Wall clock time and date at job start Tue Mar 31 2020 17:46:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.47060 * 2 1 4 4 C 1.52993 * 109.47437 * 239.99551 * 2 1 3 5 5 N 1.46502 * 109.47426 * 185.00067 * 4 2 1 6 6 C 1.46498 * 119.99833 * 270.00353 * 5 4 2 7 7 C 1.36937 * 120.00171 * 89.99490 * 5 4 2 8 8 H 1.08004 * 119.99940 * 20.31128 * 7 5 4 9 9 C 1.38811 * 120.00036 * 200.30952 * 7 5 4 10 10 N 1.31613 * 120.00404 * 15.01642 * 9 7 5 11 11 Si 1.86800 * 119.99746 * 195.01716 * 9 7 5 12 12 H 1.48504 * 109.47123 * 85.00170 * 11 9 7 13 13 H 1.48496 * 109.47191 * 204.99974 * 11 9 7 14 14 H 1.48502 * 109.47261 * 325.00152 * 11 9 7 15 15 N 1.46502 * 109.46996 * 119.99340 * 2 1 3 16 16 C 1.34779 * 119.99747 * 275.00097 * 15 2 1 17 17 O 1.21274 * 120.00620 * 0.02562 * 16 15 2 18 18 C 1.50701 * 119.99875 * 180.02562 * 16 15 2 19 19 C 1.52994 * 109.47539 * 180.02562 * 18 16 15 20 20 C 1.50695 * 109.47626 * 179.97438 * 19 18 16 21 21 C 1.38283 * 119.92866 * 269.73127 * 20 19 18 22 22 C 1.38100 * 120.07555 * 179.72514 * 21 20 19 23 23 C 1.38917 * 119.92578 * 0.54247 * 22 21 20 24 24 N 1.39673 * 120.07601 * 179.70753 * 23 22 21 25 25 C 1.46501 * 120.00097 * 180.02562 * 24 23 22 26 26 C 1.46502 * 120.00125 * 0.02562 * 24 23 22 27 27 C 1.38914 * 119.84768 * 359.72935 * 23 22 21 28 28 C 1.38105 * 119.92427 * 359.97438 * 27 23 22 29 29 H 1.09001 * 109.47050 * 60.00763 * 1 2 3 30 30 H 1.09003 * 109.47191 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47572 * 300.00728 * 1 2 3 32 32 H 1.09000 * 109.46899 * 305.00025 * 4 2 1 33 33 H 1.08999 * 109.47535 * 65.00144 * 4 2 1 34 34 H 1.08997 * 109.47395 * 95.10447 * 6 5 4 35 35 H 1.09008 * 109.46994 * 215.10113 * 6 5 4 36 36 H 1.09005 * 109.47349 * 335.09745 * 6 5 4 37 37 H 0.96992 * 120.00432 * 180.02562 * 10 9 7 38 38 H 0.96991 * 120.00347 * 95.00344 * 15 2 1 39 39 H 1.09004 * 109.47312 * 59.99642 * 18 16 15 40 40 H 1.09005 * 109.47208 * 299.99999 * 18 16 15 41 41 H 1.09005 * 109.46912 * 59.99945 * 19 18 16 42 42 H 1.09003 * 109.47308 * 300.00093 * 19 18 16 43 43 H 1.07999 * 119.96231 * 359.97176 * 21 20 19 44 44 H 1.08001 * 120.03961 * 180.26968 * 22 21 20 45 45 H 1.09004 * 109.46965 * 59.99418 * 25 24 23 46 46 H 1.08992 * 109.47288 * 179.97438 * 25 24 23 47 47 H 1.09000 * 109.46717 * 300.00181 * 25 24 23 48 48 H 1.08998 * 109.46922 * 90.00030 * 26 24 23 49 49 H 1.09004 * 109.47283 * 210.00098 * 26 24 23 50 50 H 1.08999 * 109.46846 * 330.00127 * 26 24 23 51 51 H 1.07995 * 120.03501 * 180.02562 * 27 23 22 52 52 H 1.07999 * 119.96012 * 179.97438 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2491 5 7 3.5001 -0.8264 -1.1904 6 6 4.3343 0.2340 -1.7611 7 6 4.0850 -1.9158 -0.6020 8 1 3.5230 -2.8298 -0.4786 9 6 5.4004 -1.8454 -0.1641 10 7 5.9903 -0.6757 -0.0377 11 14 6.3333 -3.4110 0.2459 12 1 6.9259 -3.9733 -0.9942 13 1 7.4147 -3.1032 1.2159 14 1 5.4008 -4.4012 0.8420 15 7 2.0183 -0.6905 1.1963 16 6 2.1470 -0.0179 2.3572 17 8 1.8581 1.1586 2.4117 18 6 2.6498 -0.7281 3.5876 19 6 2.7005 0.2549 4.7589 20 6 3.2028 -0.4553 5.9894 21 6 2.3067 -1.0656 6.8478 22 6 2.7641 -1.7222 7.9734 23 6 4.1251 -1.7594 8.2489 24 7 4.5906 -2.4174 9.3896 25 6 6.0263 -2.4552 9.6789 26 6 3.6432 -3.0696 10.2969 27 6 5.0221 -1.1405 7.3874 28 6 4.5584 -0.4909 6.2604 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.6054 -1.7199 -1.2949 33 1 1.7518 -0.1585 -2.1369 34 1 4.6152 0.9371 -0.9770 35 1 5.2331 -0.2046 -2.1948 36 1 3.7756 0.7584 -2.5363 37 1 6.9095 -0.6266 0.2679 38 1 2.2490 -1.6315 1.1529 39 1 3.6492 -1.1199 3.3981 40 1 1.9776 -1.5504 3.8328 41 1 1.7010 0.6463 4.9483 42 1 3.3725 1.0775 4.5141 43 1 1.2483 -1.0322 6.6356 44 1 2.0640 -2.2023 8.6411 45 1 6.4015 -1.4378 9.7900 46 1 6.1964 -3.0078 10.6028 47 1 6.5492 -2.9476 8.8590 48 1 3.4937 -4.1031 9.9844 49 1 4.0404 -3.0509 11.3119 50 1 2.6908 -2.5403 10.2696 51 1 6.0809 -1.1679 7.5985 52 1 5.2552 -0.0091 5.5905 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716485625.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:46:15 Heat of formation + Delta-G solvation = -7.100012 kcal Electronic energy + Delta-G solvation = -28935.141085 eV Core-core repulsion = 25127.357139 eV Total energy + Delta-G solvation = -3807.783946 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.75 seconds Orbital eigenvalues (eV) -40.85744 -40.37801 -38.10606 -37.45590 -35.66632 -34.19778 -33.11579 -32.03243 -31.69923 -29.89370 -28.98059 -28.02755 -27.34700 -26.41547 -24.19925 -23.38038 -23.24987 -21.76348 -21.16692 -20.95724 -18.74719 -18.29607 -17.79331 -17.06012 -16.93288 -16.69084 -16.16446 -15.96205 -15.89174 -15.58784 -15.13265 -15.07175 -14.85147 -14.60126 -14.45831 -14.37471 -13.87208 -13.78976 -13.69399 -13.46234 -13.21583 -13.09283 -12.98744 -12.87390 -12.78639 -12.73976 -12.66980 -12.50850 -12.15287 -12.11428 -12.05689 -11.93834 -11.91137 -11.64794 -11.56878 -10.74839 -10.57568 -10.46540 -9.81137 -9.73591 -8.76453 -8.12561 -7.75244 -5.20391 0.55398 0.65195 1.48354 1.51070 1.57298 1.88363 2.27454 2.53251 2.58235 2.97339 3.39822 3.72766 3.89523 3.91469 4.10139 4.16534 4.18874 4.21395 4.23849 4.40945 4.43615 4.49592 4.52094 4.58574 4.59680 4.67633 4.73187 4.77794 4.78570 4.86131 4.86789 4.89255 4.90999 4.94748 5.03486 5.04322 5.19757 5.22815 5.24000 5.33777 5.39497 5.43728 5.53392 5.67910 5.74691 5.87087 5.88557 5.96880 6.36218 6.38541 6.56808 6.86827 7.19253 7.53284 7.92457 8.38181 9.28378 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.011484 B = 0.003040 C = 0.002575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2437.687452 B = 9207.000665 C =10870.050400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.120 3.880 3 H 0.036 0.964 4 C 0.141 3.859 5 N -0.612 5.612 6 C 0.178 3.822 7 C -0.245 4.245 8 H 0.081 0.919 9 C -0.046 4.046 10 N -0.934 5.934 11 Si 0.952 3.048 12 H -0.292 1.292 13 H -0.306 1.306 14 H -0.261 1.261 15 N -0.690 5.690 16 C 0.509 3.491 17 O -0.600 6.600 18 C -0.123 4.123 19 C -0.043 4.043 20 C -0.146 4.146 21 C -0.069 4.069 22 C -0.198 4.198 23 C 0.199 3.801 24 N -0.647 5.647 25 C 0.092 3.908 26 C 0.089 3.911 27 C -0.203 4.203 28 C -0.082 4.082 29 H 0.078 0.922 30 H 0.071 0.929 31 H 0.039 0.961 32 H 0.069 0.931 33 H 0.072 0.928 34 H -0.008 1.008 35 H 0.017 0.983 36 H 0.028 0.972 37 H 0.242 0.758 38 H 0.405 0.595 39 H 0.080 0.920 40 H 0.113 0.887 41 H 0.074 0.926 42 H 0.049 0.951 43 H 0.138 0.862 44 H 0.142 0.858 45 H 0.052 0.948 46 H 0.095 0.905 47 H 0.047 0.953 48 H 0.050 0.950 49 H 0.084 0.916 50 H 0.072 0.928 51 H 0.126 0.874 52 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.908 -5.939 17.557 20.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.012 3.988 3 H 0.054 0.946 4 C 0.015 3.985 5 N -0.334 5.334 6 C 0.033 3.967 7 C -0.376 4.376 8 H 0.099 0.901 9 C -0.242 4.242 10 N -0.581 5.581 11 Si 0.782 3.218 12 H -0.220 1.220 13 H -0.233 1.233 14 H -0.186 1.186 15 N -0.338 5.338 16 C 0.297 3.703 17 O -0.483 6.483 18 C -0.163 4.163 19 C -0.081 4.081 20 C -0.148 4.148 21 C -0.088 4.088 22 C -0.220 4.220 23 C 0.097 3.903 24 N -0.359 5.359 25 C -0.051 4.051 26 C -0.053 4.053 27 C -0.226 4.226 28 C -0.101 4.101 29 H 0.097 0.903 30 H 0.090 0.910 31 H 0.058 0.942 32 H 0.087 0.913 33 H 0.090 0.910 34 H 0.010 0.990 35 H 0.036 0.964 36 H 0.046 0.954 37 H 0.051 0.949 38 H 0.241 0.759 39 H 0.098 0.902 40 H 0.131 0.869 41 H 0.093 0.907 42 H 0.067 0.933 43 H 0.156 0.844 44 H 0.160 0.840 45 H 0.070 0.930 46 H 0.114 0.886 47 H 0.066 0.934 48 H 0.069 0.931 49 H 0.103 0.897 50 H 0.090 0.910 51 H 0.143 0.857 52 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -7.880 -5.216 17.775 20.131 hybrid contribution 1.518 -0.621 -0.028 1.641 sum -6.361 -5.837 17.747 19.736 Atomic orbital electron populations 1.22011 0.93799 1.02626 1.01936 1.21681 0.94113 0.96048 0.86957 0.94550 1.21381 0.83189 0.99401 0.94557 1.44150 1.00895 1.22065 1.66277 1.20489 0.92720 0.90003 0.93495 1.19432 0.95813 0.90657 1.31651 0.90089 1.25570 0.99698 0.98165 1.00741 1.70277 1.12329 1.23644 1.51891 0.85499 0.78682 0.80694 0.76912 1.21964 1.23342 1.18567 1.45814 1.64930 1.14350 1.08752 1.21037 0.76545 0.86867 0.85885 1.90580 1.53588 1.17783 1.86353 1.21582 1.03001 0.99859 0.91828 1.20020 1.01572 0.95904 0.90596 1.19631 0.93607 1.03679 0.97925 1.20985 0.99792 0.94980 0.93015 1.20877 0.93595 1.06922 1.00620 1.17994 0.93058 0.91896 0.87375 1.46559 1.07056 1.58648 1.23630 1.21701 0.79734 1.01763 1.01862 1.21814 0.93424 0.96864 0.93225 1.20719 0.99446 1.05298 0.97091 1.20928 0.95317 0.97607 0.96261 0.90267 0.91006 0.94187 0.91319 0.90998 0.98966 0.96374 0.95371 0.94900 0.75875 0.90154 0.86906 0.90693 0.93263 0.84425 0.83995 0.92968 0.88622 0.93406 0.93147 0.89717 0.90965 0.85659 0.87114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.15 9.48 71.98 0.68 -3.47 16 2 C 0.12 4.45 2.88 44.99 0.13 4.58 16 3 H 0.04 1.64 7.58 -2.38 -0.02 1.62 16 4 C 0.14 5.19 5.36 86.38 0.46 5.66 16 5 N -0.61 -28.82 2.82 -726.93 -2.05 -30.87 16 6 C 0.18 8.88 9.02 127.77 1.15 10.03 16 7 C -0.25 -12.26 8.02 84.03 0.67 -11.58 16 8 H 0.08 3.78 7.86 -2.91 -0.02 3.75 16 9 C -0.05 -2.48 5.06 84.86 0.43 -2.05 16 10 N -0.93 -54.68 10.67 21.65 0.23 -54.44 16 11 Si 0.95 43.51 29.58 68.60 2.03 45.54 16 12 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 13 H -0.31 -14.60 7.11 99.48 0.71 -13.89 16 14 H -0.26 -11.01 7.11 99.48 0.71 -10.31 16 15 N -0.69 -26.53 4.49 -442.54 -1.99 -28.51 16 16 C 0.51 20.52 7.79 87.66 0.68 21.20 16 17 O -0.60 -28.11 15.64 -3.01 -0.05 -28.16 16 18 C -0.12 -4.09 5.68 29.85 0.17 -3.92 16 19 C -0.04 -1.37 4.63 29.84 0.14 -1.23 16 20 C -0.15 -4.19 5.14 -19.84 -0.10 -4.29 16 21 C -0.07 -1.66 9.69 22.25 0.22 -1.45 16 22 C -0.20 -4.34 9.21 22.40 0.21 -4.14 16 23 C 0.20 4.66 6.55 38.22 0.25 4.91 16 24 N -0.65 -11.68 3.41 -747.27 -2.55 -14.23 16 25 C 0.09 1.30 9.40 127.77 1.20 2.50 16 26 C 0.09 1.05 10.16 127.77 1.30 2.35 16 27 C -0.20 -5.31 9.31 22.40 0.21 -5.10 16 28 C -0.08 -2.43 9.69 22.25 0.22 -2.21 16 29 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 30 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 31 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.07 2.28 8.03 -2.39 -0.02 2.26 16 33 H 0.07 2.36 7.86 -2.39 -0.02 2.34 16 34 H -0.01 -0.46 7.40 -2.39 -0.02 -0.47 16 35 H 0.02 0.95 7.21 -2.38 -0.02 0.94 16 36 H 0.03 1.19 7.84 -2.38 -0.02 1.17 16 37 H 0.24 14.09 8.31 -92.71 -0.77 13.32 16 38 H 0.41 15.05 7.40 -92.72 -0.69 14.36 16 39 H 0.08 2.94 8.14 -2.38 -0.02 2.93 16 40 H 0.11 3.06 8.14 -2.38 -0.02 3.04 16 41 H 0.07 2.30 8.04 -2.38 -0.02 2.28 16 42 H 0.05 1.79 8.04 -2.39 -0.02 1.77 16 43 H 0.14 2.72 8.06 -2.91 -0.02 2.70 16 44 H 0.14 2.37 6.14 -2.91 -0.02 2.35 16 45 H 0.05 0.74 7.95 -2.38 -0.02 0.72 16 46 H 0.10 0.84 7.79 -2.39 -0.02 0.82 16 47 H 0.05 0.73 7.95 -2.39 -0.02 0.72 16 48 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 49 H 0.08 0.65 7.92 -2.38 -0.02 0.63 16 50 H 0.07 0.79 6.20 -2.39 -0.01 0.78 16 51 H 0.13 2.94 6.73 -2.91 -0.02 2.92 16 52 H 0.11 3.39 8.06 -2.91 -0.02 3.37 16 Total: -1.00 -69.91 416.23 3.85 -66.07 By element: Atomic # 1 Polarization: 32.63 SS G_CDS: 0.20 Total: 32.83 kcal Atomic # 6 Polarization: 3.77 SS G_CDS: 8.02 Total: 11.78 kcal Atomic # 7 Polarization: -121.71 SS G_CDS: -6.35 Total: -128.06 kcal Atomic # 8 Polarization: -28.11 SS G_CDS: -0.05 Total: -28.16 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.54 kcal Total: -69.91 3.85 -66.07 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716485625.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.966 kcal (2) G-P(sol) polarization free energy of solvation -69.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.76 seconds