Wall clock time and date at job start Tue Mar 31 2020 17:59:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46500 * 109.47198 * 2 1 4 4 C 1.36443 * 124.85404 * 265.02809 * 3 2 1 5 5 C 1.34486 * 108.85776 * 179.68580 * 4 3 2 6 6 C 1.46684 * 106.33468 * 0.43425 * 5 4 3 7 7 C 1.47261 * 126.94856 * 179.82738 * 6 5 4 8 8 O 1.21629 * 120.00078 * 150.23108 * 7 6 5 9 9 N 1.34775 * 119.99815 * 330.24190 * 7 6 5 10 10 C 1.46924 * 120.63108 * 3.36149 * 9 7 6 11 11 C 1.53189 * 108.89758 * 233.67948 * 10 9 7 12 12 C 1.53045 * 109.30766 * 305.29259 * 11 10 9 13 13 C 1.53041 * 109.53688 * 61.36747 * 12 11 10 14 14 H 1.08996 * 109.49902 * 58.58408 * 13 12 11 15 15 C 1.53005 * 109.49465 * 178.65142 * 13 12 11 16 16 C 1.47199 * 120.81525 * 183.50229 * 9 7 6 17 17 H 1.08999 * 109.68231 * 246.22907 * 16 9 7 18 18 C 1.53002 * 109.53431 * 6.53900 * 16 9 7 19 19 N 1.46501 * 109.46892 * 287.88961 * 18 16 9 20 20 C 1.36936 * 120.00128 * 185.95053 * 19 18 16 21 21 H 1.08002 * 120.00084 * 0.02562 * 20 19 18 22 22 C 1.38809 * 120.00230 * 180.02562 * 20 19 18 23 23 N 1.31622 * 119.99919 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 119.99975 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47337 * 359.97438 * 24 22 20 26 26 H 1.48503 * 109.47359 * 120.00028 * 24 22 20 27 27 H 1.48509 * 109.46826 * 239.99820 * 24 22 20 28 28 C 1.34660 * 124.84958 * 84.99454 * 3 2 1 29 29 C 1.50698 * 125.80159 * 0.05152 * 28 3 2 30 30 H 1.09004 * 109.47054 * 60.00293 * 1 2 3 31 31 H 1.09004 * 109.46873 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47694 * 299.99594 * 1 2 3 33 33 H 1.09004 * 109.47262 * 240.00337 * 2 1 3 34 34 H 1.09000 * 109.47509 * 119.99848 * 2 1 3 35 35 H 1.08008 * 125.57045 * 359.97019 * 4 3 2 36 36 H 1.08006 * 126.83238 * 180.26183 * 5 4 3 37 37 H 1.09005 * 109.58886 * 113.81718 * 10 9 7 38 38 H 1.09005 * 109.58654 * 353.54059 * 10 9 7 39 39 H 1.08993 * 109.49884 * 65.23994 * 11 10 9 40 40 H 1.08994 * 109.50281 * 185.34261 * 11 10 9 41 41 H 1.09002 * 109.45707 * 181.38055 * 12 11 10 42 42 H 1.08995 * 109.46153 * 301.34384 * 12 11 10 43 43 H 1.08998 * 109.47199 * 60.00038 * 15 13 12 44 44 H 1.09003 * 109.46734 * 179.97438 * 15 13 12 45 45 H 1.08997 * 109.46970 * 299.99166 * 15 13 12 46 46 H 1.08994 * 109.47040 * 47.88786 * 18 16 9 47 47 H 1.08995 * 109.47388 * 167.89217 * 18 16 9 48 48 H 0.97001 * 120.00060 * 5.96424 * 19 18 16 49 49 H 0.97000 * 119.99958 * 179.97438 * 23 22 20 50 50 H 1.09005 * 109.47025 * 269.99746 * 29 28 3 51 51 H 1.09001 * 109.47501 * 29.99417 * 29 28 3 52 52 H 1.08996 * 109.47296 * 149.99863 * 29 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3697 2.0840 -1.1154 5 6 2.7638 3.3159 -0.7469 6 6 2.6525 3.3645 0.7150 7 6 2.9743 4.5045 1.5898 8 8 2.3781 4.6528 2.6395 9 7 3.9292 5.3837 1.2271 10 6 4.6065 5.2602 -0.0709 11 6 6.1205 5.2309 0.1603 12 6 6.5333 6.4646 0.9665 13 6 5.8361 6.4426 2.3287 14 1 6.1052 5.5300 2.8604 15 6 6.2754 7.6587 3.1468 16 6 4.3188 6.4856 2.1220 17 1 4.0379 7.4389 1.6743 18 6 3.6128 6.3241 3.4697 19 7 2.1897 6.6361 3.3160 20 6 1.3754 6.6789 4.4161 21 1 1.7823 6.4832 5.3971 22 6 0.0269 6.9740 4.2703 23 7 -0.4692 7.2121 3.0747 24 14 -1.0838 7.0331 5.7711 25 1 -0.2883 6.7302 6.9879 26 1 -1.6794 8.3880 5.8932 27 1 -2.1669 6.0276 5.6253 28 6 2.1839 2.1388 1.1009 29 6 1.9015 1.7091 2.5174 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5137 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 2.3327 1.7133 -2.1292 36 1 3.0986 4.1103 -1.3975 37 1 4.3493 6.1126 -0.6998 38 1 4.2936 4.3377 -0.5600 39 1 6.3869 4.3297 0.7125 40 1 6.6355 5.2351 -0.8003 41 1 7.6136 6.4589 1.1114 42 1 6.2444 7.3655 0.4252 43 1 6.0051 8.5711 2.6153 44 1 5.7782 7.6428 4.1168 45 1 7.3553 7.6286 3.2912 46 1 3.7241 5.2971 3.8174 47 1 4.0573 7.0040 4.1965 48 1 1.8242 6.8121 2.4349 49 1 -1.4117 7.4179 2.9728 50 1 0.8679 1.9461 2.7698 51 1 2.0609 0.6347 2.6099 52 1 2.5714 2.2356 3.1972 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715472222.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:59:29 Heat of formation + Delta-G solvation = 69.957167 kcal Electronic energy + Delta-G solvation = -31080.050066 eV Core-core repulsion = 27275.607570 eV Total energy + Delta-G solvation = -3804.442496 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.25298 -39.64201 -36.84131 -34.75434 -33.79186 -33.15413 -31.90433 -31.29362 -30.08100 -29.31217 -26.97396 -26.18219 -25.52996 -24.07368 -23.45937 -22.36633 -21.27283 -20.93328 -19.96809 -19.28809 -17.85116 -16.99094 -16.52519 -15.78815 -15.30461 -15.02504 -14.72356 -14.57308 -14.53940 -14.13051 -13.70631 -13.55324 -13.35279 -13.22145 -12.85919 -12.82785 -12.55088 -12.53034 -12.45963 -12.28361 -12.11607 -11.87916 -11.80098 -11.72789 -11.45289 -11.42845 -11.24837 -11.18069 -10.77027 -10.70783 -10.61400 -10.42823 -10.23003 -9.99613 -9.62267 -9.35677 -8.55006 -8.34933 -8.11347 -7.78621 -7.72126 -6.31608 -5.39960 -2.58226 2.28420 2.70065 2.93929 3.61751 3.66519 3.69113 3.75072 4.19826 4.50747 4.80673 4.86437 4.88696 4.93359 5.00122 5.06244 5.07233 5.14043 5.27299 5.40391 5.40904 5.47479 5.54524 5.62217 5.70366 5.78177 5.78321 5.86308 5.89293 5.92412 5.95025 5.97181 6.01603 6.05016 6.09426 6.18958 6.23976 6.25591 6.30735 6.34826 6.42724 6.49776 6.60934 6.78118 6.90779 7.07661 7.14352 7.33233 7.47608 7.52891 7.99603 8.32062 8.78103 9.33442 9.89403 10.53550 10.87908 11.84350 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.007731 B = 0.005735 C = 0.003588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3620.834085 B = 4881.353747 C = 7802.321408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.099 3.901 3 N -0.445 5.445 4 C -0.023 4.023 5 C -0.181 4.181 6 C -0.208 4.208 7 C 0.547 3.453 8 O -0.449 6.449 9 N -0.609 5.609 10 C 0.085 3.915 11 C -0.132 4.132 12 C -0.113 4.113 13 C -0.098 4.098 14 H 0.070 0.930 15 C -0.146 4.146 16 C 0.149 3.851 17 H 0.065 0.935 18 C 0.163 3.837 19 N -0.693 5.693 20 C -0.199 4.199 21 H 0.063 0.937 22 C -0.024 4.024 23 N -0.937 5.937 24 Si 0.897 3.103 25 H -0.284 1.284 26 H -0.297 1.297 27 H -0.297 1.297 28 C 0.090 3.910 29 C -0.083 4.083 30 H 0.063 0.937 31 H 0.071 0.929 32 H 0.066 0.934 33 H 0.088 0.912 34 H 0.086 0.914 35 H 0.160 0.840 36 H 0.150 0.850 37 H 0.055 0.945 38 H 0.111 0.889 39 H 0.062 0.938 40 H 0.065 0.935 41 H 0.058 0.942 42 H 0.061 0.939 43 H 0.054 0.946 44 H 0.065 0.935 45 H 0.050 0.950 46 H 0.032 0.968 47 H 0.017 0.983 48 H 0.380 0.620 49 H 0.247 0.753 50 H 0.079 0.921 51 H 0.054 0.946 52 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.970 -13.227 -11.273 21.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.022 4.022 3 N -0.123 5.123 4 C -0.149 4.149 5 C -0.206 4.206 6 C -0.217 4.217 7 C 0.334 3.666 8 O -0.319 6.319 9 N -0.346 5.346 10 C -0.038 4.038 11 C -0.171 4.171 12 C -0.150 4.150 13 C -0.118 4.118 14 H 0.089 0.911 15 C -0.204 4.204 16 C 0.045 3.955 17 H 0.083 0.917 18 C 0.036 3.964 19 N -0.336 5.336 20 C -0.332 4.332 21 H 0.081 0.919 22 C -0.218 4.218 23 N -0.589 5.589 24 Si 0.730 3.270 25 H -0.210 1.210 26 H -0.225 1.225 27 H -0.225 1.225 28 C -0.025 4.025 29 C -0.140 4.140 30 H 0.082 0.918 31 H 0.090 0.910 32 H 0.086 0.914 33 H 0.106 0.894 34 H 0.105 0.895 35 H 0.177 0.823 36 H 0.168 0.832 37 H 0.073 0.927 38 H 0.129 0.871 39 H 0.081 0.919 40 H 0.084 0.916 41 H 0.076 0.924 42 H 0.080 0.920 43 H 0.073 0.927 44 H 0.084 0.916 45 H 0.069 0.931 46 H 0.050 0.950 47 H 0.035 0.965 48 H 0.214 0.786 49 H 0.057 0.943 50 H 0.098 0.902 51 H 0.073 0.927 52 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 12.436 -13.508 -10.490 21.146 hybrid contribution -0.855 0.082 0.110 0.866 sum 11.580 -13.426 -10.380 20.546 Atomic orbital electron populations 1.22177 0.94363 1.02704 1.03700 1.21794 0.95628 0.80912 1.03913 1.43612 1.51082 1.11701 1.05886 1.21585 1.08789 0.93619 0.90949 1.22163 1.07609 0.96827 0.93964 1.20418 1.12984 0.95003 0.93304 1.17492 0.80074 0.82019 0.87057 1.91280 1.47777 1.70501 1.22310 1.47712 1.39368 1.29615 1.17905 1.22322 0.91624 1.03629 0.86268 1.21907 0.96584 0.98641 0.99946 1.21574 0.99393 0.98138 0.95911 1.21453 0.95261 0.99199 0.95861 0.91133 1.21848 1.00322 0.97482 1.00705 1.21484 0.92484 0.89219 0.92266 0.91703 1.20865 0.86273 0.97885 0.91413 1.42210 1.02424 1.81855 1.07072 1.19185 0.90090 1.36302 0.87593 0.91916 1.24568 0.96743 1.04620 0.95912 1.69681 1.12359 1.56635 1.20225 0.86221 0.81249 0.76812 0.82721 1.20953 1.22504 1.22511 1.20160 1.02041 0.91153 0.89148 1.20377 1.04068 0.99739 0.89811 0.91816 0.90975 0.91447 0.89395 0.89523 0.82279 0.83235 0.92691 0.87102 0.91915 0.91624 0.92359 0.92036 0.92661 0.91626 0.93093 0.95029 0.96520 0.78595 0.94346 0.90203 0.92745 0.89338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.49 10.24 37.16 0.38 -1.11 16 2 C 0.10 0.86 6.45 -4.04 -0.03 0.83 16 3 N -0.44 -5.61 2.69 -112.52 -0.30 -5.91 16 4 C -0.02 -0.28 11.33 -16.83 -0.19 -0.47 16 5 C -0.18 -2.59 8.73 -37.50 -0.33 -2.92 16 6 C -0.21 -3.69 5.82 -103.35 -0.60 -4.29 16 7 C 0.55 11.33 7.07 -12.59 -0.09 11.24 16 8 O -0.45 -11.28 9.49 5.25 0.05 -11.23 16 9 N -0.61 -10.84 2.98 -166.33 -0.50 -11.34 16 10 C 0.08 1.15 5.64 -3.71 -0.02 1.13 16 11 C -0.13 -1.51 6.08 -26.61 -0.16 -1.67 16 12 C -0.11 -1.33 5.17 -26.69 -0.14 -1.46 16 13 C -0.10 -1.40 2.34 -90.49 -0.21 -1.61 16 14 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 15 C -0.15 -1.92 8.98 37.16 0.33 -1.59 16 16 C 0.15 2.72 2.38 -67.45 -0.16 2.56 16 17 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 18 C 0.16 3.69 4.84 -4.04 -0.02 3.67 16 19 N -0.69 -19.29 3.19 -59.91 -0.19 -19.48 16 20 C -0.20 -6.08 9.75 -15.06 -0.15 -6.22 16 21 H 0.06 1.88 7.83 -52.49 -0.41 1.47 16 22 C -0.02 -0.76 5.50 -17.43 -0.10 -0.86 16 23 N -0.94 -30.82 13.06 55.49 0.72 -30.09 16 24 Si 0.90 24.31 29.55 -169.99 -5.02 19.29 16 25 H -0.28 -7.45 7.11 56.52 0.40 -7.05 16 26 H -0.30 -8.04 7.11 56.52 0.40 -7.63 16 27 H -0.30 -8.13 7.11 56.52 0.40 -7.73 16 28 C 0.09 1.43 6.88 -81.88 -0.56 0.87 16 29 C -0.08 -1.26 9.41 36.00 0.34 -0.92 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.09 0.55 8.11 -51.93 -0.42 0.13 16 34 H 0.09 0.67 7.05 -51.93 -0.37 0.30 16 35 H 0.16 1.36 8.06 -52.48 -0.42 0.94 16 36 H 0.15 1.86 6.18 -52.48 -0.32 1.54 16 37 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.11 1.42 3.19 -51.93 -0.17 1.26 16 39 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 40 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 44 H 0.06 0.95 6.39 -51.93 -0.33 0.61 16 45 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.03 0.78 6.40 -51.93 -0.33 0.45 16 47 H 0.02 0.38 6.17 -51.93 -0.32 0.06 16 48 H 0.38 11.44 7.14 -40.82 -0.29 11.15 16 49 H 0.25 7.86 8.31 -40.82 -0.34 7.52 16 50 H 0.08 1.33 8.14 -51.93 -0.42 0.90 16 51 H 0.05 0.63 7.02 -51.93 -0.36 0.27 16 52 H 0.09 1.52 7.33 -51.93 -0.38 1.14 16 LS Contribution 393.91 15.07 5.94 5.94 Total: -1.00 -36.85 393.91 -9.77 -46.61 By element: Atomic # 1 Polarization: 17.79 SS G_CDS: -8.76 Total: 9.03 kcal Atomic # 6 Polarization: -1.12 SS G_CDS: -1.70 Total: -2.82 kcal Atomic # 7 Polarization: -66.55 SS G_CDS: -0.26 Total: -66.82 kcal Atomic # 8 Polarization: -11.28 SS G_CDS: 0.05 Total: -11.23 kcal Atomic # 14 Polarization: 24.31 SS G_CDS: -5.02 Total: 19.29 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -36.85 -9.77 -46.61 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715472222.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.570 kcal (2) G-P(sol) polarization free energy of solvation -36.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.613 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds