Wall clock time and date at job start Tue Mar 31 2020 18:08:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46496 * 109.46987 * 2 1 4 4 C 1.36934 * 119.99818 * 270.91204 * 3 2 1 5 5 H 1.08006 * 120.00340 * 186.50150 * 4 3 2 6 6 C 1.38810 * 120.00246 * 6.49576 * 4 3 2 7 7 N 1.31622 * 119.99558 * 20.94566 * 6 4 3 8 8 Si 1.86800 * 120.00665 * 200.94269 * 6 4 3 9 9 H 1.48505 * 109.46709 * 0.02562 * 8 6 4 10 10 H 1.48496 * 109.47064 * 120.00039 * 8 6 4 11 11 H 1.48497 * 109.47156 * 240.00491 * 8 6 4 12 12 C 1.46501 * 120.00231 * 90.91081 * 3 2 1 13 13 C 1.53004 * 109.47101 * 84.57571 * 12 3 2 14 14 C 1.53038 * 109.46127 * 66.18188 * 13 12 3 15 15 C 1.53193 * 109.30774 * 181.38669 * 14 13 12 16 16 N 1.46925 * 108.78020 * 305.36375 * 15 14 13 17 17 C 1.34772 * 120.63102 * 233.59305 * 16 15 14 18 18 O 1.21693 * 120.00252 * 359.84577 * 17 16 15 19 19 C 1.46684 * 119.99495 * 179.84953 * 17 16 15 20 20 C 1.37867 * 126.23495 * 26.74482 * 19 17 16 21 21 C 1.39836 * 107.08435 * 179.84680 * 20 19 17 22 22 C 1.35451 * 107.86595 * 0.41740 * 21 20 19 23 23 N 1.35538 * 108.87171 * 359.74216 * 22 21 20 24 24 C 1.46495 * 125.67827 * 180.02562 * 23 22 21 25 25 C 1.53003 * 109.46772 * 265.33481 * 24 23 22 26 26 C 1.46925 * 118.73438 * 53.61045 * 16 15 14 27 27 C 1.53037 * 109.45811 * 186.25520 * 13 12 3 28 28 H 1.09000 * 109.46939 * 59.66510 * 1 2 3 29 29 H 1.09004 * 109.47004 * 179.66262 * 1 2 3 30 30 H 1.08999 * 109.47278 * 299.65965 * 1 2 3 31 31 H 1.08993 * 109.47232 * 239.99607 * 2 1 3 32 32 H 1.09006 * 109.46795 * 119.99745 * 2 1 3 33 33 H 0.97001 * 120.00148 * 179.97438 * 7 6 4 34 34 H 1.08998 * 109.47166 * 324.57511 * 12 3 2 35 35 H 1.09002 * 109.46993 * 204.57216 * 12 3 2 36 36 H 1.09005 * 109.44475 * 306.21364 * 13 12 3 37 37 H 1.08996 * 109.49705 * 61.43665 * 14 13 12 38 38 H 1.08999 * 109.49753 * 301.33584 * 14 13 12 39 39 H 1.09001 * 109.58193 * 185.58007 * 15 14 13 40 40 H 1.08998 * 109.58834 * 65.15614 * 15 14 13 41 41 H 1.08001 * 126.45828 * 0.02562 * 20 19 17 42 42 H 1.08006 * 126.07067 * 180.15919 * 21 20 19 43 43 H 1.08002 * 125.56672 * 179.72138 * 22 21 20 44 44 H 1.09000 * 109.47579 * 25.33566 * 24 23 22 45 45 H 1.09000 * 109.47421 * 145.34157 * 24 23 22 46 46 H 1.08995 * 109.47007 * 64.91844 * 25 24 23 47 47 H 1.09005 * 109.47123 * 184.91662 * 25 24 23 48 48 H 1.08999 * 109.47119 * 304.91410 * 25 24 23 49 49 H 1.08995 * 109.58631 * 66.18026 * 26 16 15 50 50 H 1.09003 * 109.58542 * 186.46470 * 26 16 15 51 51 H 1.09001 * 109.50024 * 58.66019 * 27 13 12 52 52 H 1.08999 * 109.52362 * 298.57709 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2287 2.0330 -1.1858 5 1 2.6868 3.0111 -1.1905 6 6 1.8534 1.4366 -2.3817 7 7 0.9524 0.4771 -2.3843 8 14 2.6269 1.9957 -3.9875 9 1 3.6043 3.0800 -3.7149 10 1 3.3241 0.8506 -4.6261 11 1 1.5678 2.5006 -4.8977 12 6 2.2815 2.0651 1.2685 13 6 3.6886 1.7129 1.7555 14 6 4.7230 2.2945 0.7892 15 6 6.1290 1.9105 1.2610 16 7 6.2949 2.3438 2.6550 17 6 7.3373 3.1193 3.0136 18 8 8.1537 3.4649 2.1800 19 6 7.4876 3.5466 4.4087 20 6 7.0144 2.8820 5.5201 21 6 7.3825 3.6371 6.6380 22 6 8.0510 4.7304 6.1992 23 7 8.1216 4.6874 4.8463 24 6 8.7661 5.6880 3.9922 25 6 7.7214 6.6975 3.5121 26 6 5.3031 1.9154 3.6507 27 6 3.9063 2.2993 3.1522 28 1 -0.3633 0.5190 -0.8870 29 1 -0.3633 -1.0277 -0.0061 30 1 -0.3634 0.5085 0.8930 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 0.6898 0.0606 -3.2200 34 1 1.5498 1.7473 2.0113 35 1 2.2067 3.1428 1.1227 36 1 3.7980 0.6291 1.7956 37 1 4.6305 3.3803 0.7674 38 1 4.5526 1.8942 -0.2102 39 1 6.8720 2.4036 0.6342 40 1 6.2534 0.8295 1.1971 41 1 6.4657 1.9518 5.5263 42 1 7.1679 3.3941 7.6682 43 1 8.4605 5.5095 6.8251 44 1 9.5388 6.2067 4.5596 45 1 9.2170 5.1946 3.1312 46 1 7.3331 7.2525 4.3660 47 1 8.1822 7.3901 2.8077 48 1 6.9046 6.1691 3.0203 49 1 5.3601 0.8349 3.7817 50 1 5.5027 2.4098 4.6014 51 1 3.1547 1.9025 3.8347 52 1 3.8213 3.3851 3.1087 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717357380.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:08:30 Heat of formation + Delta-G solvation = 55.401448 kcal Electronic energy + Delta-G solvation = -30104.568360 eV Core-core repulsion = 26299.494681 eV Total energy + Delta-G solvation = -3805.073679 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.68747 -39.55703 -37.56581 -35.88607 -34.45652 -33.11883 -31.32526 -30.81318 -29.53546 -29.46520 -28.74165 -26.68598 -24.32137 -23.70044 -23.11901 -22.72842 -21.54844 -20.90360 -20.31963 -19.43017 -18.79542 -17.24601 -16.57318 -16.38137 -15.65246 -15.38479 -15.06678 -14.87660 -14.45812 -14.24100 -13.95032 -13.81105 -13.62317 -13.38171 -13.34461 -12.95887 -12.82147 -12.76294 -12.48509 -12.43749 -12.17046 -11.78775 -11.69167 -11.51755 -11.45666 -11.20367 -10.94816 -10.85757 -10.76138 -10.41217 -10.27680 -10.20798 -10.03206 -9.85229 -9.69797 -9.50239 -9.26465 -8.85402 -8.59439 -8.30138 -8.24102 -6.78963 -5.65327 -3.02346 1.44063 2.42767 2.61027 3.21233 3.30574 3.40857 3.50294 3.50933 4.46094 4.47541 4.53756 4.75933 4.80886 5.01771 5.03606 5.13164 5.17607 5.21639 5.26331 5.37417 5.41891 5.50879 5.53379 5.55231 5.65355 5.75315 5.81990 5.87550 5.89422 5.97456 6.04417 6.15254 6.20554 6.28491 6.44672 6.54858 6.60116 6.63448 6.66646 6.76279 6.84709 6.98134 7.03552 7.06015 7.07634 7.15966 7.32167 7.48178 7.71818 7.86474 8.19272 8.29899 8.41989 9.33404 9.94328 10.38745 11.33297 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.017407 B = 0.002985 C = 0.002708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1608.133807 B = 9377.148963 C =10336.529481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.174 3.826 3 N -0.600 5.600 4 C -0.237 4.237 5 H 0.073 0.927 6 C -0.008 4.008 7 N -0.900 5.900 8 Si 0.893 3.107 9 H -0.280 1.280 10 H -0.291 1.291 11 H -0.294 1.294 12 C 0.158 3.842 13 C -0.106 4.106 14 C -0.118 4.118 15 C 0.112 3.888 16 N -0.590 5.590 17 C 0.585 3.415 18 O -0.555 6.555 19 C -0.038 4.038 20 C -0.159 4.159 21 C -0.207 4.207 22 C 0.008 3.992 23 N -0.408 5.408 24 C 0.090 3.910 25 C -0.165 4.165 26 C 0.074 3.926 27 C -0.127 4.127 28 H 0.101 0.899 29 H 0.015 0.985 30 H 0.002 0.998 31 H 0.081 0.919 32 H 0.000 1.000 33 H 0.248 0.752 34 H 0.032 0.968 35 H 0.044 0.956 36 H 0.064 0.936 37 H 0.054 0.946 38 H 0.099 0.901 39 H 0.087 0.913 40 H 0.066 0.934 41 H 0.157 0.843 42 H 0.141 0.859 43 H 0.165 0.835 44 H 0.089 0.911 45 H 0.109 0.891 46 H 0.059 0.941 47 H 0.076 0.924 48 H 0.063 0.937 49 H 0.068 0.932 50 H 0.114 0.886 51 H 0.071 0.929 52 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.194 6.637 17.980 22.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.049 3.951 3 N -0.322 5.322 4 C -0.366 4.366 5 H 0.091 0.909 6 C -0.204 4.204 7 N -0.548 5.548 8 Si 0.724 3.276 9 H -0.206 1.206 10 H -0.218 1.218 11 H -0.222 1.222 12 C 0.031 3.969 13 C -0.128 4.128 14 C -0.156 4.156 15 C -0.009 4.009 16 N -0.321 5.321 17 C 0.374 3.626 18 O -0.436 6.436 19 C -0.152 4.152 20 C -0.184 4.184 21 C -0.231 4.231 22 C -0.127 4.127 23 N -0.081 5.081 24 C -0.031 4.031 25 C -0.222 4.222 26 C -0.048 4.048 27 C -0.166 4.166 28 H 0.119 0.881 29 H 0.034 0.966 30 H 0.021 0.979 31 H 0.099 0.901 32 H 0.018 0.982 33 H 0.059 0.941 34 H 0.050 0.950 35 H 0.063 0.937 36 H 0.083 0.917 37 H 0.073 0.927 38 H 0.118 0.882 39 H 0.105 0.895 40 H 0.084 0.916 41 H 0.174 0.826 42 H 0.159 0.841 43 H 0.183 0.817 44 H 0.108 0.892 45 H 0.127 0.873 46 H 0.078 0.922 47 H 0.095 0.905 48 H 0.082 0.918 49 H 0.086 0.914 50 H 0.131 0.869 51 H 0.089 0.911 52 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 12.719 6.995 17.100 22.431 hybrid contribution 0.208 0.214 -0.758 0.815 sum 12.927 7.209 16.342 22.049 Atomic orbital electron populations 1.22515 0.99227 0.98012 1.01139 1.20709 0.92570 0.84406 0.97396 1.44179 1.76350 1.11007 1.00630 1.19318 1.32490 1.01101 0.83670 0.90893 1.24717 0.98713 0.99527 0.97453 1.70187 1.30510 1.29400 1.24681 0.86337 0.79081 0.77718 0.84477 1.20562 1.21773 1.22160 1.20711 0.91956 0.95975 0.88305 1.21822 0.98624 0.99754 0.92557 1.21901 0.91676 1.00575 1.01478 1.21806 0.99282 0.99440 0.80416 1.47842 1.24055 1.49793 1.10423 1.17042 0.81377 0.78463 0.85765 1.90757 1.42709 1.57676 1.52425 1.20110 1.08172 0.92758 0.94166 1.21663 1.03915 1.01756 0.91077 1.20837 1.06385 0.96927 0.98994 1.21977 1.06069 1.01914 0.82703 1.44066 1.40713 1.17135 1.06222 1.22103 0.95697 0.89493 0.95798 1.22100 0.99538 0.98800 1.01811 1.22729 0.88514 1.00282 0.93306 1.21936 0.95290 1.01258 0.98104 0.88058 0.96641 0.97855 0.90087 0.98184 0.94097 0.94976 0.93743 0.91744 0.92724 0.88219 0.89495 0.91577 0.82556 0.84085 0.81729 0.89240 0.87307 0.92157 0.90548 0.91776 0.91402 0.86891 0.91072 0.92010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.51 9.60 37.16 0.36 -3.16 16 2 C 0.17 4.12 5.67 -4.04 -0.02 4.10 16 3 N -0.60 -14.12 2.34 -173.24 -0.40 -14.53 16 4 C -0.24 -6.12 8.08 -15.06 -0.12 -6.24 16 5 H 0.07 1.88 7.91 -52.48 -0.42 1.46 16 6 C -0.01 -0.22 5.04 -17.43 -0.09 -0.31 16 7 N -0.90 -24.74 7.84 55.49 0.43 -24.30 16 8 Si 0.89 21.40 29.60 -169.99 -5.03 16.37 16 9 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 10 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 11 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 12 C 0.16 3.07 5.11 -4.04 -0.02 3.05 16 13 C -0.11 -1.73 2.34 -90.58 -0.21 -1.94 16 14 C -0.12 -2.02 5.05 -26.61 -0.13 -2.15 16 15 C 0.11 1.73 6.43 -3.71 -0.02 1.71 16 16 N -0.59 -8.39 2.97 -174.31 -0.52 -8.91 16 17 C 0.58 8.89 7.54 -12.85 -0.10 8.79 16 18 O -0.56 -9.86 14.51 5.20 0.08 -9.78 16 19 C -0.04 -0.49 6.52 -81.98 -0.53 -1.03 16 20 C -0.16 -1.72 8.56 -39.12 -0.33 -2.05 16 21 C -0.21 -1.94 10.81 -39.98 -0.43 -2.38 16 22 C 0.01 0.07 11.37 -16.91 -0.19 -0.12 16 23 N -0.41 -4.54 2.76 -112.87 -0.31 -4.85 16 24 C 0.09 0.86 6.47 -4.04 -0.03 0.83 16 25 C -0.16 -1.49 10.24 37.16 0.38 -1.11 16 26 C 0.07 0.87 5.41 -3.71 -0.02 0.85 16 27 C -0.13 -1.65 5.36 -26.61 -0.14 -1.80 16 28 H 0.10 2.70 5.85 -51.93 -0.30 2.40 16 29 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.00 0.05 8.14 -51.93 -0.42 -0.37 16 31 H 0.08 2.14 6.07 -51.93 -0.32 1.83 16 32 H 0.00 0.00 8.06 -51.93 -0.42 -0.42 16 33 H 0.25 6.72 8.31 -40.82 -0.34 6.38 16 34 H 0.03 0.60 8.11 -51.93 -0.42 0.18 16 35 H 0.04 0.88 7.99 -51.93 -0.42 0.47 16 36 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 37 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.10 1.99 6.58 -51.93 -0.34 1.65 16 39 H 0.09 1.43 7.00 -51.93 -0.36 1.07 16 40 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 41 H 0.16 1.44 5.79 -52.49 -0.30 1.13 16 42 H 0.14 1.00 8.06 -52.48 -0.42 0.57 16 43 H 0.17 0.95 8.06 -52.49 -0.42 0.53 16 44 H 0.09 0.59 8.12 -51.93 -0.42 0.17 16 45 H 0.11 1.27 6.41 -51.93 -0.33 0.94 16 46 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 47 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 48 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 49 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 50 H 0.11 1.18 3.34 -51.93 -0.17 1.01 16 51 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 52 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 396.17 15.07 5.97 5.97 Total: -1.00 -30.01 396.17 -10.31 -40.31 By element: Atomic # 1 Polarization: 11.52 SS G_CDS: -8.86 Total: 2.66 kcal Atomic # 6 Polarization: -1.29 SS G_CDS: -1.67 Total: -2.95 kcal Atomic # 7 Polarization: -51.79 SS G_CDS: -0.80 Total: -52.59 kcal Atomic # 8 Polarization: -9.86 SS G_CDS: 0.08 Total: -9.78 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.03 Total: 16.37 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -30.01 -10.31 -40.31 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717357380.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.716 kcal (2) G-P(sol) polarization free energy of solvation -30.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.314 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds