Wall clock time and date at job start Tue Mar 31 2020 17:45:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.46686 * 2 1 4 4 C 1.52992 * 109.47021 * 240.00037 * 2 1 3 5 5 N 1.46509 * 109.46863 * 184.99840 * 4 2 1 6 6 C 1.46493 * 119.99962 * 269.99719 * 5 4 2 7 7 C 1.36936 * 119.99994 * 90.00278 * 5 4 2 8 8 H 1.07999 * 120.00198 * 22.27286 * 7 5 4 9 9 C 1.38809 * 119.99773 * 202.28165 * 7 5 4 10 10 N 1.31622 * 120.00270 * 11.56541 * 9 7 5 11 11 Si 1.86801 * 119.99978 * 191.56585 * 9 7 5 12 12 H 1.48504 * 109.46767 * 59.99765 * 11 9 7 13 13 H 1.48496 * 109.47350 * 179.97438 * 11 9 7 14 14 H 1.48501 * 109.47134 * 300.00094 * 11 9 7 15 15 N 1.46492 * 109.46877 * 119.99713 * 2 1 3 16 16 C 1.34779 * 119.99992 * 274.72500 * 15 2 1 17 17 O 1.21548 * 120.00375 * 0.27771 * 16 15 2 18 18 C 1.47849 * 119.99773 * 180.27897 * 16 15 2 19 19 C 1.39572 * 120.14625 * 359.72534 * 18 16 15 20 20 C 1.37958 * 119.85323 * 179.74835 * 19 18 16 21 21 C 1.38357 * 120.14608 * 0.52831 * 20 19 18 22 22 C 1.50703 * 119.85758 * 179.76857 * 21 20 19 23 23 C 1.53002 * 109.46800 * 269.97682 * 22 21 20 24 24 N 1.46901 * 109.47087 * 179.97438 * 23 22 21 25 25 C 1.46901 * 111.00015 * 66.04576 * 24 23 22 26 26 C 1.46899 * 111.00210 * 190.00328 * 24 23 22 27 27 C 1.38361 * 120.28905 * 359.74289 * 21 20 19 28 28 C 1.37952 * 120.14758 * 359.97438 * 27 21 20 29 29 H 1.09000 * 109.47149 * 60.00506 * 1 2 3 30 30 H 1.08999 * 109.46686 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47419 * 300.00376 * 1 2 3 32 32 H 1.08996 * 109.47648 * 304.99780 * 4 2 1 33 33 H 1.09000 * 109.47733 * 64.99653 * 4 2 1 34 34 H 1.09001 * 109.46980 * 94.20677 * 6 5 4 35 35 H 1.09000 * 109.47103 * 214.20502 * 6 5 4 36 36 H 1.09002 * 109.47446 * 334.20729 * 6 5 4 37 37 H 0.96992 * 120.00125 * 180.02562 * 10 9 7 38 38 H 0.97001 * 120.00094 * 95.00633 * 15 2 1 39 39 H 1.07999 * 120.07493 * 359.97438 * 19 18 16 40 40 H 1.08003 * 119.92773 * 180.27586 * 20 19 18 41 41 H 1.09002 * 109.46681 * 29.97517 * 22 21 20 42 42 H 1.08997 * 109.47370 * 149.97930 * 22 21 20 43 43 H 1.09002 * 109.47178 * 299.99933 * 23 22 21 44 44 H 1.08997 * 109.46956 * 59.99995 * 23 22 21 45 45 H 1.08993 * 109.46884 * 59.99808 * 25 24 23 46 46 H 1.08998 * 109.47020 * 180.02562 * 25 24 23 47 47 H 1.09001 * 109.46862 * 300.00130 * 25 24 23 48 48 H 1.09001 * 109.47258 * 59.99415 * 26 24 23 49 49 H 1.08993 * 109.47319 * 179.97438 * 26 24 23 50 50 H 1.08998 * 109.46731 * 299.99862 * 26 24 23 51 51 H 1.08001 * 119.92608 * 179.97438 * 27 21 20 52 52 H 1.08004 * 120.07831 * 179.97438 * 28 27 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 3.5001 -0.8263 -1.1905 6 6 4.3343 0.2341 -1.7612 7 6 4.0851 -1.9158 -0.6022 8 1 3.5336 -2.8395 -0.5077 9 6 5.3868 -1.8328 -0.1273 10 7 5.9791 -0.6612 -0.0319 11 14 6.2979 -3.3837 0.3763 12 1 6.3987 -4.2990 -0.7888 13 1 7.6613 -3.0270 0.8443 14 1 5.5582 -4.0583 1.4731 15 7 2.0183 -0.6905 1.1962 16 6 2.1523 -0.0168 2.3557 17 8 1.8632 1.1626 2.4104 18 6 2.6509 -0.7122 3.5614 19 6 2.9783 -2.0678 3.5036 20 6 3.4480 -2.7095 4.6310 21 6 3.5843 -2.0149 5.8198 22 6 4.0931 -2.7236 7.0486 23 6 2.9122 -3.3118 7.8237 24 7 3.4081 -4.0031 9.0212 25 6 4.0084 -3.0528 9.9670 26 6 2.3380 -4.7790 9.6622 27 6 3.2562 -0.6724 5.8853 28 6 2.7909 -0.0174 4.7638 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.6055 -1.7197 -1.2952 33 1 1.7516 -0.1584 -2.1370 34 1 4.6019 0.9458 -0.9802 35 1 5.2406 -0.2027 -2.1808 36 1 3.7812 0.7482 -2.5473 37 1 6.8888 -0.6033 0.2996 38 1 2.2491 -1.6317 1.1526 39 1 2.8678 -2.6123 2.5775 40 1 3.7060 -3.7573 4.5864 41 1 4.7686 -3.5259 6.7518 42 1 4.6266 -2.0150 7.6821 43 1 2.2366 -2.5095 8.1205 44 1 2.3787 -4.0204 7.1903 45 1 3.2602 -2.3208 10.2707 46 1 4.3677 -3.5911 10.8441 47 1 4.8433 -2.5416 9.4877 48 1 1.9584 -5.5225 8.9614 49 1 2.7324 -5.2809 10.5457 50 1 1.5292 -4.1094 9.9550 51 1 3.3645 -0.1361 6.8164 52 1 2.5347 1.0305 4.8163 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716494794.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:45:59 Heat of formation + Delta-G solvation = -7.010451 kcal Electronic energy + Delta-G solvation = -29326.341498 eV Core-core repulsion = 25518.561436 eV Total energy + Delta-G solvation = -3807.780062 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.21735 -39.82195 -38.37687 -37.91930 -35.73018 -34.29638 -33.15700 -32.10468 -31.48280 -29.73526 -28.45669 -28.03705 -27.36521 -26.05384 -24.00063 -23.62719 -23.19073 -22.02253 -21.57550 -21.03150 -19.06582 -18.48775 -17.39028 -16.96408 -16.74187 -16.51004 -16.06729 -15.95369 -15.78316 -15.68328 -15.51889 -15.33954 -14.91936 -14.56523 -14.53383 -14.27811 -14.08059 -13.81513 -13.78445 -13.34965 -13.20644 -13.08314 -12.84730 -12.84040 -12.69563 -12.66366 -12.54609 -12.46383 -12.19419 -12.15737 -12.10289 -11.98796 -11.94531 -11.68737 -11.63982 -10.86684 -10.56898 -9.97635 -9.95174 -9.60789 -9.31465 -8.75216 -7.75756 -5.23297 -0.11861 0.41424 1.47940 1.51542 1.56579 1.92641 2.41809 2.54876 2.88129 3.03925 3.40312 3.70097 3.78719 3.82100 3.99189 4.00466 4.11153 4.17419 4.21583 4.32037 4.41672 4.43412 4.50848 4.51234 4.54252 4.62048 4.70951 4.74800 4.75821 4.82928 4.84685 4.90893 4.95847 4.99519 5.01949 5.03359 5.07775 5.16383 5.19202 5.33583 5.34363 5.39626 5.43092 5.57896 5.66470 5.74077 5.75997 5.94021 6.05742 6.09935 6.36054 6.74413 7.18772 7.37754 7.91380 8.37927 9.27804 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.012245 B = 0.003266 C = 0.002818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2286.037556 B = 8570.274337 C = 9932.970530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.118 3.882 3 H 0.039 0.961 4 C 0.142 3.858 5 N -0.612 5.612 6 C 0.180 3.820 7 C -0.250 4.250 8 H 0.081 0.919 9 C -0.043 4.043 10 N -0.935 5.935 11 Si 0.949 3.051 12 H -0.282 1.282 13 H -0.308 1.308 14 H -0.260 1.260 15 N -0.679 5.679 16 C 0.549 3.451 17 O -0.599 6.599 18 C -0.151 4.151 19 C -0.081 4.081 20 C -0.126 4.126 21 C -0.056 4.056 22 C -0.071 4.071 23 C 0.065 3.935 24 N -0.562 5.562 25 C 0.018 3.982 26 C 0.023 3.977 27 C -0.123 4.123 28 C -0.076 4.076 29 H 0.083 0.917 30 H 0.072 0.928 31 H 0.037 0.963 32 H 0.070 0.930 33 H 0.075 0.925 34 H -0.010 1.010 35 H 0.020 0.980 36 H 0.027 0.973 37 H 0.241 0.759 38 H 0.405 0.595 39 H 0.127 0.873 40 H 0.146 0.854 41 H 0.083 0.917 42 H 0.085 0.915 43 H 0.036 0.964 44 H 0.076 0.924 45 H 0.027 0.973 46 H 0.076 0.924 47 H 0.073 0.927 48 H 0.070 0.930 49 H 0.077 0.923 50 H 0.026 0.974 51 H 0.151 0.849 52 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.934 -7.438 15.557 19.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.011 3.989 3 H 0.057 0.943 4 C 0.015 3.985 5 N -0.334 5.334 6 C 0.034 3.966 7 C -0.380 4.380 8 H 0.098 0.902 9 C -0.238 4.238 10 N -0.581 5.581 11 Si 0.778 3.222 12 H -0.208 1.208 13 H -0.235 1.235 14 H -0.185 1.185 15 N -0.328 5.328 16 C 0.338 3.662 17 O -0.483 6.483 18 C -0.154 4.154 19 C -0.100 4.100 20 C -0.144 4.144 21 C -0.057 4.057 22 C -0.109 4.109 23 C -0.063 4.063 24 N -0.286 5.286 25 C -0.130 4.130 26 C -0.125 4.125 27 C -0.140 4.140 28 C -0.095 4.095 29 H 0.102 0.898 30 H 0.091 0.909 31 H 0.056 0.944 32 H 0.088 0.912 33 H 0.093 0.907 34 H 0.008 0.992 35 H 0.038 0.962 36 H 0.045 0.955 37 H 0.050 0.950 38 H 0.243 0.757 39 H 0.145 0.855 40 H 0.164 0.836 41 H 0.102 0.898 42 H 0.103 0.897 43 H 0.054 0.946 44 H 0.094 0.906 45 H 0.046 0.954 46 H 0.094 0.906 47 H 0.092 0.908 48 H 0.089 0.911 49 H 0.096 0.904 50 H 0.045 0.955 51 H 0.169 0.831 52 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -8.624 -6.946 15.426 18.989 hybrid contribution 0.546 0.083 0.203 0.588 sum -8.078 -6.864 15.629 18.884 Atomic orbital electron populations 1.22026 0.93617 1.02738 1.02068 1.21787 0.94261 0.96212 0.86648 0.94268 1.21396 0.83329 0.99434 0.94370 1.44119 1.00800 1.22052 1.66449 1.20484 0.92799 0.89979 0.93321 1.19381 0.97041 0.90223 1.31402 0.90179 1.25643 0.99741 0.98186 1.00277 1.70263 1.12971 1.23658 1.51219 0.85613 0.77660 0.80268 0.78701 1.20788 1.23509 1.18483 1.45699 1.64225 1.14289 1.08572 1.18646 0.77045 0.86073 0.84464 1.90633 1.54173 1.17259 1.86248 1.20038 1.05829 0.95286 0.94246 1.21438 0.96198 0.93035 0.99357 1.21240 1.00076 1.01160 0.91901 1.20228 0.96225 0.93739 0.95473 1.20600 0.97861 0.99862 0.92553 1.22042 0.95483 0.97097 0.91644 1.61991 1.32569 1.26636 1.07393 1.22505 0.99391 0.94976 0.96156 1.22419 0.92540 0.97586 0.99928 1.21195 0.99928 0.94486 0.98433 1.21294 0.96477 0.99993 0.91716 0.89811 0.90946 0.94365 0.91222 0.90671 0.99191 0.96167 0.95451 0.94965 0.75732 0.85516 0.83617 0.89792 0.89677 0.94577 0.90599 0.95403 0.90555 0.90844 0.91119 0.90382 0.95508 0.83093 0.85886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.26 9.49 71.98 0.68 -3.58 16 2 C 0.12 4.48 2.88 44.99 0.13 4.61 16 3 H 0.04 1.78 7.57 -2.39 -0.02 1.77 16 4 C 0.14 5.21 5.36 86.37 0.46 5.68 16 5 N -0.61 -28.86 2.82 -726.95 -2.05 -30.91 16 6 C 0.18 8.95 9.01 127.77 1.15 10.10 16 7 C -0.25 -12.46 8.02 84.03 0.67 -11.78 16 8 H 0.08 3.69 7.85 -2.91 -0.02 3.67 16 9 C -0.04 -2.29 5.12 84.86 0.43 -1.85 16 10 N -0.93 -54.90 10.59 21.65 0.23 -54.67 16 11 Si 0.95 42.79 29.57 68.60 2.03 44.82 16 12 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 13 H -0.31 -14.69 7.11 99.48 0.71 -13.98 16 14 H -0.26 -10.72 7.11 99.48 0.71 -10.01 16 15 N -0.68 -27.26 4.44 -445.43 -1.98 -29.24 16 16 C 0.55 23.88 7.74 86.79 0.67 24.55 16 17 O -0.60 -29.60 16.01 -3.87 -0.06 -29.66 16 18 C -0.15 -5.68 5.87 -20.09 -0.12 -5.80 16 19 C -0.08 -2.70 9.54 22.53 0.21 -2.48 16 20 C -0.13 -3.43 9.68 22.23 0.22 -3.22 16 21 C -0.06 -1.35 5.14 -19.81 -0.10 -1.45 16 22 C -0.07 -1.31 5.26 29.85 0.16 -1.15 16 23 C 0.07 1.10 4.94 86.30 0.43 1.53 16 24 N -0.56 -8.99 5.02 -948.86 -4.76 -13.75 16 25 C 0.02 0.23 9.32 127.69 1.19 1.42 16 26 C 0.02 0.30 9.57 127.69 1.22 1.52 16 27 C -0.12 -3.17 9.68 22.23 0.22 -2.95 16 28 C -0.08 -2.53 9.60 22.53 0.22 -2.31 16 29 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 30 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 31 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.07 2.30 8.03 -2.39 -0.02 2.28 16 33 H 0.08 2.45 7.86 -2.39 -0.02 2.43 16 34 H -0.01 -0.59 7.42 -2.39 -0.02 -0.61 16 35 H 0.02 1.07 7.19 -2.39 -0.02 1.05 16 36 H 0.03 1.16 7.84 -2.39 -0.02 1.14 16 37 H 0.24 14.18 8.31 -92.71 -0.77 13.41 16 38 H 0.41 15.57 5.43 -92.71 -0.50 15.07 16 39 H 0.13 4.14 6.41 -2.91 -0.02 4.13 16 40 H 0.15 3.31 8.06 -2.91 -0.02 3.29 16 41 H 0.08 1.58 8.08 -2.39 -0.02 1.56 16 42 H 0.08 1.39 6.49 -2.39 -0.02 1.38 16 43 H 0.04 0.62 8.12 -2.39 -0.02 0.60 16 44 H 0.08 1.31 8.06 -2.39 -0.02 1.29 16 45 H 0.03 0.35 8.14 -2.39 -0.02 0.34 16 46 H 0.08 0.86 8.12 -2.39 -0.02 0.84 16 47 H 0.07 0.95 6.47 -2.39 -0.02 0.93 16 48 H 0.07 0.88 8.12 -2.39 -0.02 0.86 16 49 H 0.08 0.84 8.12 -2.39 -0.02 0.82 16 50 H 0.03 0.33 8.14 -2.39 -0.02 0.32 16 51 H 0.15 2.95 8.06 -2.91 -0.02 2.93 16 52 H 0.12 4.21 7.65 -2.91 -0.02 4.19 16 Total: -1.00 -69.22 415.98 1.64 -67.59 By element: Atomic # 1 Polarization: 32.60 SS G_CDS: 0.38 Total: 32.99 kcal Atomic # 6 Polarization: 4.99 SS G_CDS: 7.85 Total: 12.84 kcal Atomic # 7 Polarization: -120.01 SS G_CDS: -8.56 Total: -128.57 kcal Atomic # 8 Polarization: -29.60 SS G_CDS: -0.06 Total: -29.66 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.82 kcal Total: -69.22 1.64 -67.59 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716494794.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.578 kcal (2) G-P(sol) polarization free energy of solvation -69.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds