Wall clock time and date at job start Tue Mar 31 2020 18:44:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46902 * 111.00052 * 2 1 4 4 C 1.46894 * 111.00244 * 123.95927 * 2 1 3 5 5 C 1.53000 * 109.47133 * 66.04415 * 4 2 1 6 6 C 1.50707 * 109.47256 * 180.02562 * 5 4 2 7 7 C 1.38354 * 119.85217 * 270.25635 * 6 5 4 8 8 C 1.37958 * 120.14519 * 180.30378 * 7 6 5 9 9 C 1.39580 * 119.84678 * 359.44103 * 8 7 6 10 10 C 1.47851 * 120.14237 * 180.30538 * 9 8 7 11 11 O 1.21560 * 119.99718 * 329.09947 * 10 9 8 12 12 N 1.34775 * 120.00311 * 149.10456 * 10 9 8 13 13 C 1.46496 * 119.99911 * 3.76699 * 12 10 9 14 14 C 1.46494 * 120.00073 * 183.77547 * 12 10 9 15 15 C 1.53007 * 109.47318 * 89.99303 * 14 12 10 16 16 N 1.46499 * 109.46826 * 179.97438 * 15 14 12 17 17 C 1.46497 * 120.00004 * 90.00607 * 16 15 14 18 18 C 1.36937 * 119.99984 * 270.00128 * 16 15 14 19 19 H 1.07997 * 120.00662 * 23.32873 * 18 16 15 20 20 C 1.38815 * 119.99597 * 203.32861 * 18 16 15 21 21 N 1.31617 * 120.00488 * 12.09489 * 20 18 16 22 22 Si 1.86804 * 119.99847 * 192.08860 * 20 18 16 23 23 H 1.48499 * 109.47154 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.47043 * 120.00246 * 22 20 18 25 25 H 1.48500 * 109.47438 * 240.00417 * 22 20 18 26 26 C 1.39575 * 119.71736 * 0.27990 * 9 8 7 27 27 C 1.37963 * 119.84939 * 359.97438 * 26 9 8 28 28 H 1.09001 * 109.47098 * 296.04178 * 1 2 3 29 29 H 1.08999 * 109.47288 * 56.04013 * 1 2 3 30 30 H 1.09001 * 109.47731 * 176.04228 * 1 2 3 31 31 H 1.08999 * 109.47005 * 183.95160 * 3 2 1 32 32 H 1.08996 * 109.47618 * 303.96010 * 3 2 1 33 33 H 1.09006 * 109.46773 * 63.95848 * 3 2 1 34 34 H 1.09000 * 109.46986 * 306.04552 * 4 2 1 35 35 H 1.08996 * 109.47638 * 186.04144 * 4 2 1 36 36 H 1.09001 * 109.47459 * 59.99823 * 5 4 2 37 37 H 1.09005 * 109.47058 * 299.99956 * 5 4 2 38 38 H 1.08003 * 119.93365 * 0.02562 * 7 6 5 39 39 H 1.07996 * 120.07683 * 179.71660 * 8 7 6 40 40 H 1.08999 * 109.46862 * 93.81661 * 13 12 10 41 41 H 1.09004 * 109.47265 * 213.81675 * 13 12 10 42 42 H 1.09001 * 109.47236 * 333.81595 * 13 12 10 43 43 H 1.08996 * 109.47327 * 209.99668 * 14 12 10 44 44 H 1.09000 * 109.47077 * 329.99286 * 14 12 10 45 45 H 1.08994 * 109.47300 * 299.99654 * 15 14 12 46 46 H 1.08995 * 109.46598 * 60.00521 * 15 14 12 47 47 H 1.09000 * 109.47513 * 87.10735 * 17 16 15 48 48 H 1.09002 * 109.47459 * 207.10980 * 17 16 15 49 49 H 1.09004 * 109.46901 * 327.10687 * 17 16 15 50 50 H 0.96996 * 120.00143 * 179.97438 * 21 20 18 51 51 H 1.07997 * 120.07711 * 180.02562 * 26 9 8 52 52 H 1.07992 * 119.92694 * 179.97438 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9955 -0.7660 1.1374 5 6 1.6315 -2.2427 0.9701 6 6 2.1710 -3.0285 2.1374 7 6 3.4436 -3.5678 2.0752 8 6 3.9412 -4.2935 3.1377 9 6 3.1621 -4.4732 4.2818 10 6 3.6915 -5.2441 5.4270 11 8 4.4751 -6.1538 5.2370 12 7 3.3052 -4.9384 6.6815 13 6 2.2987 -3.8976 6.9048 14 6 3.8919 -5.6466 7.8217 15 6 5.1400 -4.9007 8.2981 16 7 5.7263 -5.6088 9.4388 17 6 6.7329 -6.6497 9.2161 18 6 5.3336 -5.2975 10.7132 19 1 4.3717 -4.8376 10.8848 20 6 6.1721 -5.5732 11.7846 21 7 7.4266 -5.9082 11.5694 22 14 5.5199 -5.4687 13.5320 23 1 4.0882 -5.0753 13.5033 24 1 5.6559 -6.7925 14.1911 25 1 6.2969 -4.4558 14.2906 26 6 1.8813 -3.9216 4.3404 27 6 1.3937 -3.2025 3.2687 28 1 -0.3633 0.4512 0.9233 29 1 -0.3634 0.5741 -0.8524 30 1 -0.3634 -1.0252 -0.0709 31 1 3.0828 1.3432 -0.0708 32 1 1.5898 1.9164 -0.8523 33 1 1.7044 1.8723 0.9234 34 1 1.5611 -0.3874 2.0627 35 1 3.0797 -0.6613 1.1755 36 1 2.0657 -2.6214 0.0448 37 1 0.5471 -2.3475 0.9321 38 1 4.0472 -3.4242 1.1911 39 1 4.9330 -4.7179 3.0861 40 1 1.3116 -4.3551 6.9711 41 1 2.5190 -3.3725 7.8343 42 1 2.3166 -3.1908 6.0752 43 1 3.1654 -5.6942 8.6328 44 1 4.1659 -6.6575 7.5196 45 1 5.8666 -4.8532 7.4871 46 1 4.8660 -3.8900 8.6002 47 1 7.7218 -6.1941 9.1662 48 1 6.7035 -7.3653 10.0378 49 1 6.5221 -7.1642 8.2785 50 1 8.0126 -6.1004 12.3181 51 1 1.2737 -4.0567 5.2229 52 1 0.4028 -2.7755 3.3125 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715959508.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:44:03 Heat of formation + Delta-G solvation = 18.982667 kcal Electronic energy + Delta-G solvation = -28164.410602 eV Core-core repulsion = 24357.757686 eV Total energy + Delta-G solvation = -3806.652916 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.54850 -39.82418 -38.31874 -37.83546 -36.57940 -34.34202 -33.40972 -32.07862 -30.72901 -29.48631 -28.42768 -28.07467 -27.74887 -26.20036 -25.01376 -23.61677 -23.06080 -22.36955 -21.61858 -20.66447 -18.80827 -18.30488 -17.66002 -17.15237 -16.85077 -16.64024 -16.30739 -16.03943 -15.77646 -15.68160 -15.52615 -15.35447 -14.99574 -14.62430 -14.54026 -14.12019 -14.06674 -13.98218 -13.93615 -13.77128 -13.22932 -13.14217 -13.05519 -12.87157 -12.81345 -12.73723 -12.57951 -12.47264 -12.40828 -12.16278 -12.14325 -11.93425 -11.92058 -11.66073 -11.58079 -10.95063 -10.68852 -9.96562 -9.80443 -9.66573 -9.28862 -8.78822 -7.86576 -5.36519 -0.10278 0.41625 1.46968 1.48412 1.59279 1.70871 1.98290 2.51119 2.76784 3.05431 3.29298 3.46656 3.71842 3.83111 3.96411 3.99207 4.10839 4.13123 4.25290 4.26070 4.35070 4.37443 4.46200 4.51017 4.53671 4.61024 4.65104 4.65681 4.73673 4.77279 4.79144 4.82536 4.87450 4.90305 4.97314 5.04209 5.06215 5.07691 5.12268 5.22483 5.26914 5.33324 5.39042 5.50839 5.55744 5.62267 5.63436 5.94498 6.08705 6.12230 6.29451 6.37296 7.07998 7.10884 7.79002 8.27654 9.19723 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.021211 B = 0.001931 C = 0.001875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.764502 B =14499.873311 C =14930.320041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.561 5.561 3 C 0.022 3.978 4 C 0.062 3.938 5 C -0.072 4.072 6 C -0.056 4.056 7 C -0.122 4.122 8 C -0.079 4.079 9 C -0.151 4.151 10 C 0.544 3.456 11 O -0.589 6.589 12 N -0.603 5.603 13 C 0.054 3.946 14 C 0.111 3.889 15 C 0.148 3.852 16 N -0.616 5.616 17 C 0.179 3.821 18 C -0.263 4.263 19 H 0.081 0.919 20 C -0.058 4.058 21 N -0.944 5.944 22 Si 0.977 3.023 23 H -0.259 1.259 24 H -0.292 1.292 25 H -0.293 1.293 26 C -0.095 4.095 27 C -0.120 4.120 28 H 0.027 0.973 29 H 0.072 0.928 30 H 0.078 0.922 31 H 0.068 0.932 32 H 0.076 0.924 33 H 0.025 0.975 34 H 0.037 0.963 35 H 0.071 0.929 36 H 0.083 0.917 37 H 0.089 0.911 38 H 0.144 0.856 39 H 0.114 0.886 40 H 0.087 0.913 41 H 0.076 0.924 42 H 0.104 0.896 43 H 0.086 0.914 44 H 0.052 0.948 45 H 0.021 0.979 46 H 0.053 0.947 47 H -0.006 1.006 48 H 0.035 0.965 49 H 0.012 0.988 50 H 0.249 0.751 51 H 0.163 0.837 52 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.423 13.840 -23.937 33.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.285 5.285 3 C -0.126 4.126 4 C -0.066 4.066 5 C -0.109 4.109 6 C -0.056 4.056 7 C -0.140 4.140 8 C -0.098 4.098 9 C -0.154 4.154 10 C 0.335 3.665 11 O -0.471 6.471 12 N -0.334 5.334 13 C -0.087 4.087 14 C -0.014 4.014 15 C 0.021 3.979 16 N -0.340 5.340 17 C 0.034 3.966 18 C -0.393 4.393 19 H 0.099 0.901 20 C -0.253 4.253 21 N -0.591 5.591 22 Si 0.805 3.195 23 H -0.183 1.183 24 H -0.219 1.219 25 H -0.220 1.220 26 C -0.113 4.113 27 C -0.138 4.138 28 H 0.046 0.954 29 H 0.091 0.909 30 H 0.096 0.904 31 H 0.087 0.913 32 H 0.094 0.906 33 H 0.044 0.956 34 H 0.055 0.945 35 H 0.089 0.911 36 H 0.102 0.898 37 H 0.107 0.893 38 H 0.162 0.838 39 H 0.132 0.868 40 H 0.105 0.895 41 H 0.095 0.905 42 H 0.122 0.878 43 H 0.104 0.896 44 H 0.071 0.929 45 H 0.040 0.960 46 H 0.072 0.928 47 H 0.012 0.988 48 H 0.054 0.946 49 H 0.031 0.969 50 H 0.058 0.942 51 H 0.180 0.820 52 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -18.755 13.128 -24.321 33.401 hybrid contribution 0.484 -0.011 1.959 2.018 sum -18.271 13.117 -22.363 31.717 Atomic orbital electron populations 1.22509 0.86597 1.03048 1.00858 1.61995 1.08940 1.14394 1.43183 1.22413 1.00946 0.88323 1.00881 1.22075 1.00262 0.92838 0.91415 1.20607 1.02030 0.92908 0.95361 1.20266 0.93491 0.95967 0.95922 1.21183 0.96252 0.98012 0.98558 1.21248 0.99518 0.96778 0.92304 1.19824 0.97704 1.03269 0.94581 1.19035 0.80497 0.83176 0.83814 1.90749 1.37685 1.32901 1.85731 1.47873 1.41676 1.38766 1.05113 1.22769 0.90956 0.90560 1.04412 1.21984 0.96517 0.95911 0.87009 1.21014 0.93312 0.94840 0.88730 1.44079 1.46936 1.40762 1.02225 1.20493 0.90264 0.90246 0.95579 1.19641 0.99496 1.36785 0.83380 0.90123 1.25948 0.95182 1.01611 1.02546 1.70268 1.05290 1.52804 1.30693 0.85056 0.78343 0.76748 0.79369 1.18296 1.21939 1.21968 1.22133 0.93739 0.95089 1.00338 1.21333 1.01124 0.99287 0.92007 0.95414 0.90916 0.90352 0.91325 0.90564 0.95590 0.94453 0.91075 0.89791 0.89289 0.83786 0.86775 0.89464 0.90525 0.87781 0.89551 0.92943 0.96017 0.92849 0.98771 0.94610 0.96925 0.94184 0.81962 0.82477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.32 127.69 1.19 1.33 16 2 N -0.56 -6.13 5.02 -948.87 -4.76 -10.89 16 3 C 0.02 0.21 9.57 127.69 1.22 1.43 16 4 C 0.06 0.67 4.94 86.30 0.43 1.09 16 5 C -0.07 -0.70 5.26 29.85 0.16 -0.54 16 6 C -0.06 -0.77 5.14 -19.81 -0.10 -0.87 16 7 C -0.12 -2.13 9.68 22.23 0.22 -1.92 16 8 C -0.08 -1.93 9.60 22.53 0.22 -1.72 16 9 C -0.15 -3.85 5.49 -20.09 -0.11 -3.96 16 10 C 0.54 18.49 7.45 86.79 0.65 19.13 16 11 O -0.59 -25.69 16.29 -3.90 -0.06 -25.76 16 12 N -0.60 -18.47 2.87 -850.20 -2.44 -20.92 16 13 C 0.05 1.04 8.79 127.77 1.12 2.17 16 14 C 0.11 4.21 5.78 86.38 0.50 4.71 16 15 C 0.15 6.60 6.01 86.38 0.52 7.12 16 16 N -0.62 -32.89 2.92 -726.94 -2.12 -35.01 16 17 C 0.18 9.83 8.99 127.77 1.15 10.98 16 18 C -0.26 -14.57 9.65 84.03 0.81 -13.76 16 19 H 0.08 4.17 7.86 -2.91 -0.02 4.15 16 20 C -0.06 -3.32 5.07 84.86 0.43 -2.89 16 21 N -0.94 -57.62 10.73 21.65 0.23 -57.39 16 22 Si 0.98 45.03 29.57 68.60 2.03 47.06 16 23 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 24 H -0.29 -13.54 7.11 99.48 0.71 -12.84 16 25 H -0.29 -13.50 7.11 99.48 0.71 -12.80 16 26 C -0.10 -1.64 7.45 22.53 0.17 -1.47 16 27 C -0.12 -1.54 9.68 22.23 0.22 -1.33 16 28 H 0.03 0.21 8.14 -2.39 -0.02 0.19 16 29 H 0.07 0.50 8.12 -2.39 -0.02 0.48 16 30 H 0.08 0.51 6.47 -2.39 -0.02 0.49 16 31 H 0.07 0.65 8.12 -2.39 -0.02 0.63 16 32 H 0.08 0.59 8.12 -2.39 -0.02 0.57 16 33 H 0.03 0.24 8.14 -2.38 -0.02 0.22 16 34 H 0.04 0.41 8.12 -2.39 -0.02 0.39 16 35 H 0.07 0.86 8.06 -2.39 -0.02 0.84 16 36 H 0.08 0.86 8.09 -2.39 -0.02 0.85 16 37 H 0.09 0.66 6.49 -2.38 -0.02 0.64 16 38 H 0.14 1.96 8.06 -2.91 -0.02 1.94 16 39 H 0.11 3.10 7.94 -2.91 -0.02 3.07 16 40 H 0.09 1.22 7.39 -2.39 -0.02 1.20 16 41 H 0.08 1.49 8.10 -2.38 -0.02 1.47 16 42 H 0.10 1.65 4.77 -2.39 -0.01 1.64 16 43 H 0.09 3.08 8.07 -2.39 -0.02 3.06 16 44 H 0.05 2.27 7.37 -2.39 -0.02 2.25 16 45 H 0.02 1.02 8.07 -2.39 -0.02 1.00 16 46 H 0.05 2.26 8.04 -2.39 -0.02 2.24 16 47 H -0.01 -0.36 7.78 -2.39 -0.02 -0.37 16 48 H 0.04 2.06 6.79 -2.39 -0.02 2.05 16 49 H 0.01 0.63 8.09 -2.38 -0.02 0.61 16 50 H 0.25 14.66 8.31 -92.71 -0.77 13.89 16 51 H 0.16 2.12 4.70 -2.91 -0.01 2.10 16 52 H 0.16 1.05 8.06 -2.91 -0.02 1.03 16 Total: -1.00 -75.24 413.87 2.52 -72.72 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: 0.88 Total: 10.68 kcal Atomic # 6 Polarization: 10.73 SS G_CDS: 8.78 Total: 19.50 kcal Atomic # 7 Polarization: -115.12 SS G_CDS: -9.10 Total: -124.21 kcal Atomic # 8 Polarization: -25.69 SS G_CDS: -0.06 Total: -25.76 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.06 kcal Total: -75.24 2.52 -72.72 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715959508.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.703 kcal (2) G-P(sol) polarization free energy of solvation -75.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.720 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds