Wall clock time and date at job start Tue Mar 31 2020 17:59:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46498 * 109.47330 * 2 1 4 4 C 1.36446 * 124.85045 * 265.20248 * 3 2 1 5 5 C 1.34485 * 108.85296 * 180.26330 * 4 3 2 6 6 C 1.46687 * 106.33516 * 359.73831 * 5 4 3 7 7 C 1.47265 * 126.94200 * 179.97438 * 6 5 4 8 8 O 1.21626 * 119.99635 * 217.29140 * 7 6 5 9 9 N 1.34772 * 119.99864 * 37.29167 * 7 6 5 10 10 C 1.46917 * 120.63533 * 4.72019 * 9 7 6 11 11 C 1.53621 * 108.54556 * 126.36988 * 10 9 7 12 12 C 1.53035 * 109.24158 * 54.85672 * 11 10 9 13 13 C 1.53037 * 109.53858 * 298.51151 * 12 11 10 14 14 H 1.08993 * 109.50165 * 301.41184 * 13 12 11 15 15 C 1.52998 * 109.49622 * 181.31507 * 13 12 11 16 16 C 1.46932 * 120.62518 * 185.00244 * 9 7 6 17 17 H 1.09006 * 109.58646 * 113.65816 * 16 9 7 18 18 C 1.52999 * 109.58918 * 353.36879 * 16 9 7 19 19 N 1.46502 * 109.46667 * 70.50770 * 18 16 9 20 20 C 1.36940 * 119.99485 * 173.81205 * 19 18 16 21 21 H 1.08000 * 120.00473 * 359.97438 * 20 19 18 22 22 C 1.38818 * 119.99760 * 179.97438 * 20 19 18 23 23 N 1.31622 * 119.99861 * 359.97438 * 22 20 19 24 24 Si 1.86793 * 119.99878 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47286 * 359.97438 * 24 22 20 26 26 H 1.48496 * 109.47300 * 119.99940 * 24 22 20 27 27 H 1.48505 * 109.46918 * 239.99767 * 24 22 20 28 28 C 1.34657 * 124.84968 * 85.00049 * 3 2 1 29 29 C 1.50701 * 125.80115 * 359.97438 * 28 3 2 30 30 H 1.08996 * 109.47108 * 60.00021 * 1 2 3 31 31 H 1.09000 * 109.47249 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47422 * 299.99897 * 1 2 3 33 33 H 1.09004 * 109.47315 * 239.99785 * 2 1 3 34 34 H 1.09006 * 109.47198 * 119.99918 * 2 1 3 35 35 H 1.07995 * 125.57595 * 359.97438 * 4 3 2 36 36 H 1.08001 * 126.83408 * 179.71748 * 5 4 3 37 37 H 1.09002 * 109.58884 * 246.20353 * 10 9 7 38 38 H 1.09006 * 109.58781 * 6.62568 * 10 9 7 39 39 H 1.09004 * 109.63495 * 294.86528 * 11 10 9 40 40 H 1.09000 * 109.45941 * 174.74449 * 11 10 9 41 41 H 1.09006 * 109.46037 * 178.48818 * 12 11 10 42 42 H 1.08999 * 109.46103 * 58.53431 * 12 11 10 43 43 H 1.08999 * 109.47785 * 300.16461 * 15 13 12 44 44 H 1.09000 * 109.47196 * 60.16404 * 15 13 12 45 45 H 1.09003 * 109.47199 * 180.16169 * 15 13 12 46 46 H 1.09002 * 109.46731 * 190.50448 * 18 16 9 47 47 H 1.09002 * 109.47042 * 310.50904 * 18 16 9 48 48 H 0.97000 * 120.00583 * 353.80789 * 19 18 16 49 49 H 0.97002 * 119.99972 * 180.02562 * 23 22 20 50 50 H 1.08995 * 109.47759 * 269.71948 * 29 28 3 51 51 H 1.08998 * 109.47118 * 29.73034 * 29 28 3 52 52 H 1.09004 * 109.46795 * 149.72307 * 29 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3666 2.0851 -1.1158 5 6 2.7738 3.3123 -0.7460 6 6 2.6586 3.3622 0.7155 7 6 2.9881 4.4996 1.5909 8 8 3.4992 4.3029 2.6770 9 7 2.7234 5.7583 1.1887 10 6 2.0135 6.0073 -0.0733 11 6 0.8029 6.9074 0.2164 12 6 1.2764 8.1750 0.9313 13 6 1.9261 7.7981 2.2647 14 1 1.2069 7.2575 2.8799 15 6 2.3697 9.0681 2.9936 16 6 3.1446 6.9079 2.0010 17 1 3.9051 7.4754 1.4645 18 6 3.7165 6.4140 3.3313 19 7 5.0070 5.7617 3.0959 20 6 5.7699 5.3507 4.1562 21 1 5.4205 5.5078 5.1660 22 6 6.9925 4.7322 3.9332 23 7 7.4181 4.5403 2.7025 24 14 8.0335 4.1722 5.3795 25 1 7.3363 4.5024 6.6485 26 1 8.2455 2.7047 5.2980 27 1 9.3465 4.8649 5.3419 28 6 2.1841 2.1387 1.1009 29 6 1.9003 1.7095 2.5173 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 2.3266 1.7155 -2.1298 36 1 3.1176 4.1035 -1.3957 37 1 2.6818 6.5042 -0.7766 38 1 1.6745 5.0609 -0.4947 39 1 0.0941 6.3751 0.8509 40 1 0.3189 7.1782 -0.7220 41 1 0.4236 8.8286 1.1147 42 1 2.0037 8.6939 0.3069 43 1 3.0877 9.6089 2.3771 44 1 1.5024 9.7012 3.1810 45 1 2.8349 8.7991 3.9419 46 1 3.8546 7.2605 4.0041 47 1 3.0257 5.7010 3.7814 48 1 5.3210 5.6209 2.1890 49 1 8.2722 4.1078 2.5466 50 1 0.8683 1.9521 2.7707 51 1 2.0538 0.6342 2.6088 52 1 2.5737 2.2317 3.1970 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715472226.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:59:37 Heat of formation + Delta-G solvation = 59.856238 kcal Electronic energy + Delta-G solvation = -31081.610005 eV Core-core repulsion = 27276.729499 eV Total energy + Delta-G solvation = -3804.880505 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.19771 -39.67562 -36.85482 -34.67410 -33.80530 -33.16256 -31.91709 -31.29099 -30.09208 -29.27444 -27.00740 -26.10012 -25.54397 -24.07718 -23.42711 -22.31151 -21.33969 -20.87253 -19.94388 -19.28284 -17.86176 -17.00623 -16.52917 -15.79970 -15.32602 -14.93116 -14.66265 -14.61090 -14.50797 -14.17430 -13.73384 -13.56169 -13.33959 -13.17993 -12.88277 -12.84733 -12.63295 -12.50189 -12.45098 -12.28923 -12.18710 -12.02824 -11.85430 -11.69457 -11.47763 -11.43188 -11.24820 -11.17971 -10.78774 -10.72579 -10.62356 -10.44339 -10.36295 -10.00922 -9.63191 -9.36747 -8.59109 -8.31096 -8.02392 -7.79640 -7.73376 -6.34736 -5.41383 -2.60478 2.31130 2.78105 2.96098 3.61600 3.66395 3.69014 3.75423 4.12473 4.51039 4.77666 4.85911 4.87018 4.91949 5.03492 5.04615 5.06974 5.18363 5.25806 5.34916 5.36780 5.50869 5.52134 5.60957 5.71141 5.76455 5.77167 5.79114 5.85988 5.89574 5.91727 5.96226 6.01263 6.04721 6.09175 6.19118 6.25035 6.27932 6.29686 6.34149 6.45048 6.52559 6.60897 6.77521 6.90464 7.12071 7.16395 7.37384 7.51289 7.54994 7.99525 8.30003 8.76837 9.30873 9.87863 10.51337 10.85423 11.82889 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.008194 B = 0.005412 C = 0.003621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3416.310597 B = 5172.717874 C = 7730.966990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.098 3.902 3 N -0.445 5.445 4 C -0.025 4.025 5 C -0.170 4.170 6 C -0.205 4.205 7 C 0.554 3.446 8 O -0.454 6.454 9 N -0.611 5.611 10 C 0.105 3.895 11 C -0.133 4.133 12 C -0.112 4.112 13 C -0.098 4.098 14 H 0.071 0.929 15 C -0.146 4.146 16 C 0.149 3.851 17 H 0.065 0.935 18 C 0.160 3.840 19 N -0.698 5.698 20 C -0.201 4.201 21 H 0.064 0.936 22 C -0.024 4.024 23 N -0.938 5.938 24 Si 0.898 3.102 25 H -0.284 1.284 26 H -0.297 1.297 27 H -0.297 1.297 28 C 0.085 3.915 29 C -0.093 4.093 30 H 0.062 0.938 31 H 0.071 0.929 32 H 0.063 0.937 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.160 0.840 36 H 0.142 0.858 37 H 0.056 0.944 38 H 0.095 0.905 39 H 0.062 0.938 40 H 0.065 0.935 41 H 0.058 0.942 42 H 0.061 0.939 43 H 0.054 0.946 44 H 0.050 0.950 45 H 0.065 0.935 46 H 0.015 0.985 47 H 0.041 0.959 48 H 0.379 0.621 49 H 0.247 0.753 50 H 0.066 0.934 51 H 0.059 0.941 52 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.295 -2.425 -10.247 21.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.024 4.024 3 N -0.123 5.123 4 C -0.151 4.151 5 C -0.194 4.194 6 C -0.215 4.215 7 C 0.341 3.659 8 O -0.324 6.324 9 N -0.347 5.347 10 C -0.018 4.018 11 C -0.171 4.171 12 C -0.150 4.150 13 C -0.118 4.118 14 H 0.089 0.911 15 C -0.204 4.204 16 C 0.045 3.955 17 H 0.082 0.918 18 C 0.033 3.967 19 N -0.340 5.340 20 C -0.333 4.333 21 H 0.082 0.918 22 C -0.218 4.218 23 N -0.589 5.589 24 Si 0.731 3.269 25 H -0.209 1.209 26 H -0.225 1.225 27 H -0.225 1.225 28 C -0.030 4.030 29 C -0.151 4.151 30 H 0.081 0.919 31 H 0.090 0.910 32 H 0.082 0.918 33 H 0.107 0.893 34 H 0.106 0.894 35 H 0.177 0.823 36 H 0.159 0.841 37 H 0.074 0.926 38 H 0.113 0.887 39 H 0.081 0.919 40 H 0.084 0.916 41 H 0.077 0.923 42 H 0.080 0.920 43 H 0.073 0.927 44 H 0.069 0.931 45 H 0.084 0.916 46 H 0.032 0.968 47 H 0.058 0.942 48 H 0.213 0.787 49 H 0.057 0.943 50 H 0.085 0.915 51 H 0.078 0.922 52 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -19.058 -2.933 -9.447 21.472 hybrid contribution 0.807 -0.498 0.041 0.949 sum -18.250 -3.431 -9.406 20.816 Atomic orbital electron populations 1.22157 0.94581 1.02684 1.03186 1.21794 0.95301 0.81114 1.04220 1.43576 1.51336 1.11476 1.05868 1.21539 1.09222 0.93378 0.90952 1.22006 1.06707 0.97163 0.93569 1.20350 1.12675 0.95121 0.93339 1.17425 0.79934 0.81609 0.86942 1.91142 1.37424 1.83647 1.20231 1.47668 1.59334 1.05309 1.22425 1.21923 0.92842 1.00534 0.86519 1.21990 0.98072 0.96748 1.00314 1.21570 0.99966 0.97012 0.96442 1.21454 0.97627 0.96403 0.96297 0.91068 1.21843 1.00806 0.96608 1.01097 1.21471 0.94230 0.86109 0.93646 0.91753 1.20965 0.89808 0.94138 0.91788 1.42229 1.16409 1.69198 1.06169 1.19192 0.97533 1.28959 0.87625 0.91826 1.24580 0.98469 1.02960 0.95781 1.69680 1.21261 1.50193 1.17789 0.86208 0.80474 0.78032 0.82207 1.20913 1.22470 1.22482 1.20107 1.03254 0.90634 0.88979 1.20504 1.02723 1.01220 0.90631 0.91931 0.90999 0.91800 0.89324 0.89428 0.82311 0.84056 0.92591 0.88652 0.91897 0.91599 0.92316 0.92009 0.92682 0.93101 0.91620 0.96770 0.94170 0.78723 0.94298 0.91532 0.92211 0.87846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.21 10.24 37.16 0.38 -0.83 16 2 C 0.10 0.86 6.45 -4.04 -0.03 0.84 16 3 N -0.44 -5.74 2.69 -112.53 -0.30 -6.04 16 4 C -0.02 -0.31 11.33 -16.83 -0.19 -0.51 16 5 C -0.17 -2.56 8.64 -37.50 -0.32 -2.88 16 6 C -0.21 -3.71 5.42 -103.35 -0.56 -4.27 16 7 C 0.55 11.49 6.91 -12.59 -0.09 11.40 16 8 O -0.45 -11.38 9.37 5.25 0.05 -11.33 16 9 N -0.61 -10.81 2.97 -166.27 -0.49 -11.30 16 10 C 0.11 1.43 5.52 -3.49 -0.02 1.41 16 11 C -0.13 -1.51 6.10 -26.39 -0.16 -1.67 16 12 C -0.11 -1.31 5.16 -26.69 -0.14 -1.45 16 13 C -0.10 -1.39 2.34 -90.50 -0.21 -1.60 16 14 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 15 C -0.15 -1.91 8.98 37.16 0.33 -1.57 16 16 C 0.15 2.71 2.38 -67.60 -0.16 2.55 16 17 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 18 C 0.16 3.63 4.81 -4.04 -0.02 3.61 16 19 N -0.70 -19.42 3.26 -59.90 -0.20 -19.62 16 20 C -0.20 -6.13 9.78 -15.06 -0.15 -6.28 16 21 H 0.06 1.91 7.83 -52.49 -0.41 1.50 16 22 C -0.02 -0.74 5.50 -17.43 -0.10 -0.84 16 23 N -0.94 -30.83 13.06 55.49 0.72 -30.10 16 24 Si 0.90 24.36 29.55 -169.99 -5.02 19.33 16 25 H -0.28 -7.44 7.11 56.52 0.40 -7.04 16 26 H -0.30 -8.13 7.11 56.52 0.40 -7.73 16 27 H -0.30 -8.03 7.11 56.52 0.40 -7.62 16 28 C 0.08 1.36 6.88 -81.88 -0.56 0.80 16 29 C -0.09 -1.39 9.86 36.01 0.36 -1.03 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.09 0.62 8.11 -51.93 -0.42 0.20 16 34 H 0.09 0.75 7.05 -51.93 -0.37 0.38 16 35 H 0.16 1.47 8.06 -52.49 -0.42 1.05 16 36 H 0.14 1.94 7.25 -52.49 -0.38 1.56 16 37 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.10 1.25 4.53 -51.93 -0.24 1.02 16 39 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 41 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 44 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.06 0.94 6.41 -51.93 -0.33 0.61 16 46 H 0.01 0.33 6.22 -51.93 -0.32 0.01 16 47 H 0.04 0.99 6.24 -51.93 -0.32 0.66 16 48 H 0.38 11.37 7.10 -40.82 -0.29 11.08 16 49 H 0.25 7.87 8.31 -40.82 -0.34 7.53 16 50 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 51 H 0.06 0.74 7.01 -51.93 -0.36 0.38 16 52 H 0.10 1.92 6.60 -51.93 -0.34 1.58 16 LS Contribution 395.07 15.07 5.95 5.95 Total: -1.00 -36.81 395.07 -9.77 -46.57 By element: Atomic # 1 Polarization: 17.71 SS G_CDS: -8.84 Total: 8.86 kcal Atomic # 6 Polarization: -0.69 SS G_CDS: -1.64 Total: -2.33 kcal Atomic # 7 Polarization: -66.80 SS G_CDS: -0.27 Total: -67.07 kcal Atomic # 8 Polarization: -11.38 SS G_CDS: 0.05 Total: -11.33 kcal Atomic # 14 Polarization: 24.36 SS G_CDS: -5.02 Total: 19.33 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -36.81 -9.77 -46.57 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715472226.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.431 kcal (2) G-P(sol) polarization free energy of solvation -36.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.575 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds