Wall clock time and date at job start Tue Mar 31 2020 17:35:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.46899 * 2 1 4 4 N 1.46492 * 109.46994 * 119.99772 * 2 1 3 5 5 C 1.36935 * 120.00493 * 275.00078 * 4 2 1 6 6 H 1.08002 * 119.99866 * 0.02562 * 5 4 2 7 7 C 1.38810 * 120.00463 * 179.97438 * 5 4 2 8 8 N 1.31625 * 119.99891 * 180.02562 * 7 5 4 9 9 Si 1.86800 * 120.00053 * 359.97438 * 7 5 4 10 10 H 1.48497 * 109.46850 * 89.99839 * 9 7 5 11 11 H 1.48502 * 109.47154 * 210.00096 * 9 7 5 12 12 H 1.48501 * 109.46793 * 330.00187 * 9 7 5 13 13 C 1.53001 * 109.46828 * 239.99984 * 2 1 3 14 14 H 1.09001 * 109.47009 * 299.99338 * 13 2 1 15 15 C 1.53008 * 109.46508 * 180.02562 * 13 2 1 16 16 N 1.46497 * 109.47201 * 60.00251 * 13 2 1 17 17 C 1.34777 * 119.99525 * 204.99403 * 16 13 2 18 18 O 1.21283 * 120.00463 * 0.02562 * 17 16 13 19 19 C 1.50700 * 119.99675 * 179.72583 * 17 16 13 20 20 C 1.53004 * 109.47208 * 180.27843 * 19 17 16 21 21 C 1.50700 * 109.47208 * 180.02562 * 20 19 17 22 22 C 1.38288 * 119.91993 * 269.72490 * 21 20 19 23 23 C 1.38114 * 120.06949 * 179.72580 * 22 21 20 24 24 C 1.38916 * 119.92214 * 0.54623 * 23 22 21 25 25 N 1.39670 * 120.06949 * 179.70214 * 24 23 22 26 26 C 1.46505 * 119.99645 * 180.02562 * 25 24 23 27 27 C 1.46497 * 120.00484 * 0.02768 * 25 24 23 28 28 C 1.38910 * 119.85133 * 359.72838 * 24 23 22 29 29 C 1.38102 * 119.92530 * 359.97438 * 28 24 23 30 30 H 1.08998 * 109.47131 * 300.00105 * 1 2 3 31 31 H 1.09003 * 109.46937 * 60.00044 * 1 2 3 32 32 H 1.08994 * 109.47191 * 180.02562 * 1 2 3 33 33 H 0.97000 * 120.00244 * 94.99599 * 4 2 1 34 34 H 0.97004 * 119.99707 * 179.97438 * 8 7 5 35 35 H 1.08998 * 109.46811 * 179.97438 * 15 13 2 36 36 H 1.08994 * 109.47201 * 299.99808 * 15 13 2 37 37 H 1.08995 * 109.47273 * 60.00263 * 15 13 2 38 38 H 0.97000 * 120.00580 * 25.00149 * 16 13 2 39 39 H 1.09009 * 109.47352 * 300.27556 * 19 17 16 40 40 H 1.08998 * 109.47585 * 60.27844 * 19 17 16 41 41 H 1.09000 * 109.46887 * 300.00372 * 20 19 17 42 42 H 1.08998 * 109.46846 * 59.99549 * 20 19 17 43 43 H 1.07992 * 119.96728 * 359.97438 * 22 21 20 44 44 H 1.07995 * 120.03765 * 180.27352 * 23 22 21 45 45 H 1.08996 * 109.47166 * 89.99823 * 26 25 24 46 46 H 1.09005 * 109.46786 * 210.00125 * 26 25 24 47 47 H 1.09006 * 109.46946 * 329.99803 * 26 25 24 48 48 H 1.08998 * 109.47272 * 59.99393 * 27 25 24 49 49 H 1.09001 * 109.47381 * 179.97438 * 27 25 24 50 50 H 1.09000 * 109.46671 * 299.99865 * 27 25 24 51 51 H 1.08002 * 120.03672 * 180.02562 * 28 24 23 52 52 H 1.08005 * 119.96012 * 179.97438 * 29 28 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6905 1.1961 5 6 2.1491 -0.0075 2.3757 6 1 1.8919 1.0403 2.4243 7 6 2.6113 -0.6619 3.5093 8 7 2.7365 -0.0054 4.6432 9 14 3.0542 -2.4747 3.4258 10 1 4.4868 -2.6180 3.0620 11 1 2.8141 -3.1044 4.7491 12 1 2.2138 -3.1428 2.3999 13 6 2.0400 -0.7213 -1.2493 14 1 1.6767 -1.7490 -1.2492 15 6 3.5701 -0.7218 -1.2489 16 7 1.5517 -0.0306 -2.4454 17 6 1.4231 -0.7031 -3.6064 18 8 1.7111 -1.8799 -3.6607 19 6 0.9149 0.0058 -4.8353 20 6 0.8582 -0.9787 -6.0052 21 6 0.3506 -0.2696 -7.2343 22 6 -1.0057 -0.2389 -7.5022 23 6 -1.4748 0.4149 -8.6247 24 6 -0.5814 1.0322 -9.4910 25 7 -1.0519 1.6889 -10.6304 26 6 -0.1082 2.3390 -11.5432 27 6 -2.4889 1.7277 -10.9127 28 6 0.7808 0.9945 -9.2218 29 6 1.2425 0.3443 -8.0943 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 2.2490 -1.6317 1.1527 34 1 3.0591 -0.4628 5.4354 35 1 3.9334 -1.2360 -2.1386 36 1 3.9337 0.3057 -1.2487 37 1 3.9330 -1.2359 -0.3589 38 1 1.3210 0.9105 -2.4019 39 1 -0.0836 0.3980 -4.6418 40 1 1.5861 0.8277 -5.0844 41 1 1.8566 -1.3709 -6.1986 42 1 0.1870 -1.8006 -5.7561 43 1 -1.6993 -0.7232 -6.8308 44 1 -2.5345 0.4423 -8.8311 45 1 0.2078 1.6277 -12.3063 46 1 -0.5923 3.1917 -12.0194 47 1 0.7619 2.6813 -10.9830 48 1 -3.0074 2.2217 -10.0911 49 1 -2.6630 2.2799 -11.8362 50 1 -2.8654 0.7105 -11.0207 51 1 1.4780 1.4739 -9.8931 52 1 2.3016 0.3143 -7.8846 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717421436.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:35:57 Heat of formation + Delta-G solvation = -1.036998 kcal Electronic energy + Delta-G solvation = -27729.020444 eV Core-core repulsion = 23921.499410 eV Total energy + Delta-G solvation = -3807.521034 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.10986 -39.60503 -37.17762 -36.68834 -33.98946 -33.43609 -31.79379 -31.39883 -30.15019 -28.99056 -28.87254 -28.56978 -25.77094 -23.91307 -23.51592 -22.60638 -22.19362 -20.55098 -20.25171 -19.85335 -17.86643 -17.71093 -16.91821 -16.30602 -15.77542 -15.49084 -15.36796 -15.24243 -14.52907 -14.43526 -14.25519 -13.95962 -13.80080 -13.71072 -13.52646 -13.11347 -12.97625 -12.89613 -12.88718 -12.60518 -12.48488 -12.38986 -12.10862 -12.07314 -11.79415 -11.40687 -11.35148 -11.29265 -11.07163 -10.89917 -10.87415 -10.75689 -10.28410 -10.01907 -9.93792 -9.65678 -9.55659 -9.13389 -9.02865 -8.78096 -7.54578 -7.29659 -5.78135 -3.14257 1.22941 1.33899 2.73938 2.80126 3.31603 3.39246 3.43030 3.47085 3.66173 4.50303 4.53936 4.59058 4.65534 4.74629 4.77528 4.87184 4.95703 5.01466 5.10439 5.13042 5.19759 5.21502 5.24172 5.31031 5.34832 5.39998 5.45045 5.47264 5.57011 5.66538 5.74150 5.74881 5.83343 6.02788 6.05150 6.06068 6.13568 6.21275 6.28390 6.31371 6.41527 6.56062 6.57336 6.62387 6.69982 6.85528 6.87452 6.95263 7.15913 7.69612 7.96492 8.39468 8.41280 9.18208 9.90885 10.10008 11.39895 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.031256 B = 0.001705 C = 0.001682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.600082 B =16423.120281 C =16644.697501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.173 3.827 3 H 0.059 0.941 4 N -0.742 5.742 5 C -0.242 4.242 6 H 0.091 0.909 7 C 0.007 3.993 8 N -0.933 5.933 9 Si 0.881 3.119 10 H -0.283 1.283 11 H -0.291 1.291 12 H -0.276 1.276 13 C 0.132 3.868 14 H 0.083 0.917 15 C -0.154 4.154 16 N -0.719 5.719 17 C 0.510 3.490 18 O -0.545 6.545 19 C -0.134 4.134 20 C -0.057 4.057 21 C -0.137 4.137 22 C -0.068 4.068 23 C -0.193 4.193 24 C 0.206 3.794 25 N -0.642 5.642 26 C 0.094 3.906 27 C 0.097 3.903 28 C -0.195 4.195 29 C -0.068 4.068 30 H 0.059 0.941 31 H 0.039 0.961 32 H 0.045 0.955 33 H 0.362 0.638 34 H 0.259 0.741 35 H 0.049 0.951 36 H 0.055 0.945 37 H 0.072 0.928 38 H 0.399 0.601 39 H 0.092 0.908 40 H 0.091 0.909 41 H 0.075 0.925 42 H 0.076 0.924 43 H 0.121 0.879 44 H 0.119 0.881 45 H 0.046 0.954 46 H 0.065 0.935 47 H 0.068 0.932 48 H 0.053 0.947 49 H 0.071 0.929 50 H 0.053 0.947 51 H 0.120 0.880 52 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.051 5.191 -34.149 35.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.063 3.937 3 H 0.077 0.923 4 N -0.386 5.386 5 C -0.372 4.372 6 H 0.108 0.892 7 C -0.189 4.189 8 N -0.581 5.581 9 Si 0.711 3.289 10 H -0.210 1.210 11 H -0.217 1.217 12 H -0.202 1.202 13 C 0.027 3.973 14 H 0.101 0.899 15 C -0.212 4.212 16 N -0.370 5.370 17 C 0.297 3.703 18 O -0.423 6.423 19 C -0.174 4.174 20 C -0.094 4.094 21 C -0.139 4.139 22 C -0.086 4.086 23 C -0.215 4.215 24 C 0.106 3.894 25 N -0.354 5.354 26 C -0.049 4.049 27 C -0.046 4.046 28 C -0.217 4.217 29 C -0.086 4.086 30 H 0.078 0.922 31 H 0.058 0.942 32 H 0.064 0.936 33 H 0.195 0.805 34 H 0.070 0.930 35 H 0.068 0.932 36 H 0.074 0.926 37 H 0.091 0.909 38 H 0.233 0.767 39 H 0.110 0.890 40 H 0.110 0.890 41 H 0.094 0.906 42 H 0.094 0.906 43 H 0.139 0.861 44 H 0.137 0.863 45 H 0.065 0.935 46 H 0.083 0.917 47 H 0.087 0.913 48 H 0.072 0.928 49 H 0.090 0.910 50 H 0.071 0.929 51 H 0.138 0.862 52 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -7.898 4.616 -34.144 35.349 hybrid contribution 0.126 -0.720 0.111 0.740 sum -7.772 3.895 -34.033 35.126 Atomic orbital electron populations 1.22410 0.98576 1.01093 1.00343 1.20363 0.92267 0.95858 0.85191 0.92295 1.42655 1.79864 1.09352 1.06724 1.19020 1.37147 0.95515 0.85536 0.89154 1.24643 1.01313 0.97443 0.95520 1.69700 1.52526 1.35589 1.00244 0.86599 0.78567 0.86787 0.76908 1.20994 1.21730 1.20211 1.21320 0.94354 0.97559 0.84078 0.89928 1.22058 0.95095 1.02070 1.01969 1.46079 1.67109 1.14005 1.09788 1.20694 0.77616 0.87422 0.84617 1.90695 1.50369 1.16142 1.85075 1.21682 1.03123 0.99719 0.92922 1.20199 1.02584 0.96522 0.90125 1.19684 0.93376 1.02795 0.97997 1.20830 0.94944 0.96943 0.95901 1.20620 0.98771 1.04927 0.97186 1.17818 0.92785 0.92143 0.86674 1.46300 1.05858 1.59273 1.24001 1.21648 0.93594 0.96705 0.93001 1.21576 0.80584 1.01471 1.00988 1.20656 0.93390 1.06957 1.00742 1.20816 0.99276 0.95409 0.93139 0.92222 0.94211 0.93567 0.80482 0.93046 0.93230 0.92635 0.90903 0.76738 0.88977 0.89023 0.90586 0.90555 0.86094 0.86333 0.93538 0.91668 0.91296 0.92833 0.91029 0.92867 0.86211 0.86118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.79 9.33 37.16 0.35 -2.45 16 2 C 0.17 3.17 2.52 -67.93 -0.17 3.00 16 3 H 0.06 1.08 8.08 -51.93 -0.42 0.66 16 4 N -0.74 -17.06 4.23 -53.43 -0.23 -17.29 16 5 C -0.24 -6.66 10.41 -15.06 -0.16 -6.81 16 6 H 0.09 2.65 8.06 -52.49 -0.42 2.22 16 7 C 0.01 0.20 5.50 -17.43 -0.10 0.10 16 8 N -0.93 -29.00 13.97 55.49 0.78 -28.22 16 9 Si 0.88 22.11 27.73 -169.99 -4.71 17.39 16 10 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 11 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 12 H -0.28 -6.60 6.52 56.52 0.37 -6.23 16 13 C 0.13 2.14 2.21 -67.93 -0.15 1.99 16 14 H 0.08 1.51 7.58 -51.93 -0.39 1.11 16 15 C -0.15 -2.52 9.33 37.16 0.35 -2.17 16 16 N -0.72 -9.23 4.38 -53.80 -0.24 -9.46 16 17 C 0.51 6.76 7.79 -10.98 -0.09 6.67 16 18 O -0.55 -9.41 15.64 5.55 0.09 -9.32 16 19 C -0.13 -1.26 5.68 -27.88 -0.16 -1.42 16 20 C -0.06 -0.56 4.63 -27.88 -0.13 -0.69 16 21 C -0.14 -1.27 5.14 -104.59 -0.54 -1.81 16 22 C -0.07 -0.60 9.69 -39.61 -0.38 -0.99 16 23 C -0.19 -1.67 9.31 -39.38 -0.37 -2.04 16 24 C 0.21 1.80 6.55 -83.79 -0.55 1.25 16 25 N -0.64 -4.45 3.41 -187.54 -0.64 -5.09 16 26 C 0.09 0.45 10.16 59.85 0.61 1.05 16 27 C 0.10 0.47 9.40 59.85 0.56 1.03 16 28 C -0.20 -1.67 9.21 -39.38 -0.36 -2.03 16 29 C -0.07 -0.60 9.69 -39.62 -0.38 -0.98 16 30 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.04 0.55 7.45 -51.93 -0.39 0.16 16 32 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.36 8.38 5.44 -40.82 -0.22 8.15 16 34 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 35 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.07 1.32 7.44 -51.93 -0.39 0.93 16 38 H 0.40 4.08 8.39 -40.82 -0.34 3.74 16 39 H 0.09 0.75 8.14 -51.92 -0.42 0.32 16 40 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.08 0.81 8.04 -51.93 -0.42 0.40 16 42 H 0.08 0.83 8.04 -51.93 -0.42 0.41 16 43 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 44 H 0.12 0.85 6.73 -52.49 -0.35 0.50 16 45 H 0.05 0.21 8.14 -51.93 -0.42 -0.22 16 46 H 0.06 0.21 7.92 -51.93 -0.41 -0.20 16 47 H 0.07 0.31 6.20 -51.93 -0.32 -0.01 16 48 H 0.05 0.25 7.95 -51.93 -0.41 -0.16 16 49 H 0.07 0.22 7.79 -51.93 -0.40 -0.19 16 50 H 0.05 0.25 7.95 -51.93 -0.41 -0.16 16 51 H 0.12 0.83 6.14 -52.49 -0.32 0.51 16 52 H 0.12 0.91 8.06 -52.48 -0.42 0.49 16 LS Contribution 417.28 15.07 6.29 6.29 Total: -1.00 -33.80 417.28 -9.35 -43.15 By element: Atomic # 1 Polarization: 17.87 SS G_CDS: -9.02 Total: 8.85 kcal Atomic # 6 Polarization: -4.63 SS G_CDS: -1.67 Total: -6.29 kcal Atomic # 7 Polarization: -59.74 SS G_CDS: -0.33 Total: -60.06 kcal Atomic # 8 Polarization: -9.41 SS G_CDS: 0.09 Total: -9.32 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -4.71 Total: 17.39 kcal Total LS contribution 6.29 Total: 6.29 kcal Total: -33.80 -9.35 -43.15 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717421436.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.114 kcal (2) G-P(sol) polarization free energy of solvation -33.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds