Wall clock time and date at job start Tue Mar 31 2020 17:59:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46498 * 109.47330 * 2 1 4 4 C 1.36446 * 124.85045 * 265.20248 * 3 2 1 5 5 C 1.34485 * 108.85296 * 180.26330 * 4 3 2 6 6 C 1.46687 * 106.33516 * 359.73831 * 5 4 3 7 7 C 1.47265 * 126.94200 * 179.97438 * 6 5 4 8 8 O 1.21626 * 119.99635 * 217.29140 * 7 6 5 9 9 N 1.34772 * 119.99864 * 37.29167 * 7 6 5 10 10 C 1.46917 * 120.63533 * 4.72019 * 9 7 6 11 11 C 1.53621 * 108.54556 * 126.36988 * 10 9 7 12 12 C 1.53035 * 109.24158 * 54.85672 * 11 10 9 13 13 C 1.53037 * 109.53858 * 298.51151 * 12 11 10 14 14 H 1.08993 * 109.50165 * 301.41184 * 13 12 11 15 15 C 1.52998 * 109.49622 * 181.31507 * 13 12 11 16 16 C 1.46932 * 120.62518 * 185.00244 * 9 7 6 17 17 H 1.09006 * 109.58646 * 113.65816 * 16 9 7 18 18 C 1.52999 * 109.58918 * 353.36879 * 16 9 7 19 19 N 1.46502 * 109.46667 * 70.50770 * 18 16 9 20 20 C 1.36940 * 119.99485 * 173.81205 * 19 18 16 21 21 H 1.08000 * 120.00473 * 359.97438 * 20 19 18 22 22 C 1.38818 * 119.99760 * 179.97438 * 20 19 18 23 23 N 1.31622 * 119.99861 * 359.97438 * 22 20 19 24 24 Si 1.86793 * 119.99878 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47286 * 359.97438 * 24 22 20 26 26 H 1.48496 * 109.47300 * 119.99940 * 24 22 20 27 27 H 1.48505 * 109.46918 * 239.99767 * 24 22 20 28 28 C 1.34657 * 124.84968 * 85.00049 * 3 2 1 29 29 C 1.50701 * 125.80115 * 359.97438 * 28 3 2 30 30 H 1.08996 * 109.47108 * 60.00021 * 1 2 3 31 31 H 1.09000 * 109.47249 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47422 * 299.99897 * 1 2 3 33 33 H 1.09004 * 109.47315 * 239.99785 * 2 1 3 34 34 H 1.09006 * 109.47198 * 119.99918 * 2 1 3 35 35 H 1.07995 * 125.57595 * 359.97438 * 4 3 2 36 36 H 1.08001 * 126.83408 * 179.71748 * 5 4 3 37 37 H 1.09002 * 109.58884 * 246.20353 * 10 9 7 38 38 H 1.09006 * 109.58781 * 6.62568 * 10 9 7 39 39 H 1.09004 * 109.63495 * 294.86528 * 11 10 9 40 40 H 1.09000 * 109.45941 * 174.74449 * 11 10 9 41 41 H 1.09006 * 109.46037 * 178.48818 * 12 11 10 42 42 H 1.08999 * 109.46103 * 58.53431 * 12 11 10 43 43 H 1.08999 * 109.47785 * 300.16461 * 15 13 12 44 44 H 1.09000 * 109.47196 * 60.16404 * 15 13 12 45 45 H 1.09003 * 109.47199 * 180.16169 * 15 13 12 46 46 H 1.09002 * 109.46731 * 190.50448 * 18 16 9 47 47 H 1.09002 * 109.47042 * 310.50904 * 18 16 9 48 48 H 0.97000 * 120.00583 * 353.80789 * 19 18 16 49 49 H 0.97002 * 119.99972 * 180.02562 * 23 22 20 50 50 H 1.08995 * 109.47759 * 269.71948 * 29 28 3 51 51 H 1.08998 * 109.47118 * 29.73034 * 29 28 3 52 52 H 1.09004 * 109.46795 * 149.72307 * 29 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3666 2.0851 -1.1158 5 6 2.7738 3.3123 -0.7460 6 6 2.6586 3.3622 0.7155 7 6 2.9881 4.4996 1.5909 8 8 3.4992 4.3029 2.6770 9 7 2.7234 5.7583 1.1887 10 6 2.0135 6.0073 -0.0733 11 6 0.8029 6.9074 0.2164 12 6 1.2764 8.1750 0.9313 13 6 1.9261 7.7981 2.2647 14 1 1.2069 7.2575 2.8799 15 6 2.3697 9.0681 2.9936 16 6 3.1446 6.9079 2.0010 17 1 3.9051 7.4754 1.4645 18 6 3.7165 6.4140 3.3313 19 7 5.0070 5.7617 3.0959 20 6 5.7699 5.3507 4.1562 21 1 5.4205 5.5078 5.1660 22 6 6.9925 4.7322 3.9332 23 7 7.4181 4.5403 2.7025 24 14 8.0335 4.1722 5.3795 25 1 7.3363 4.5024 6.6485 26 1 8.2455 2.7047 5.2980 27 1 9.3465 4.8649 5.3419 28 6 2.1841 2.1387 1.1009 29 6 1.9003 1.7095 2.5173 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 2.3266 1.7155 -2.1298 36 1 3.1176 4.1035 -1.3957 37 1 2.6818 6.5042 -0.7766 38 1 1.6745 5.0609 -0.4947 39 1 0.0941 6.3751 0.8509 40 1 0.3189 7.1782 -0.7220 41 1 0.4236 8.8286 1.1147 42 1 2.0037 8.6939 0.3069 43 1 3.0877 9.6089 2.3771 44 1 1.5024 9.7012 3.1810 45 1 2.8349 8.7991 3.9419 46 1 3.8546 7.2605 4.0041 47 1 3.0257 5.7010 3.7814 48 1 5.3210 5.6209 2.1890 49 1 8.2722 4.1078 2.5466 50 1 0.8683 1.9521 2.7707 51 1 2.0538 0.6342 2.6088 52 1 2.5737 2.2317 3.1970 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715472226.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:59:36 Heat of formation + Delta-G solvation = 37.295855 kcal Electronic energy + Delta-G solvation = -31082.588296 eV Core-core repulsion = 27276.729499 eV Total energy + Delta-G solvation = -3805.858797 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.33567 -41.05454 -38.24578 -36.39338 -35.08386 -34.37950 -33.59352 -32.48000 -31.88969 -30.30846 -28.50744 -27.25492 -26.92458 -25.68589 -24.54586 -23.90580 -22.50798 -22.28523 -21.09300 -20.51824 -19.22078 -18.90915 -17.82476 -17.04546 -16.77854 -16.56726 -16.12930 -15.76765 -15.53437 -15.45591 -15.32172 -14.98154 -14.71049 -14.46253 -14.19785 -14.06596 -13.89710 -13.84322 -13.64487 -13.60221 -13.42032 -13.24204 -12.96875 -12.93099 -12.83698 -12.74102 -12.66146 -12.43768 -12.33171 -12.08603 -12.05172 -11.90010 -11.79750 -11.58369 -11.42497 -11.06022 -10.85782 -9.78015 -9.38692 -9.24362 -8.94618 -8.57467 -7.81074 -4.99865 1.06239 1.41758 1.44969 1.54350 1.64673 1.96747 2.43382 2.61622 2.67951 3.51771 3.76070 3.81353 3.85859 3.88411 3.98873 4.08990 4.15883 4.17017 4.28032 4.35352 4.37669 4.45428 4.46639 4.49183 4.60157 4.63361 4.65452 4.72065 4.84860 4.85240 4.88254 4.91086 4.93719 4.98003 5.03669 5.11395 5.13436 5.18901 5.24400 5.27589 5.30304 5.32402 5.38808 5.44894 5.53025 5.59438 5.90981 6.01299 6.24456 6.39715 6.51269 6.86797 7.45045 7.78951 8.27223 8.50321 9.44368 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.008194 B = 0.005412 C = 0.003621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3416.310597 B = 5172.717874 C = 7730.966990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.088 3.912 3 N -0.438 5.438 4 C -0.004 4.004 5 C -0.191 4.191 6 C -0.248 4.248 7 C 0.548 3.452 8 O -0.517 6.517 9 N -0.610 5.610 10 C 0.100 3.900 11 C -0.125 4.125 12 C -0.107 4.107 13 C -0.090 4.090 14 H 0.062 0.938 15 C -0.143 4.143 16 C 0.154 3.846 17 H 0.052 0.948 18 C 0.166 3.834 19 N -0.704 5.704 20 C -0.205 4.205 21 H 0.061 0.939 22 C -0.088 4.088 23 N -0.976 5.976 24 Si 0.967 3.033 25 H -0.270 1.270 26 H -0.300 1.300 27 H -0.292 1.292 28 C 0.073 3.927 29 C -0.086 4.086 30 H 0.064 0.936 31 H 0.096 0.904 32 H 0.049 0.951 33 H 0.116 0.884 34 H 0.089 0.911 35 H 0.203 0.797 36 H 0.149 0.851 37 H 0.063 0.937 38 H 0.102 0.898 39 H 0.056 0.944 40 H 0.099 0.901 41 H 0.086 0.914 42 H 0.067 0.933 43 H 0.057 0.943 44 H 0.079 0.921 45 H 0.044 0.956 46 H 0.016 0.984 47 H 0.020 0.980 48 H 0.364 0.636 49 H 0.243 0.757 50 H 0.082 0.918 51 H 0.082 0.918 52 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.628 -2.831 -12.188 24.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.032 4.032 3 N -0.114 5.114 4 C -0.131 4.131 5 C -0.215 4.215 6 C -0.258 4.258 7 C 0.337 3.663 8 O -0.392 6.392 9 N -0.345 5.345 10 C -0.022 4.022 11 C -0.163 4.163 12 C -0.144 4.144 13 C -0.110 4.110 14 H 0.081 0.919 15 C -0.200 4.200 16 C 0.050 3.950 17 H 0.069 0.931 18 C 0.040 3.960 19 N -0.344 5.344 20 C -0.338 4.338 21 H 0.079 0.921 22 C -0.278 4.278 23 N -0.629 5.629 24 Si 0.798 3.202 25 H -0.195 1.195 26 H -0.228 1.228 27 H -0.219 1.219 28 C -0.043 4.043 29 C -0.143 4.143 30 H 0.083 0.917 31 H 0.114 0.886 32 H 0.068 0.932 33 H 0.134 0.866 34 H 0.107 0.893 35 H 0.220 0.780 36 H 0.166 0.834 37 H 0.082 0.918 38 H 0.120 0.880 39 H 0.075 0.925 40 H 0.118 0.882 41 H 0.104 0.896 42 H 0.085 0.915 43 H 0.076 0.924 44 H 0.098 0.902 45 H 0.063 0.937 46 H 0.034 0.966 47 H 0.037 0.963 48 H 0.195 0.805 49 H 0.052 0.948 50 H 0.101 0.899 51 H 0.101 0.899 52 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -21.463 -3.309 -11.409 24.531 hybrid contribution 1.418 -0.434 0.588 1.595 sum -20.045 -3.743 -10.821 23.085 Atomic orbital electron populations 1.22108 0.93079 1.04103 1.02577 1.22185 0.96507 0.78813 1.05685 1.43874 1.50032 1.12644 1.04883 1.22153 1.06290 0.92243 0.92398 1.22129 1.08362 0.98929 0.92036 1.20402 1.15368 0.95242 0.94824 1.18037 0.78628 0.83098 0.86549 1.91097 1.40611 1.84688 1.22813 1.47819 1.58760 1.04324 1.23588 1.22201 0.93634 1.01710 0.84649 1.21959 0.96691 0.95841 1.01814 1.21561 1.00792 0.97586 0.94482 1.21400 0.95452 0.95822 0.98298 0.91909 1.21819 1.01950 0.96393 0.99857 1.21350 0.95812 0.86693 0.91154 0.93052 1.20953 0.87574 0.92893 0.94615 1.42309 1.17865 1.69505 1.04688 1.19531 0.97876 1.28178 0.88234 0.92073 1.25376 0.99959 1.03923 0.98547 1.69862 1.21523 1.51626 1.19937 0.85123 0.78671 0.76989 0.79459 1.19461 1.22753 1.21903 1.20197 1.03305 0.90690 0.90131 1.20374 1.02440 1.01952 0.89558 0.91719 0.88556 0.93203 0.86617 0.89298 0.78043 0.83366 0.91836 0.88047 0.92500 0.88218 0.89576 0.91460 0.92411 0.90183 0.93727 0.96650 0.96255 0.80456 0.94843 0.89927 0.89923 0.92374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.83 10.24 71.98 0.74 -1.09 16 2 C 0.09 1.30 6.45 86.38 0.56 1.85 16 3 N -0.44 -10.51 2.69 -509.92 -1.37 -11.88 16 4 C 0.00 -0.09 11.33 83.12 0.94 0.85 16 5 C -0.19 -5.62 8.64 23.62 0.20 -5.42 16 6 C -0.25 -9.29 5.42 -19.04 -0.10 -9.39 16 7 C 0.55 24.19 6.91 86.62 0.60 24.79 16 8 O -0.52 -28.06 9.37 -4.11 -0.04 -28.10 16 9 N -0.61 -22.43 2.97 -798.21 -2.37 -24.79 16 10 C 0.10 2.64 5.52 86.51 0.48 3.12 16 11 C -0.12 -2.52 6.10 30.81 0.19 -2.33 16 12 C -0.11 -2.20 5.16 30.62 0.16 -2.05 16 13 C -0.09 -2.51 2.34 -10.72 -0.03 -2.54 16 14 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 15 C -0.14 -3.61 8.98 71.98 0.65 -2.96 16 16 C 0.15 5.83 2.38 44.97 0.11 5.93 16 17 H 0.05 2.07 8.14 -2.38 -0.02 2.05 16 18 C 0.17 8.02 4.81 86.38 0.42 8.43 16 19 N -0.70 -41.68 3.26 -343.44 -1.12 -42.79 16 20 C -0.21 -13.15 9.78 84.03 0.82 -12.33 16 21 H 0.06 3.85 7.83 -2.91 -0.02 3.82 16 22 C -0.09 -5.67 5.50 84.86 0.47 -5.21 16 23 N -0.98 -66.84 13.06 21.65 0.28 -66.56 16 24 Si 0.97 51.89 29.55 68.60 2.03 53.92 16 25 H -0.27 -13.70 7.11 99.48 0.71 -12.99 16 26 H -0.30 -16.10 7.11 99.48 0.71 -15.40 16 27 H -0.29 -15.29 7.11 99.48 0.71 -14.58 16 28 C 0.07 2.38 6.88 41.78 0.29 2.67 16 29 C -0.09 -2.66 9.86 71.24 0.70 -1.95 16 30 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.12 1.13 8.11 -2.39 -0.02 1.11 16 34 H 0.09 1.31 7.05 -2.38 -0.02 1.29 16 35 H 0.20 2.78 8.06 -2.91 -0.02 2.76 16 36 H 0.15 3.98 7.25 -2.91 -0.02 3.96 16 37 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 38 H 0.10 2.59 4.53 -2.38 -0.01 2.58 16 39 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 41 H 0.09 1.39 8.14 -2.38 -0.02 1.37 16 42 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 43 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 44 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 45 H 0.04 1.30 6.41 -2.39 -0.02 1.29 16 46 H 0.02 0.75 6.22 -2.39 -0.01 0.74 16 47 H 0.02 1.04 6.24 -2.39 -0.01 1.03 16 48 H 0.36 23.32 7.10 -92.71 -0.66 22.66 16 49 H 0.24 16.06 8.31 -92.71 -0.77 15.29 16 50 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 51 H 0.08 2.07 7.01 -2.39 -0.02 2.05 16 52 H 0.06 2.36 6.60 -2.38 -0.02 2.34 16 Total: -1.00 -86.75 395.07 4.85 -81.91 By element: Atomic # 1 Polarization: 35.68 SS G_CDS: 0.25 Total: 35.93 kcal Atomic # 6 Polarization: -4.81 SS G_CDS: 7.18 Total: 2.37 kcal Atomic # 7 Polarization: -141.45 SS G_CDS: -4.57 Total: -146.03 kcal Atomic # 8 Polarization: -28.06 SS G_CDS: -0.04 Total: -28.10 kcal Atomic # 14 Polarization: 51.89 SS G_CDS: 2.03 Total: 53.92 kcal Total: -86.75 4.85 -81.91 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715472226.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.203 kcal (2) G-P(sol) polarization free energy of solvation -86.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.907 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds