 35 H 0.078 0.922 36 H 0.102 0.898 37 H 0.092 0.908 38 H 0.083 0.917 39 H 0.098 0.902 40 H 0.087 0.913 41 H 0.114 0.886 42 H 0.113 0.887 43 H 0.097 0.903 44 H 0.096 0.904 45 H 0.107 0.893 46 H 0.108 0.892 47 H 0.177 0.823 48 H 0.151 0.849 49 H 0.151 0.849 50 H 0.176 0.824 51 H 0.084 0.916 52 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 1.413 -0.861 -26.262 26.314 hybrid contribution 0.240 0.123 1.109 1.141 sum 1.653 -0.738 -25.153 25.218 Atomic orbital electron populations 1.22514 0.99353 1.00962 0.99977 1.20158 0.91683 0.95253 0.85905 0.93508 1.42390 1.78077 1.10616 1.05158 1.19231 1.36173 0.93849 0.87348 0.91257 1.24717 1.02358 0.95975 0.97977 1.69659 1.51098 1.08669 1.28794 0.86219 0.77270 0.78779 0.84099 1.21811 1.21856 1.20831 1.21750 0.95863 1.00346 0.94289 0.91258 1.21499 0.94966 1.00485 0.97797 1.21887 1.00720 0.99953 0.94887 1.21713 0.79755 1.01046 0.99133 1.48183 1.07040 1.59788 1.19131 1.20506 0.87126 0.78292 0.84049 1.90715 1.14366 1.56840 1.80046 1.21600 0.99423 1.02095 0.94665 1.21716 0.97896 1.02365 0.93877 1.21900 0.88937 1.01321 0.89578 1.44135 1.30795 1.12198 1.25079 1.21851 0.99649 0.89599 1.03359 1.20903 1.03290 0.98950 0.99779 1.20897 1.02783 0.95615 1.03615 1.21824 1.01294 0.97981 0.93493 1.21782 0.99644 0.95974 0.83175 0.93528 0.92832 0.94300 0.78319 0.93598 0.92235 0.89781 0.90840 0.91700 0.90225 0.91291 0.88581 0.88716 0.90268 0.90361 0.89253 0.89178 0.82338 0.84915 0.84942 0.82405 0.91620 0.88782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.11 9.14 37.16 0.34 -2.77 16 2 C 0.18 3.46 2.47 -67.93 -0.17 3.30 16 3 H 0.05 0.91 8.08 -51.93 -0.42 0.50 16 4 N -0.72 -17.39 4.41 -53.42 -0.24 -17.62 16 5 C -0.23 -6.36 9.93 -15.06 -0.15 -6.51 16 6 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 7 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 8 N -0.93 -27.70 13.06 55.49 0.72 -26.97 16 9 Si 0.90 22.18 29.55 -169.99 -5.02 17.15 16 10 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 11 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 12 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 13 C -0.10 -1.62 1.97 -90.50 -0.18 -1.80 16 14 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 15 C -0.11 -1.61 5.03 -26.69 -0.13 -1.74 16 16 C -0.14 -1.47 6.06 -26.83 -0.16 -1.63 16 17 C 0.11 0.94 6.31 -3.93 -0.02 0.92 16 18 N -0.61 -7.18 2.98 -173.03 -0.52 -7.69 16 19 C 0.51 6.23 7.70 -10.98 -0.08 6.14 16 20 O -0.54 -8.88 15.39 5.56 0.09 -8.79 16 21 C -0.14 -0.99 4.05 -27.88 -0.11 -1.10 16 22 C -0.12 -0.96 4.83 -26.73 -0.13 -1.09 16 23 C 0.10 0.62 6.09 -4.04 -0.02 0.59 16 24 N -0.45 -3.82 2.75 -117.13 -0.32 -4.14 16 25 C -0.01 -0.13 11.43 -16.75 -0.19 -0.33 16 26 C -0.20 -1.98 10.86 -39.78 -0.43 -2.41 16 27 C -0.20 -1.95 10.86 -39.78 -0.43 -2.38 16 28 C -0.02 -0.14 11.43 -16.75 -0.19 -0.34 16 29 C 0.12 1.63 5.19 -3.71 -0.02 1.61 16 30 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 31 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 32 H 0.04 0.62 6.56 -51.93 -0.34 0.28 16 33 H 0.38 9.88 7.59 -40.82 -0.31 9.57 16 34 H 0.25 7.34 8.31 -40.82 -0.34 7.01 16 35 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.08 1.51 7.42 -51.93 -0.39 1.12 16 37 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.08 0.48 5.93 -51.93 -0.31 0.17 16 40 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.10 0.53 7.68 -51.93 -0.40 0.13 16 42 H 0.09 0.46 7.95 -51.93 -0.41 0.05 16 43 H 0.08 0.80 8.10 -51.93 -0.42 0.38 16 44 H 0.08 0.76 8.10 -51.93 -0.42 0.34 16 45 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 46 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 47 H 0.16 1.10 8.06 -52.49 -0.42 0.68 16 48 H 0.13 1.08 8.06 -52.48 -0.42 0.66 16 49 H 0.13 1.06 8.06 -52.49 -0.42 0.63 16 50 H 0.16 1.02 8.06 -52.49 -0.42 0.60 16 51 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 52 H 0.09 1.48 5.62 -51.93 -0.29 1.18 16 LS Contribution 411.16 15.07 6.20 6.20 Total: -1.00 -33.24 411.16 -10.46 -43.70 By element: Atomic # 1 Polarization: 17.39 SS G_CDS: -9.17 Total: 8.22 kcal Atomic # 6 Polarization: -7.85 SS G_CDS: -2.19 Total: -10.04 kcal Atomic # 7 Polarization: -56.08 SS G_CDS: -0.35 Total: -56.43 kcal Atomic # 8 Polarization: -8.88 SS G_CDS: 0.09 Total: -8.79 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -33.24 -10.46 -43.70 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715457774.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.740 kcal (2) G-P(sol) polarization free energy of solvation -33.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.699 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds