Wall clock time and date at job start Tue Mar 31 2020 17:59:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46500 * 109.47198 * 2 1 4 4 C 1.36443 * 124.85404 * 265.02809 * 3 2 1 5 5 C 1.34486 * 108.85776 * 179.68580 * 4 3 2 6 6 C 1.46684 * 106.33468 * 0.43425 * 5 4 3 7 7 C 1.47261 * 126.94856 * 179.82738 * 6 5 4 8 8 O 1.21629 * 120.00078 * 150.23108 * 7 6 5 9 9 N 1.34775 * 119.99815 * 330.24190 * 7 6 5 10 10 C 1.46924 * 120.63108 * 3.36149 * 9 7 6 11 11 C 1.53189 * 108.89758 * 233.67948 * 10 9 7 12 12 C 1.53045 * 109.30766 * 305.29259 * 11 10 9 13 13 C 1.53041 * 109.53688 * 61.36747 * 12 11 10 14 14 H 1.08996 * 109.49902 * 58.58408 * 13 12 11 15 15 C 1.53005 * 109.49465 * 178.65142 * 13 12 11 16 16 C 1.47199 * 120.81525 * 183.50229 * 9 7 6 17 17 H 1.08999 * 109.68231 * 246.22907 * 16 9 7 18 18 C 1.53002 * 109.53431 * 6.53900 * 16 9 7 19 19 N 1.46501 * 109.46892 * 287.88961 * 18 16 9 20 20 C 1.36936 * 120.00128 * 185.95053 * 19 18 16 21 21 H 1.08002 * 120.00084 * 0.02562 * 20 19 18 22 22 C 1.38809 * 120.00230 * 180.02562 * 20 19 18 23 23 N 1.31622 * 119.99919 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 119.99975 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47337 * 359.97438 * 24 22 20 26 26 H 1.48503 * 109.47359 * 120.00028 * 24 22 20 27 27 H 1.48509 * 109.46826 * 239.99820 * 24 22 20 28 28 C 1.34660 * 124.84958 * 84.99454 * 3 2 1 29 29 C 1.50698 * 125.80159 * 0.05152 * 28 3 2 30 30 H 1.09004 * 109.47054 * 60.00293 * 1 2 3 31 31 H 1.09004 * 109.46873 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47694 * 299.99594 * 1 2 3 33 33 H 1.09004 * 109.47262 * 240.00337 * 2 1 3 34 34 H 1.09000 * 109.47509 * 119.99848 * 2 1 3 35 35 H 1.08008 * 125.57045 * 359.97019 * 4 3 2 36 36 H 1.08006 * 126.83238 * 180.26183 * 5 4 3 37 37 H 1.09005 * 109.58886 * 113.81718 * 10 9 7 38 38 H 1.09005 * 109.58654 * 353.54059 * 10 9 7 39 39 H 1.08993 * 109.49884 * 65.23994 * 11 10 9 40 40 H 1.08994 * 109.50281 * 185.34261 * 11 10 9 41 41 H 1.09002 * 109.45707 * 181.38055 * 12 11 10 42 42 H 1.08995 * 109.46153 * 301.34384 * 12 11 10 43 43 H 1.08998 * 109.47199 * 60.00038 * 15 13 12 44 44 H 1.09003 * 109.46734 * 179.97438 * 15 13 12 45 45 H 1.08997 * 109.46970 * 299.99166 * 15 13 12 46 46 H 1.08994 * 109.47040 * 47.88786 * 18 16 9 47 47 H 1.08995 * 109.47388 * 167.89217 * 18 16 9 48 48 H 0.97001 * 120.00060 * 5.96424 * 19 18 16 49 49 H 0.97000 * 119.99958 * 179.97438 * 23 22 20 50 50 H 1.09005 * 109.47025 * 269.99746 * 29 28 3 51 51 H 1.09001 * 109.47501 * 29.99417 * 29 28 3 52 52 H 1.08996 * 109.47296 * 149.99863 * 29 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3697 2.0840 -1.1154 5 6 2.7638 3.3159 -0.7469 6 6 2.6525 3.3645 0.7150 7 6 2.9743 4.5045 1.5898 8 8 2.3781 4.6528 2.6395 9 7 3.9292 5.3837 1.2271 10 6 4.6065 5.2602 -0.0709 11 6 6.1205 5.2309 0.1603 12 6 6.5333 6.4646 0.9665 13 6 5.8361 6.4426 2.3287 14 1 6.1052 5.5300 2.8604 15 6 6.2754 7.6587 3.1468 16 6 4.3188 6.4856 2.1220 17 1 4.0379 7.4389 1.6743 18 6 3.6128 6.3241 3.4697 19 7 2.1897 6.6361 3.3160 20 6 1.3754 6.6789 4.4161 21 1 1.7823 6.4832 5.3971 22 6 0.0269 6.9740 4.2703 23 7 -0.4692 7.2121 3.0747 24 14 -1.0838 7.0331 5.7711 25 1 -0.2883 6.7302 6.9879 26 1 -1.6794 8.3880 5.8932 27 1 -2.1669 6.0276 5.6253 28 6 2.1839 2.1388 1.1009 29 6 1.9015 1.7091 2.5174 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5137 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 2.3327 1.7133 -2.1292 36 1 3.0986 4.1103 -1.3975 37 1 4.3493 6.1126 -0.6998 38 1 4.2936 4.3377 -0.5600 39 1 6.3869 4.3297 0.7125 40 1 6.6355 5.2351 -0.8003 41 1 7.6136 6.4589 1.1114 42 1 6.2444 7.3655 0.4252 43 1 6.0051 8.5711 2.6153 44 1 5.7782 7.6428 4.1168 45 1 7.3553 7.6286 3.2912 46 1 3.7241 5.2971 3.8174 47 1 4.0573 7.0040 4.1965 48 1 1.8242 6.8121 2.4349 49 1 -1.4117 7.4179 2.9728 50 1 0.8679 1.9461 2.7698 51 1 2.0609 0.6347 2.6099 52 1 2.5714 2.2356 3.1972 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715472222.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:59:28 Heat of formation + Delta-G solvation = 47.179683 kcal Electronic energy + Delta-G solvation = -31081.037771 eV Core-core repulsion = 27275.607570 eV Total energy + Delta-G solvation = -3805.430202 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.36823 -41.01601 -38.23918 -36.43246 -35.14248 -34.35718 -33.58153 -32.49112 -31.88767 -30.36425 -28.49823 -27.33873 -26.90599 -25.67356 -24.61021 -23.95851 -22.46720 -22.28187 -21.11844 -20.55081 -19.17784 -18.92251 -17.79065 -17.04649 -16.72461 -16.54651 -16.23707 -15.89371 -15.58099 -15.45042 -15.23458 -14.96332 -14.72076 -14.43710 -14.26901 -14.06789 -13.94194 -13.80822 -13.67674 -13.58698 -13.27934 -13.23081 -12.99644 -12.93214 -12.81968 -12.75955 -12.69556 -12.39778 -12.33741 -12.10749 -12.03785 -11.88667 -11.77673 -11.57957 -11.29014 -11.03584 -10.82618 -9.85865 -9.34473 -9.25726 -8.94328 -8.55773 -7.79899 -4.97644 1.03034 1.41453 1.44695 1.54018 1.61972 1.96848 2.42714 2.62629 2.75093 3.52411 3.76476 3.82174 3.85741 3.87454 3.99854 4.07298 4.13856 4.18671 4.27320 4.35485 4.38975 4.43084 4.46851 4.47705 4.60335 4.61107 4.64355 4.73717 4.82233 4.83866 4.84084 4.91257 4.93235 4.97928 5.01368 5.09117 5.13087 5.18983 5.22749 5.26960 5.29967 5.32828 5.35540 5.44221 5.52890 5.59315 5.89620 6.01134 6.23026 6.40428 6.50636 6.89192 7.46135 7.81536 8.29022 8.52235 9.45627 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.007731 B = 0.005735 C = 0.003588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3620.834085 B = 4881.353747 C = 7802.321408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.092 3.908 3 N -0.438 5.438 4 C 0.000 4.000 5 C -0.199 4.199 6 C -0.249 4.249 7 C 0.539 3.461 8 O -0.514 6.514 9 N -0.609 5.609 10 C 0.077 3.923 11 C -0.124 4.124 12 C -0.108 4.108 13 C -0.090 4.090 14 H 0.062 0.938 15 C -0.143 4.143 16 C 0.154 3.846 17 H 0.050 0.950 18 C 0.169 3.831 19 N -0.699 5.699 20 C -0.203 4.203 21 H 0.061 0.939 22 C -0.089 4.089 23 N -0.976 5.976 24 Si 0.966 3.034 25 H -0.270 1.270 26 H -0.292 1.292 27 H -0.300 1.300 28 C 0.074 3.926 29 C -0.073 4.073 30 H 0.057 0.943 31 H 0.100 0.900 32 H 0.037 0.963 33 H 0.126 0.874 34 H 0.097 0.903 35 H 0.206 0.794 36 H 0.165 0.835 37 H 0.061 0.939 38 H 0.122 0.878 39 H 0.056 0.944 40 H 0.100 0.900 41 H 0.085 0.915 42 H 0.065 0.935 43 H 0.056 0.944 44 H 0.044 0.956 45 H 0.080 0.920 46 H 0.011 0.989 47 H 0.019 0.981 48 H 0.365 0.635 49 H 0.242 0.758 50 H 0.055 0.945 51 H 0.092 0.908 52 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.978 -15.096 -13.568 25.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.028 4.028 3 N -0.114 5.114 4 C -0.127 4.127 5 C -0.222 4.222 6 C -0.259 4.259 7 C 0.328 3.672 8 O -0.389 6.389 9 N -0.344 5.344 10 C -0.044 4.044 11 C -0.162 4.162 12 C -0.145 4.145 13 C -0.109 4.109 14 H 0.081 0.919 15 C -0.200 4.200 16 C 0.050 3.950 17 H 0.068 0.932 18 C 0.043 3.957 19 N -0.339 5.339 20 C -0.336 4.336 21 H 0.079 0.921 22 C -0.280 4.280 23 N -0.630 5.630 24 Si 0.797 3.203 25 H -0.195 1.195 26 H -0.219 1.219 27 H -0.228 1.228 28 C -0.042 4.042 29 C -0.131 4.131 30 H 0.076 0.924 31 H 0.119 0.881 32 H 0.056 0.944 33 H 0.144 0.856 34 H 0.116 0.884 35 H 0.223 0.777 36 H 0.182 0.818 37 H 0.079 0.921 38 H 0.140 0.860 39 H 0.075 0.925 40 H 0.119 0.881 41 H 0.104 0.896 42 H 0.084 0.916 43 H 0.075 0.925 44 H 0.063 0.937 45 H 0.099 0.901 46 H 0.029 0.971 47 H 0.037 0.963 48 H 0.196 0.804 49 H 0.051 0.949 50 H 0.074 0.926 51 H 0.110 0.890 52 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 14.521 -15.395 -12.807 24.736 hybrid contribution -1.430 0.547 0.754 1.707 sum 13.090 -14.849 -12.052 23.175 Atomic orbital electron populations 1.22163 0.94558 1.04014 1.01927 1.22181 0.95383 0.78830 1.06358 1.43905 1.49725 1.12918 1.04894 1.22269 1.05590 0.92511 0.92366 1.22327 1.09144 0.98613 0.92117 1.20460 1.15545 0.94794 0.95107 1.18132 0.79653 0.82747 0.86632 1.91225 1.50045 1.72570 1.25031 1.47867 1.38805 1.28502 1.19259 1.22633 0.93141 1.04467 0.84173 1.21874 0.94641 0.98146 1.01584 1.21570 1.00569 0.98535 0.93830 1.21398 0.92049 0.99396 0.98101 0.91912 1.21826 1.01948 0.96934 0.99328 1.21364 0.94953 0.88844 0.89857 0.93175 1.20864 0.84221 0.96256 0.94408 1.42291 1.04180 1.81843 1.05549 1.19524 0.90901 1.34862 0.88270 0.92121 1.25367 0.98178 1.05481 0.98942 1.69866 1.12212 1.58457 1.22440 0.85131 0.78935 0.76572 0.79661 1.19456 1.21950 1.22815 1.20168 1.02331 0.91574 0.90156 1.20211 1.01653 1.01675 0.89555 0.92363 0.88142 0.94417 0.85636 0.88442 0.77691 0.81788 0.92067 0.86024 0.92483 0.88141 0.89630 0.91596 0.92473 0.93715 0.90148 0.97146 0.96342 0.80384 0.94926 0.92633 0.88973 0.92346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.57 10.24 71.98 0.74 -1.84 16 2 C 0.09 1.28 6.45 86.38 0.56 1.84 16 3 N -0.44 -10.12 2.69 -509.91 -1.37 -11.49 16 4 C 0.00 -0.01 11.33 83.12 0.94 0.93 16 5 C -0.20 -5.41 8.73 23.62 0.21 -5.20 16 6 C -0.25 -9.13 5.82 -19.04 -0.11 -9.24 16 7 C 0.54 23.80 7.07 86.62 0.61 24.41 16 8 O -0.51 -28.07 9.49 -4.12 -0.04 -28.11 16 9 N -0.61 -22.48 2.98 -798.39 -2.38 -24.86 16 10 C 0.08 2.02 5.64 86.36 0.49 2.50 16 11 C -0.12 -2.49 6.08 30.67 0.19 -2.30 16 12 C -0.11 -2.24 5.17 30.62 0.16 -2.08 16 13 C -0.09 -2.52 2.34 -10.71 -0.03 -2.54 16 14 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 15 C -0.14 -3.65 8.98 71.98 0.65 -3.00 16 16 C 0.15 5.86 2.38 44.92 0.11 5.96 16 17 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 18 C 0.17 8.18 4.84 86.38 0.42 8.60 16 19 N -0.70 -41.50 3.19 -343.46 -1.09 -42.59 16 20 C -0.20 -12.99 9.75 84.03 0.82 -12.17 16 21 H 0.06 3.82 7.83 -2.91 -0.02 3.79 16 22 C -0.09 -5.80 5.50 84.86 0.47 -5.34 16 23 N -0.98 -67.13 13.06 21.65 0.28 -66.85 16 24 Si 0.97 52.02 29.55 68.60 2.03 54.05 16 25 H -0.27 -13.72 7.11 99.48 0.71 -13.01 16 26 H -0.29 -15.37 7.11 99.48 0.71 -14.66 16 27 H -0.30 -16.19 7.11 99.48 0.71 -15.48 16 28 C 0.07 2.41 6.88 41.78 0.29 2.70 16 29 C -0.07 -2.38 9.41 71.24 0.67 -1.71 16 30 H 0.06 0.95 8.14 -2.38 -0.02 0.93 16 31 H 0.10 0.96 8.14 -2.38 -0.02 0.94 16 32 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.13 0.89 8.11 -2.39 -0.02 0.87 16 34 H 0.10 1.18 7.05 -2.39 -0.02 1.16 16 35 H 0.21 2.36 8.06 -2.91 -0.02 2.34 16 36 H 0.17 3.80 6.18 -2.91 -0.02 3.78 16 37 H 0.06 1.53 8.14 -2.38 -0.02 1.51 16 38 H 0.12 2.95 3.19 -2.38 -0.01 2.94 16 39 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 41 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 42 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 43 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 44 H 0.04 1.31 6.39 -2.39 -0.02 1.30 16 45 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 46 H 0.01 0.57 6.40 -2.39 -0.02 0.56 16 47 H 0.02 0.89 6.17 -2.39 -0.01 0.88 16 48 H 0.36 23.50 7.14 -92.71 -0.66 22.84 16 49 H 0.24 16.09 8.31 -92.71 -0.77 15.31 16 50 H 0.05 2.03 8.14 -2.38 -0.02 2.01 16 51 H 0.09 2.14 7.02 -2.39 -0.02 2.12 16 52 H 0.06 2.22 7.33 -2.39 -0.02 2.20 16 Total: -1.00 -87.88 393.91 4.84 -83.05 By element: Atomic # 1 Polarization: 35.03 SS G_CDS: 0.25 Total: 35.27 kcal Atomic # 6 Polarization: -5.64 SS G_CDS: 7.16 Total: 1.52 kcal Atomic # 7 Polarization: -141.22 SS G_CDS: -4.56 Total: -145.79 kcal Atomic # 8 Polarization: -28.07 SS G_CDS: -0.04 Total: -28.11 kcal Atomic # 14 Polarization: 52.02 SS G_CDS: 2.03 Total: 54.05 kcal Total: -87.88 4.84 -83.05 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715472222.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.226 kcal (2) G-P(sol) polarization free energy of solvation -87.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.046 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds