Wall clock time and date at job start Tue Mar 31 2020 18:13:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46498 * 109.47013 * 2 1 4 4 C 1.36943 * 119.99882 * 274.26513 * 3 2 1 5 5 H 1.08000 * 119.99620 * 38.52802 * 4 3 2 6 6 C 1.38809 * 120.00038 * 218.52155 * 4 3 2 7 7 N 1.31620 * 119.99861 * 20.28658 * 6 4 3 8 8 Si 1.86801 * 119.99846 * 200.28061 * 6 4 3 9 9 H 1.48495 * 109.47240 * 0.02562 * 8 6 4 10 10 H 1.48502 * 109.46808 * 120.00503 * 8 6 4 11 11 H 1.48499 * 109.47303 * 240.00305 * 8 6 4 12 12 C 1.46499 * 120.00047 * 94.27219 * 3 2 1 13 13 C 1.53002 * 109.46970 * 269.99426 * 12 3 2 14 14 C 1.53038 * 109.46033 * 175.00065 * 13 12 3 15 15 C 1.53186 * 109.31261 * 181.37532 * 14 13 12 16 16 N 1.46926 * 108.77540 * 305.36460 * 15 14 13 17 17 C 1.34778 * 120.63216 * 233.58376 * 16 15 14 18 18 O 1.21630 * 119.99723 * 5.18328 * 17 16 15 19 19 C 1.47266 * 120.00264 * 185.17503 * 17 16 15 20 20 C 1.46678 * 126.94015 * 42.24719 * 19 17 16 21 21 C 1.34492 * 106.32993 * 180.23712 * 20 19 17 22 22 N 1.36437 * 108.85652 * 359.77668 * 21 20 19 23 23 C 1.46501 * 124.85082 * 179.97438 * 22 21 20 24 24 C 1.34656 * 110.30143 * 359.97438 * 22 21 20 25 25 C 1.50698 * 125.80687 * 179.97438 * 24 22 21 26 26 C 1.46924 * 118.73990 * 53.86283 * 16 15 14 27 27 C 1.53044 * 109.44952 * 295.06546 * 13 12 3 28 28 H 1.08997 * 109.47323 * 60.00037 * 1 2 3 29 29 H 1.08993 * 109.47390 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47117 * 300.00065 * 1 2 3 31 31 H 1.08997 * 109.46708 * 239.99666 * 2 1 3 32 32 H 1.08999 * 109.46810 * 120.00041 * 2 1 3 33 33 H 0.96996 * 119.99758 * 179.97438 * 7 6 4 34 34 H 1.08999 * 109.47097 * 150.00141 * 12 3 2 35 35 H 1.08990 * 109.47222 * 29.99417 * 12 3 2 36 36 H 1.08999 * 109.45694 * 55.02824 * 13 12 3 37 37 H 1.08998 * 109.49700 * 61.42428 * 14 13 12 38 38 H 1.09000 * 109.52505 * 301.33807 * 14 13 12 39 39 H 1.09005 * 109.58871 * 185.57435 * 15 14 13 40 40 H 1.08999 * 109.70599 * 65.21960 * 15 14 13 41 41 H 1.08005 * 126.83691 * 0.02562 * 20 19 17 42 42 H 1.08006 * 125.56536 * 179.75320 * 21 20 19 43 43 H 1.08994 * 109.47477 * 270.02352 * 23 22 21 44 44 H 1.09003 * 109.46753 * 30.03062 * 23 22 21 45 45 H 1.09006 * 109.46968 * 150.02525 * 23 22 21 46 46 H 1.09003 * 109.47091 * 90.02649 * 25 24 22 47 47 H 1.09006 * 109.47103 * 330.03314 * 25 24 22 48 48 H 1.08993 * 109.47666 * 210.02984 * 25 24 22 49 49 H 1.09002 * 109.58837 * 65.92488 * 26 16 15 50 50 H 1.08999 * 109.58747 * 186.35258 * 26 16 15 51 51 H 1.09000 * 109.49674 * 298.56802 * 27 13 12 52 52 H 1.08994 * 109.49814 * 58.66910 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1634 2.0561 -1.1827 5 1 1.4359 1.9275 -1.9705 6 6 3.2453 2.9056 -1.3689 7 7 4.3196 2.7770 -0.6194 8 14 3.1765 4.2313 -2.6831 9 1 1.8684 4.1672 -3.3829 10 1 3.3338 5.5651 -2.0495 11 1 4.2727 4.0158 -3.6615 12 6 2.3516 2.0403 1.2652 13 6 1.1114 2.7494 1.8130 14 6 1.4250 3.3319 3.1930 15 6 0.1713 4.0111 3.7530 16 7 -0.3081 4.9982 2.7761 17 6 -0.5182 6.2787 3.1403 18 8 -0.2221 6.6487 4.2605 19 6 -1.1061 7.2299 2.1820 20 6 -2.2234 6.9803 1.2651 21 6 -2.4135 8.1225 0.5808 22 7 -1.5076 9.0487 1.0086 23 6 -1.4035 10.4170 0.4956 24 6 -0.7228 8.5256 1.9697 25 6 0.3931 9.2431 2.6844 26 6 -0.5601 4.5616 1.3960 27 6 0.7071 3.8774 0.8610 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 5.0757 3.3703 -0.7497 34 1 3.1430 2.7707 1.0969 35 1 2.6916 1.2953 1.9844 36 1 0.2925 2.0350 1.8979 37 1 2.2271 4.0646 3.1049 38 1 1.7356 2.5313 3.8643 39 1 0.4148 4.5124 4.6898 40 1 -0.6036 3.2649 3.9287 41 1 -2.7803 6.0611 1.1580 42 1 -3.1608 8.2804 -0.1828 43 1 -0.7137 10.4373 -0.3480 44 1 -2.3861 10.7586 0.1700 45 1 -1.0334 11.0732 1.2834 46 1 -0.0020 9.7352 3.5732 47 1 0.8297 9.9890 2.0201 48 1 1.1586 8.5246 2.9769 49 1 -1.3924 3.8579 1.3816 50 1 -0.7992 5.4264 0.7771 51 1 1.5161 4.6050 0.7949 52 1 0.5066 3.4648 -0.1277 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717356648.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:04 Heat of formation + Delta-G solvation = 11.549493 kcal Electronic energy + Delta-G solvation = -30541.822974 eV Core-core repulsion = 26734.847731 eV Total energy + Delta-G solvation = -3806.975243 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.34907 -40.70899 -38.88224 -37.18255 -34.37324 -33.73922 -33.45291 -32.62576 -31.86648 -30.52315 -28.61998 -27.38524 -27.21475 -25.84590 -24.19374 -23.99931 -22.61985 -21.86728 -21.27851 -20.52834 -19.23610 -18.50321 -18.18159 -17.26260 -16.79940 -16.57717 -16.44673 -15.94063 -15.73210 -15.53379 -15.13225 -14.95519 -14.70186 -14.38583 -14.30673 -14.09209 -14.03852 -13.89002 -13.69550 -13.61844 -13.47192 -13.17639 -13.09232 -12.95604 -12.92574 -12.77546 -12.63998 -12.55252 -12.26062 -12.14592 -12.03262 -11.87678 -11.62118 -11.51338 -11.16487 -10.97959 -10.82784 -10.40673 -9.62657 -9.38467 -9.07772 -8.44280 -7.73303 -5.36923 0.87239 1.41763 1.46627 1.52721 1.54170 1.86540 2.17456 2.43322 2.52880 3.31072 3.72111 3.77899 3.82895 3.98501 4.00127 4.11760 4.19398 4.26535 4.27983 4.39162 4.43342 4.45598 4.52164 4.59226 4.61986 4.68422 4.70863 4.73100 4.85469 4.88169 4.90103 4.92450 4.96097 4.97460 5.05942 5.11652 5.17689 5.19556 5.27436 5.37683 5.42437 5.49130 5.56965 5.67941 5.74802 5.80406 5.82381 5.97802 6.12274 6.39351 6.54202 6.55381 7.26607 7.27070 7.97047 8.50233 9.20446 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.011240 B = 0.004133 C = 0.003547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2490.483217 B = 6772.479503 C = 7891.041177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.136 3.864 3 N -0.598 5.598 4 C -0.242 4.242 5 H 0.055 0.945 6 C -0.029 4.029 7 N -0.919 5.919 8 Si 0.935 3.065 9 H -0.261 1.261 10 H -0.296 1.296 11 H -0.295 1.295 12 C 0.157 3.843 13 C -0.088 4.088 14 C -0.118 4.118 15 C 0.118 3.882 16 N -0.602 5.602 17 C 0.586 3.414 18 O -0.594 6.594 19 C -0.263 4.263 20 C -0.185 4.185 21 C -0.005 4.005 22 N -0.444 5.444 23 C 0.060 3.940 24 C 0.076 3.924 25 C -0.083 4.083 26 C 0.114 3.886 27 C -0.102 4.102 28 H 0.038 0.962 29 H 0.061 0.939 30 H 0.050 0.950 31 H 0.028 0.972 32 H 0.040 0.960 33 H 0.246 0.754 34 H 0.054 0.946 35 H 0.020 0.980 36 H 0.069 0.931 37 H 0.037 0.963 38 H 0.084 0.916 39 H 0.077 0.923 40 H 0.084 0.916 41 H 0.154 0.846 42 H 0.204 0.796 43 H 0.082 0.918 44 H 0.112 0.888 45 H 0.094 0.906 46 H 0.084 0.916 47 H 0.090 0.910 48 H 0.056 0.944 49 H 0.081 0.919 50 H 0.094 0.906 51 H 0.019 0.981 52 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.906 11.659 3.022 19.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.010 3.990 3 N -0.319 5.319 4 C -0.372 4.372 5 H 0.072 0.928 6 C -0.226 4.226 7 N -0.564 5.564 8 Si 0.764 3.236 9 H -0.185 1.185 10 H -0.223 1.223 11 H -0.222 1.222 12 C 0.031 3.969 13 C -0.109 4.109 14 C -0.157 4.157 15 C -0.004 4.004 16 N -0.333 5.333 17 C 0.377 3.623 18 O -0.476 6.476 19 C -0.273 4.273 20 C -0.208 4.208 21 C -0.132 4.132 22 N -0.119 5.119 23 C -0.080 4.080 24 C -0.041 4.041 25 C -0.140 4.140 26 C -0.008 4.008 27 C -0.141 4.141 28 H 0.057 0.943 29 H 0.080 0.920 30 H 0.069 0.931 31 H 0.047 0.953 32 H 0.058 0.942 33 H 0.056 0.944 34 H 0.072 0.928 35 H 0.038 0.962 36 H 0.088 0.912 37 H 0.056 0.944 38 H 0.102 0.898 39 H 0.096 0.904 40 H 0.102 0.898 41 H 0.172 0.828 42 H 0.221 0.779 43 H 0.101 0.899 44 H 0.130 0.870 45 H 0.113 0.887 46 H 0.103 0.897 47 H 0.108 0.892 48 H 0.075 0.925 49 H 0.099 0.901 50 H 0.112 0.888 51 H 0.038 0.962 52 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -14.594 12.226 3.417 19.343 hybrid contribution 0.768 0.441 -0.667 1.109 sum -13.826 12.667 2.750 18.952 Atomic orbital electron populations 1.22163 0.97283 1.00570 1.00869 1.20962 0.93794 0.85886 0.98343 1.43965 1.76505 1.09366 1.02107 1.19053 1.02959 1.21112 0.94103 0.92789 1.25670 0.94277 1.03130 0.99482 1.70120 1.04194 1.38741 1.43372 0.85702 0.77944 0.80123 0.79837 1.18486 1.22325 1.22241 1.20814 0.95354 0.95409 0.85348 1.21597 0.99579 0.96549 0.93138 1.21839 0.96809 0.99652 0.97425 1.21584 0.96191 0.90777 0.91825 1.48058 1.64858 1.08575 1.11819 1.17883 0.76591 0.81637 0.86157 1.90673 1.55289 1.78439 1.23236 1.20194 1.05895 0.94731 1.06505 1.22169 0.99934 0.99805 0.98912 1.22251 0.98248 0.88709 1.04013 1.43765 1.26056 1.13015 1.29097 1.22415 1.05881 0.78513 1.01213 1.20373 0.96773 0.92793 0.94206 1.20357 0.93954 0.99868 0.99829 1.22106 0.97514 1.00140 0.81047 1.21741 0.95662 0.96490 1.00161 0.94317 0.91968 0.93107 0.95339 0.94184 0.94445 0.92761 0.96188 0.91243 0.94433 0.89752 0.90412 0.89769 0.82824 0.77898 0.89895 0.86996 0.88684 0.89749 0.89161 0.92452 0.90085 0.88795 0.96171 0.90459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.91 10.22 71.98 0.74 -4.17 16 2 C 0.14 5.47 6.44 86.38 0.56 6.03 16 3 N -0.60 -28.36 2.30 -702.02 -1.61 -29.97 16 4 C -0.24 -12.59 7.36 84.03 0.62 -11.97 16 5 H 0.05 2.82 7.91 -2.91 -0.02 2.80 16 6 C -0.03 -1.55 4.97 84.86 0.42 -1.13 16 7 N -0.92 -53.67 11.47 21.65 0.25 -53.42 16 8 Si 0.93 44.07 29.60 68.60 2.03 46.10 16 9 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 10 H -0.30 -14.22 7.11 99.48 0.71 -13.51 16 11 H -0.30 -14.04 7.11 99.48 0.71 -13.33 16 12 C 0.16 7.17 4.83 86.38 0.42 7.58 16 13 C -0.09 -3.28 2.36 -10.77 -0.03 -3.31 16 14 C -0.12 -4.01 5.36 30.67 0.16 -3.84 16 15 C 0.12 3.70 6.44 86.36 0.56 4.26 16 16 N -0.60 -20.12 2.97 -822.11 -2.44 -22.56 16 17 C 0.59 21.18 7.26 86.62 0.63 21.80 16 18 O -0.59 -24.55 15.94 -4.13 -0.07 -24.61 16 19 C -0.26 -8.17 5.24 -19.04 -0.10 -8.27 16 20 C -0.18 -4.54 8.74 23.62 0.21 -4.33 16 21 C -0.01 -0.10 11.34 83.12 0.94 0.84 16 22 N -0.44 -8.71 3.09 -533.19 -1.65 -10.35 16 23 C 0.06 0.58 10.61 127.77 1.36 1.94 16 24 C 0.08 2.02 6.89 41.78 0.29 2.31 16 25 C -0.08 -1.95 9.30 71.24 0.66 -1.28 16 26 C 0.11 3.59 5.68 86.51 0.49 4.08 16 27 C -0.10 -3.96 4.97 30.82 0.15 -3.81 16 28 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 30 H 0.05 1.60 6.40 -2.39 -0.02 1.59 16 31 H 0.03 1.20 8.07 -2.39 -0.02 1.18 16 32 H 0.04 1.53 7.84 -2.39 -0.02 1.51 16 33 H 0.25 14.10 8.31 -92.71 -0.77 13.33 16 34 H 0.05 2.95 5.54 -2.39 -0.01 2.93 16 35 H 0.02 0.88 7.86 -2.39 -0.02 0.87 16 36 H 0.07 2.42 6.40 -2.39 -0.02 2.41 16 37 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 38 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 39 H 0.08 2.56 7.00 -2.38 -0.02 2.54 16 40 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 41 H 0.15 3.34 7.65 -2.91 -0.02 3.31 16 42 H 0.20 2.17 8.06 -2.91 -0.02 2.14 16 43 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 44 H 0.11 0.52 8.13 -2.39 -0.02 0.50 16 45 H 0.09 0.73 7.49 -2.38 -0.02 0.72 16 46 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 47 H 0.09 1.55 7.58 -2.38 -0.02 1.53 16 48 H 0.06 1.67 7.73 -2.39 -0.02 1.65 16 49 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 50 H 0.09 2.89 4.84 -2.39 -0.01 2.88 16 51 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 52 H 0.08 3.28 6.26 -2.39 -0.01 3.26 16 Total: -1.00 -71.36 401.04 5.48 -65.88 By element: Atomic # 1 Polarization: 21.32 SS G_CDS: 0.89 Total: 22.21 kcal Atomic # 6 Polarization: -1.34 SS G_CDS: 8.07 Total: 6.73 kcal Atomic # 7 Polarization: -110.86 SS G_CDS: -5.45 Total: -116.31 kcal Atomic # 8 Polarization: -24.55 SS G_CDS: -0.07 Total: -24.61 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal Total: -71.36 5.48 -65.88 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717356648.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.429 kcal (2) G-P(sol) polarization free energy of solvation -71.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.880 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds