Wall clock time and date at job start Tue Mar 31 2020 17:33:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47318 * 2 1 4 4 N 1.46502 * 109.46636 * 119.99823 * 2 1 3 5 5 C 1.36945 * 119.99738 * 274.99276 * 4 2 1 6 6 H 1.08001 * 119.99847 * 0.02562 * 5 4 2 7 7 C 1.38810 * 119.99685 * 180.02562 * 5 4 2 8 8 N 1.31620 * 120.00163 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 119.99811 * 180.02562 * 7 5 4 10 10 H 1.48493 * 109.47432 * 89.99967 * 9 7 5 11 11 H 1.48506 * 109.46660 * 210.00170 * 9 7 5 12 12 H 1.48499 * 109.46807 * 329.99577 * 9 7 5 13 13 C 1.53001 * 109.47003 * 239.99428 * 2 1 3 14 14 H 1.09003 * 109.52339 * 299.91757 * 13 2 1 15 15 C 1.53037 * 109.49539 * 179.84222 * 13 2 1 16 16 C 1.53038 * 109.53876 * 178.68529 * 15 13 2 17 17 C 1.52764 * 109.38398 * 61.23747 * 16 15 13 18 18 N 1.46927 * 109.00591 * 305.59101 * 17 16 15 19 19 C 1.34777 * 120.62690 * 233.58001 * 18 17 16 20 20 O 1.21278 * 119.99854 * 179.71790 * 19 18 17 21 21 C 1.50703 * 120.00161 * 359.72483 * 19 18 17 22 22 C 1.53000 * 109.46912 * 179.97438 * 21 19 18 23 23 C 1.52997 * 109.47060 * 179.97438 * 22 21 19 24 24 N 1.46500 * 109.47473 * 180.02562 * 23 22 21 25 25 C 1.36341 * 125.63785 * 269.69842 * 24 23 22 26 26 C 1.34849 * 108.21665 * 179.82817 * 25 24 23 27 27 C 1.40888 * 107.41794 * 0.42143 * 26 25 24 28 28 C 1.34847 * 107.41968 * 359.74118 * 27 26 25 29 29 C 1.46923 * 118.74168 * 53.30853 * 18 17 16 30 30 H 1.08993 * 109.47309 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.47096 * 300.00556 * 1 2 3 32 32 H 1.08999 * 109.46944 * 60.00248 * 1 2 3 33 33 H 0.97003 * 120.00389 * 95.00402 * 4 2 1 34 34 H 0.97002 * 119.99705 * 179.97438 * 8 7 5 35 35 H 1.08999 * 109.46135 * 298.70260 * 15 13 2 36 36 H 1.08998 * 109.46529 * 58.66075 * 15 13 2 37 37 H 1.09005 * 109.50245 * 181.31520 * 16 15 13 38 38 H 1.09000 * 109.49759 * 301.41324 * 16 15 13 39 39 H 1.08994 * 109.51034 * 185.70660 * 17 16 15 40 40 H 1.08998 * 109.42924 * 65.42828 * 17 16 15 41 41 H 1.09001 * 109.46980 * 59.99654 * 21 19 18 42 42 H 1.08992 * 109.47158 * 299.99760 * 21 19 18 43 43 H 1.09002 * 109.47398 * 300.00078 * 22 21 19 44 44 H 1.09001 * 109.47194 * 60.00258 * 22 21 19 45 45 H 1.09002 * 109.47153 * 300.00319 * 23 22 21 46 46 H 1.08998 * 109.47533 * 59.99948 * 23 22 21 47 47 H 1.08000 * 125.88602 * 359.95130 * 25 24 23 48 48 H 1.08005 * 126.29032 * 180.15800 * 26 25 24 49 49 H 1.08001 * 126.28917 * 179.73956 * 27 26 25 50 50 H 1.07995 * 125.89464 * 180.02562 * 28 27 26 51 51 H 1.09005 * 109.58150 * 66.42780 * 29 18 17 52 52 H 1.08996 * 109.58821 * 186.85442 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0182 -0.6906 1.1962 5 6 2.1491 -0.0073 2.3758 6 1 1.8920 1.0405 2.4243 7 6 2.6122 -0.6615 3.5091 8 7 2.9260 -1.9384 3.4499 9 14 2.7900 0.2703 5.1183 10 1 1.5224 0.1783 5.8863 11 1 3.8950 -0.3224 5.9139 12 1 3.0942 1.6957 4.8338 13 6 2.0400 -0.7214 -1.2492 14 1 1.6783 -1.7497 -1.2492 15 6 3.5704 -0.7183 -1.2518 16 6 4.0816 -1.4681 -2.4840 17 6 3.5942 -0.7600 -3.7468 18 7 2.1324 -0.6249 -3.6856 19 6 1.3588 -1.0708 -4.6951 20 8 0.1530 -0.9581 -4.6304 21 6 1.9920 -1.7098 -5.9042 22 6 0.9001 -2.1246 -6.8924 23 6 1.5430 -2.7727 -8.1202 24 7 0.4976 -3.1694 -9.0668 25 6 -0.1315 -4.3787 -9.0947 26 6 -1.0296 -4.3636 -10.1005 27 6 -0.9453 -3.1021 -10.7222 28 6 -0.0029 -2.3923 -10.0691 29 6 1.5297 0.0002 -2.5004 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5140 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 2.2490 -1.6318 1.1528 34 1 3.2499 -2.3954 4.2418 35 1 3.9314 0.3099 -1.2767 36 1 3.9361 -1.2095 -0.3501 37 1 5.1715 -1.4857 -2.4731 38 1 3.7007 -2.4893 -2.4725 39 1 3.8705 -1.3467 -4.6228 40 1 4.0503 0.2281 -3.8075 41 1 2.5564 -2.5900 -5.5963 42 1 2.6633 -0.9966 -6.3823 43 1 0.2290 -2.8380 -6.4140 44 1 0.3353 -1.2447 -7.2004 45 1 2.2138 -2.0590 -8.5984 46 1 2.1081 -3.6526 -7.8127 47 1 0.0558 -5.2054 -8.4254 48 1 -1.6891 -5.1717 -10.3809 49 1 -1.5283 -2.7655 -11.5667 50 1 0.3023 -1.3824 -10.2998 51 1 1.8141 1.0516 -2.4574 52 1 0.4444 -0.0850 -2.5544 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715457774.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:33:56 Heat of formation + Delta-G solvation = -7.375842 kcal Electronic energy + Delta-G solvation = -28485.691733 eV Core-core repulsion = 24677.895826 eV Total energy + Delta-G solvation = -3807.795907 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.94535 -41.30244 -39.18137 -36.96661 -35.92439 -34.54706 -33.24168 -32.41722 -31.50772 -29.61052 -29.59513 -27.95726 -26.26004 -25.71032 -24.37091 -23.16624 -22.05625 -21.31960 -21.07669 -20.79500 -19.85077 -19.18708 -18.46715 -17.84807 -17.04723 -16.91637 -16.46260 -15.89033 -15.52726 -15.49176 -15.33799 -15.23543 -14.91281 -14.60730 -14.54552 -14.18805 -14.05518 -13.89609 -13.80644 -13.57034 -13.27718 -13.05085 -12.96419 -12.91667 -12.83016 -12.75099 -12.61765 -12.49100 -12.38205 -12.14664 -11.92934 -11.85004 -11.78739 -11.62615 -11.40877 -11.25667 -10.90988 -10.75365 -9.61112 -9.47543 -9.02138 -8.99387 -7.92872 -5.20244 1.41086 1.46594 1.47983 1.55952 1.64520 1.96922 2.17942 2.23674 2.56644 3.40635 3.48854 3.75526 3.77735 3.82442 3.91221 3.99558 4.10381 4.21038 4.27341 4.30307 4.34608 4.36114 4.42659 4.42941 4.53925 4.58426 4.59667 4.65992 4.72839 4.73908 4.81104 4.83755 4.87034 4.90980 5.00791 5.02147 5.05023 5.16216 5.23662 5.28596 5.42812 5.43468 5.47254 5.47386 5.52106 5.55748 5.63306 6.12725 6.29054 6.37482 6.47682 6.59078 7.19735 7.35382 8.11506 8.35352 9.30499 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.027439 B = 0.001870 C = 0.001842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.217487 B =14966.343596 C =15200.701182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.175 3.825 3 H 0.048 0.952 4 N -0.730 5.730 5 C -0.233 4.233 6 H 0.074 0.926 7 C -0.076 4.076 8 N -0.969 5.969 9 Si 0.968 3.032 10 H -0.292 1.292 11 H -0.296 1.296 12 H -0.269 1.269 13 C -0.089 4.089 14 H 0.048 0.952 15 C -0.107 4.107 16 C -0.130 4.130 17 C 0.106 3.894 18 N -0.609 5.609 19 C 0.504 3.496 20 O -0.595 6.595 21 C -0.126 4.126 22 C -0.112 4.112 23 C 0.106 3.894 24 N -0.450 5.450 25 C -0.026 4.026 26 C -0.230 4.230 27 C -0.230 4.230 28 C -0.023 4.023 29 C 0.124 3.876 30 H 0.033 0.967 31 H 0.037 0.963 32 H 0.065 0.935 33 H 0.371 0.629 34 H 0.249 0.751 35 H 0.063 0.937 36 H 0.043 0.957 37 H 0.096 0.904 38 H 0.057 0.943 39 H 0.123 0.877 40 H 0.086 0.914 41 H 0.125 0.875 42 H 0.133 0.867 43 H 0.049 0.951 44 H 0.055 0.945 45 H 0.117 0.883 46 H 0.112 0.888 47 H 0.176 0.824 48 H 0.138 0.862 49 H 0.139 0.861 50 H 0.180 0.820 51 H 0.077 0.923 52 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.864 -0.160 -28.722 28.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.066 3.934 3 H 0.066 0.934 4 N -0.370 5.370 5 C -0.365 4.365 6 H 0.092 0.908 7 C -0.268 4.268 8 N -0.620 5.620 9 Si 0.798 3.202 10 H -0.220 1.220 11 H -0.223 1.223 12 H -0.194 1.194 13 C -0.109 4.109 14 H 0.067 0.933 15 C -0.145 4.145 16 C -0.168 4.168 17 C -0.015 4.015 18 N -0.341 5.341 19 C 0.294 3.706 20 O -0.476 6.476 21 C -0.166 4.166 22 C -0.151 4.151 23 C -0.014 4.014 24 N -0.125 5.125 25 C -0.156 4.156 26 C -0.254 4.254 27 C -0.254 4.254 28 C -0.153 4.153 29 C 0.001 3.999 30 H 0.052 0.948 31 H 0.056 0.944 32 H 0.084 0.916 33 H 0.203 0.797 34 H 0.058 0.942 35 H 0.082 0.918 36 H 0.062 0.938 37 H 0.114 0.886 38 H 0.076 0.924 39 H 0.141 0.859 40 H 0.104 0.896 41 H 0.143 0.857 42 H 0.151 0.849 43 H 0.068 0.932 44 H 0.074 0.926 45 H 0.135 0.865 46 H 0.130 0.870 47 H 0.193 0.807 48 H 0.156 0.844 49 H 0.157 0.843 50 H 0.198 0.802 51 H 0.095 0.905 52 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 3.541 0.171 -28.334 28.555 hybrid contribution -0.480 -0.159 1.713 1.786 sum 3.062 0.013 -26.621 26.797 Atomic orbital electron populations 1.22382 0.98719 1.00287 1.00465 1.20374 0.91961 0.95223 0.85806 0.93419 1.42541 1.78219 1.10158 1.06032 1.19590 1.34452 0.94102 0.88356 0.90840 1.25482 1.03266 0.96871 1.01206 1.69815 1.52825 1.10155 1.29223 0.85208 0.76694 0.78155 0.80131 1.21953 1.22274 1.19407 1.21538 0.96869 0.98806 0.93667 0.93305 1.21418 0.93760 1.00905 0.98371 1.21845 1.02026 0.99081 0.93829 1.21981 0.77489 1.02574 0.99469 1.48287 1.08481 1.59253 1.18107 1.21463 0.86611 0.77419 0.85108 1.90699 1.16883 1.58815 1.81192 1.21651 0.99270 1.03611 0.92064 1.21583 0.97810 1.00797 0.94882 1.22075 0.88330 1.02791 0.88241 1.44368 1.31105 1.11851 1.25210 1.22206 0.99562 0.90464 1.03413 1.21187 1.04122 0.99505 1.00605 1.21187 1.03736 0.96034 1.04482 1.22239 1.00918 0.98813 0.93310 1.21488 0.98594 0.96466 0.83389 0.94766 0.94413 0.91638 0.79700 0.94215 0.91830 0.93776 0.88573 0.92414 0.85939 0.89558 0.85745 0.84913 0.93224 0.92589 0.86502 0.87015 0.80706 0.84440 0.84281 0.80250 0.90473 0.90838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.96 9.14 71.98 0.66 -5.31 16 2 C 0.18 6.83 2.47 44.99 0.11 6.94 16 3 H 0.05 1.86 8.08 -2.39 -0.02 1.84 16 4 N -0.73 -36.19 4.41 -322.93 -1.42 -37.61 16 5 C -0.23 -12.79 9.93 84.03 0.83 -11.96 16 6 H 0.07 3.90 7.83 -2.91 -0.02 3.88 16 7 C -0.08 -4.35 5.50 84.86 0.47 -3.88 16 8 N -0.97 -58.98 13.06 21.65 0.28 -58.70 16 9 Si 0.97 46.11 29.55 68.60 2.03 48.13 16 10 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 11 H -0.30 -14.18 7.11 99.48 0.71 -13.47 16 12 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 13 C -0.09 -2.81 1.97 -10.72 -0.02 -2.84 16 14 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 15 C -0.11 -3.06 5.03 30.62 0.15 -2.91 16 16 C -0.13 -2.44 6.06 30.53 0.19 -2.25 16 17 C 0.11 1.40 6.31 86.22 0.54 1.95 16 18 N -0.61 -12.79 2.98 -819.75 -2.44 -15.23 16 19 C 0.50 11.14 7.70 87.66 0.67 11.81 16 20 O -0.59 -19.42 15.39 -3.02 -0.05 -19.46 16 21 C -0.13 -1.29 4.05 29.85 0.12 -1.17 16 22 C -0.11 -1.53 4.83 30.59 0.15 -1.39 16 23 C 0.11 0.87 6.09 86.38 0.53 1.40 16 24 N -0.45 -6.83 2.75 -524.49 -1.44 -8.27 16 25 C -0.03 -0.45 11.43 83.21 0.95 0.50 16 26 C -0.23 -4.42 10.86 22.14 0.24 -4.18 16 27 C -0.23 -4.32 10.86 22.14 0.24 -4.08 16 28 C -0.02 -0.37 11.43 83.21 0.95 0.58 16 29 C 0.12 3.35 5.19 86.36 0.45 3.79 16 30 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.04 1.50 8.14 -2.38 -0.02 1.48 16 32 H 0.06 2.09 6.56 -2.39 -0.02 2.08 16 33 H 0.37 19.98 7.59 -92.71 -0.70 19.28 16 34 H 0.25 14.77 8.31 -92.71 -0.77 14.00 16 35 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 36 H 0.04 1.62 7.42 -2.39 -0.02 1.60 16 37 H 0.10 1.43 8.14 -2.38 -0.02 1.41 16 38 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.12 0.65 5.93 -2.39 -0.01 0.63 16 40 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 41 H 0.12 0.66 7.68 -2.39 -0.02 0.64 16 42 H 0.13 0.44 7.95 -2.39 -0.02 0.42 16 43 H 0.05 0.97 8.10 -2.39 -0.02 0.95 16 44 H 0.06 1.02 8.10 -2.39 -0.02 1.00 16 45 H 0.12 0.38 8.14 -2.39 -0.02 0.36 16 46 H 0.11 0.49 8.14 -2.39 -0.02 0.47 16 47 H 0.18 2.21 8.06 -2.91 -0.02 2.18 16 48 H 0.14 2.30 8.06 -2.91 -0.02 2.28 16 49 H 0.14 2.22 8.06 -2.91 -0.02 2.20 16 50 H 0.18 1.93 8.06 -2.91 -0.02 1.90 16 51 H 0.08 1.90 8.14 -2.38 -0.02 1.89 16 52 H 0.07 2.31 5.62 -2.39 -0.01 2.29 16 Total: -1.00 -76.85 411.16 4.37 -72.48 By element: Atomic # 1 Polarization: 31.47 SS G_CDS: 0.18 Total: 31.64 kcal Atomic # 6 Polarization: -20.21 SS G_CDS: 7.23 Total: -12.98 kcal Atomic # 7 Polarization: -114.79 SS G_CDS: -5.02 Total: -119.82 kcal Atomic # 8 Polarization: -19.42 SS G_CDS: -0.05 Total: -19.46 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 2.03 Total: 48.13 kcal Total: -76.85 4.37 -72.48 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715457774.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.108 kcal (2) G-P(sol) polarization free energy of solvation -76.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds