Wall clock time and date at job start Tue Mar 31 2020 17:36:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09007 * 109.46517 * 2 1 4 4 N 1.46497 * 109.47555 * 119.99890 * 2 1 3 5 5 C 1.34771 * 120.00151 * 275.00524 * 4 2 1 6 6 O 1.21288 * 120.00185 * 359.97438 * 5 4 2 7 7 C 1.50705 * 120.00052 * 180.02562 * 5 4 2 8 8 C 1.52994 * 109.46996 * 179.97438 * 7 5 4 9 9 C 1.50701 * 109.47175 * 179.97438 * 8 7 5 10 10 C 1.38295 * 119.92455 * 269.72894 * 9 8 7 11 11 C 1.38099 * 120.07077 * 179.72114 * 10 9 8 12 12 C 1.38913 * 119.92817 * 0.54966 * 11 10 9 13 13 N 1.39672 * 120.07476 * 179.70484 * 12 11 10 14 14 C 1.46500 * 119.99895 * 174.30805 * 13 12 11 15 15 C 1.46498 * 120.00134 * 354.30512 * 13 12 11 16 16 C 1.38914 * 119.84993 * 359.72183 * 12 11 10 17 17 C 1.38106 * 119.92356 * 0.02562 * 16 12 11 18 18 C 1.53003 * 109.46731 * 240.00466 * 2 1 3 19 19 H 1.08997 * 109.47325 * 299.99146 * 18 2 1 20 20 C 1.53009 * 109.46619 * 179.97438 * 18 2 1 21 21 N 1.46501 * 109.47432 * 59.99766 * 18 2 1 22 22 C 1.36932 * 119.99730 * 204.99722 * 21 18 2 23 23 H 1.08005 * 120.00421 * 0.02562 * 22 21 18 24 24 C 1.38813 * 119.99872 * 179.97438 * 22 21 18 25 25 N 1.31620 * 119.99834 * 0.02562 * 24 22 21 26 26 Si 1.86803 * 119.99914 * 180.02562 * 24 22 21 27 27 H 1.48496 * 109.47273 * 60.00194 * 26 24 22 28 28 H 1.48506 * 109.46875 * 180.02562 * 26 24 22 29 29 H 1.48499 * 109.47103 * 299.99811 * 26 24 22 30 30 H 1.08998 * 109.47465 * 59.99994 * 1 2 3 31 31 H 1.09007 * 109.46517 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46914 * 299.99738 * 1 2 3 33 33 H 0.97000 * 119.99602 * 94.99833 * 4 2 1 34 34 H 1.09001 * 109.47269 * 59.98967 * 7 5 4 35 35 H 1.09004 * 109.46431 * 299.99254 * 7 5 4 36 36 H 1.09001 * 109.47397 * 60.00057 * 8 7 5 37 37 H 1.09000 * 109.47470 * 299.99592 * 8 7 5 38 38 H 1.08001 * 119.95918 * 359.97438 * 10 9 8 39 39 H 1.08003 * 120.03641 * 180.26962 * 11 10 9 40 40 H 1.08998 * 109.47278 * 5.04681 * 14 13 12 41 41 H 1.08995 * 109.47754 * 125.05473 * 14 13 12 42 42 H 1.09010 * 109.46805 * 245.05740 * 14 13 12 43 43 H 1.09001 * 109.47244 * 90.00198 * 15 13 12 44 44 H 1.09008 * 109.46915 * 210.00423 * 15 13 12 45 45 H 1.08997 * 109.47114 * 329.99801 * 15 13 12 46 46 H 1.07995 * 120.03464 * 180.02562 * 16 12 11 47 47 H 1.08001 * 119.95982 * 179.97438 * 17 16 12 48 48 H 1.08998 * 109.47230 * 59.99753 * 20 18 2 49 49 H 1.09000 * 109.46802 * 179.97438 * 20 18 2 50 50 H 1.08995 * 109.46772 * 299.99244 * 20 18 2 51 51 H 0.96992 * 119.99809 * 24.99596 * 21 18 2 52 52 H 0.97006 * 119.99715 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 7 2.0185 -0.6905 1.1961 5 6 2.1472 -0.0183 2.3571 6 8 1.8590 1.1586 2.4115 7 6 2.6502 -0.7285 3.5874 8 6 2.7020 0.2547 4.7584 9 6 3.2044 -0.4557 5.9889 10 6 2.3082 -1.0653 6.8478 11 6 2.7657 -1.7220 7.9732 12 6 4.1269 -1.7601 8.2481 13 7 4.5924 -2.4182 9.3888 14 6 6.0327 -2.5656 9.6128 15 6 3.6406 -2.9609 10.3611 16 6 5.0239 -1.1419 7.3862 17 6 4.5600 -0.4913 6.2597 18 6 2.0400 -0.7212 -1.2494 19 1 1.6768 -1.7489 -1.2494 20 6 3.5701 -0.7206 -1.2496 21 7 1.5516 -0.0305 -2.4455 22 6 1.4208 -0.7137 -3.6250 23 1 1.6773 -1.7617 -3.6735 24 6 0.9576 -0.0594 -4.7583 25 7 0.6445 1.2176 -4.6991 26 14 0.7785 -0.9915 -6.3672 27 1 -0.1766 -2.1139 -6.1854 28 1 0.2696 -0.0730 -7.4173 29 1 2.1007 -1.5282 -6.7782 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3632 -1.0278 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 2.2492 -1.6317 1.1525 34 1 3.6495 -1.1204 3.3977 35 1 1.9779 -1.5508 3.8324 36 1 1.7029 0.6468 4.9483 37 1 3.3744 1.0768 4.5132 38 1 1.2497 -1.0311 6.6360 39 1 2.0657 -2.2016 8.6414 40 1 6.5779 -2.0262 8.8383 41 1 6.2920 -2.1587 10.5901 42 1 6.2998 -3.6218 9.5764 43 1 3.3924 -3.9878 10.0925 44 1 4.0870 -2.9432 11.3554 45 1 2.7341 -2.3556 10.3591 46 1 6.0827 -1.1700 7.5968 47 1 5.2569 -0.0102 5.5894 48 1 3.9338 -1.2342 -0.3597 49 1 3.9334 -1.2348 -2.1394 50 1 3.9329 0.3072 -1.2499 51 1 1.3209 0.9105 -2.4019 52 1 0.3204 1.6747 -5.4910 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717421437.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:36:02 Heat of formation + Delta-G solvation = -1.265103 kcal Electronic energy + Delta-G solvation = -27655.037125 eV Core-core repulsion = 23847.506199 eV Total energy + Delta-G solvation = -3807.530925 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.08325 -39.52979 -37.08870 -36.56572 -33.86582 -33.38170 -31.71520 -31.42459 -29.95197 -28.89299 -28.55648 -28.34262 -25.72169 -23.97394 -23.54997 -22.59505 -22.28947 -20.52105 -20.10829 -19.75355 -17.76038 -17.40615 -16.87801 -16.28823 -15.57907 -15.47682 -15.30694 -15.22590 -14.64932 -14.34110 -14.19101 -13.87948 -13.77206 -13.58065 -13.39211 -13.09768 -13.01137 -12.94271 -12.76341 -12.44209 -12.38826 -12.34649 -12.03859 -11.80389 -11.64551 -11.35785 -11.26248 -11.13146 -10.92154 -10.81752 -10.81119 -10.64782 -10.22991 -10.00554 -9.86425 -9.74510 -9.48157 -9.11895 -8.98027 -8.68085 -7.51388 -6.97449 -5.76268 -3.05769 1.24596 1.35727 2.76133 2.88925 3.39808 3.44145 3.49170 3.49858 3.68777 4.46365 4.55018 4.59642 4.71700 4.77781 4.86854 4.90010 5.00391 5.05904 5.12517 5.16166 5.20752 5.27927 5.30010 5.38426 5.39441 5.50110 5.51648 5.60679 5.71958 5.76850 5.80803 5.86268 5.94153 6.07057 6.11182 6.13898 6.24122 6.28599 6.43186 6.46544 6.57249 6.60041 6.64155 6.67924 6.84641 6.88953 7.00691 7.06421 7.18388 7.68882 7.79409 8.41105 8.50063 9.52650 10.08562 10.43683 11.46020 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.030775 B = 0.001637 C = 0.001614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.607269 B =17098.294883 C =17345.914597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.135 3.865 3 H 0.084 0.916 4 N -0.719 5.719 5 C 0.509 3.491 6 O -0.545 6.545 7 C -0.134 4.134 8 C -0.057 4.057 9 C -0.136 4.136 10 C -0.067 4.067 11 C -0.195 4.195 12 C 0.207 3.793 13 N -0.642 5.642 14 C 0.090 3.910 15 C 0.095 3.905 16 C -0.198 4.198 17 C -0.067 4.067 18 C 0.168 3.832 19 H 0.050 0.950 20 C -0.164 4.164 21 N -0.718 5.718 22 C -0.240 4.240 23 H 0.070 0.930 24 C -0.012 4.012 25 N -0.931 5.931 26 Si 0.907 3.093 27 H -0.286 1.286 28 H -0.291 1.291 29 H -0.287 1.287 30 H 0.079 0.921 31 H 0.049 0.951 32 H 0.046 0.954 33 H 0.397 0.603 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.121 0.879 39 H 0.120 0.880 40 H 0.078 0.922 41 H 0.054 0.946 42 H 0.050 0.950 43 H 0.046 0.954 44 H 0.064 0.936 45 H 0.068 0.932 46 H 0.122 0.878 47 H 0.121 0.879 48 H 0.035 0.965 49 H 0.054 0.946 50 H 0.046 0.954 51 H 0.385 0.615 52 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.313 -9.005 31.109 33.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.030 3.970 3 H 0.102 0.898 4 N -0.370 5.370 5 C 0.295 3.705 6 O -0.422 6.422 7 C -0.174 4.174 8 C -0.095 4.095 9 C -0.138 4.138 10 C -0.086 4.086 11 C -0.217 4.217 12 C 0.106 3.894 13 N -0.355 5.355 14 C -0.053 4.053 15 C -0.048 4.048 16 C -0.220 4.220 17 C -0.085 4.085 18 C 0.058 3.942 19 H 0.067 0.933 20 C -0.224 4.224 21 N -0.360 5.360 22 C -0.371 4.371 23 H 0.088 0.912 24 C -0.208 4.208 25 N -0.579 5.579 26 Si 0.738 3.262 27 H -0.213 1.213 28 H -0.217 1.217 29 H -0.213 1.213 30 H 0.098 0.902 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.230 0.770 34 H 0.109 0.891 35 H 0.109 0.891 36 H 0.094 0.906 37 H 0.095 0.905 38 H 0.139 0.861 39 H 0.137 0.863 40 H 0.097 0.903 41 H 0.072 0.928 42 H 0.069 0.931 43 H 0.065 0.935 44 H 0.083 0.917 45 H 0.086 0.914 46 H 0.139 0.861 47 H 0.139 0.861 48 H 0.054 0.946 49 H 0.073 0.927 50 H 0.065 0.935 51 H 0.219 0.781 52 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 8.143 -8.352 31.142 33.254 hybrid contribution 0.030 -0.786 -0.914 1.206 sum 8.173 -9.138 30.228 32.620 Atomic orbital electron populations 1.22043 0.95074 1.01638 1.02243 1.21312 0.94347 0.97568 0.83752 0.89827 1.46121 1.67047 1.13894 1.09953 1.20672 0.77716 0.87460 0.84633 1.90700 1.50281 1.16125 1.85089 1.21678 1.03082 0.99685 0.92996 1.20203 1.02647 0.96541 0.90070 1.19704 0.93349 1.02747 0.98012 1.20831 0.99294 0.95301 0.93141 1.20644 0.93423 1.07115 1.00556 1.17842 0.92887 0.91785 0.86847 1.46272 1.05408 1.61809 1.21981 1.21681 0.80708 1.01209 1.01718 1.21581 0.93281 0.98315 0.91619 1.20694 0.98840 1.04966 0.97466 1.20831 0.95002 0.96910 0.95797 1.20396 0.92071 0.95541 0.86213 0.93254 1.22440 0.99103 1.01059 0.99773 1.42282 1.78201 1.10686 1.04832 1.19152 1.36905 0.93840 0.87176 0.91230 1.24737 1.02058 0.95964 0.98026 1.69657 1.50574 1.08624 1.29030 0.86275 0.77728 0.78583 0.83602 1.21305 1.21715 1.21331 0.90225 0.93186 0.93512 0.76964 0.89073 0.89110 0.90557 0.90515 0.86096 0.86255 0.90331 0.92783 0.93116 0.93521 0.91721 0.91366 0.86052 0.86057 0.94567 0.92734 0.93457 0.78058 0.93422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.68 9.33 37.16 0.35 -2.34 16 2 C 0.13 2.34 2.21 -67.93 -0.15 2.19 16 3 H 0.08 1.65 7.58 -51.92 -0.39 1.26 16 4 N -0.72 -9.82 4.38 -53.80 -0.24 -10.06 16 5 C 0.51 7.12 7.79 -10.99 -0.09 7.04 16 6 O -0.54 -9.86 15.64 5.55 0.09 -9.77 16 7 C -0.13 -1.33 5.68 -27.88 -0.16 -1.49 16 8 C -0.06 -0.59 4.63 -27.89 -0.13 -0.72 16 9 C -0.14 -1.31 5.14 -104.58 -0.54 -1.85 16 10 C -0.07 -0.61 9.69 -39.61 -0.38 -0.99 16 11 C -0.20 -1.71 9.16 -39.38 -0.36 -2.07 16 12 C 0.21 1.84 6.54 -83.79 -0.55 1.29 16 13 N -0.64 -4.61 3.41 -187.55 -0.64 -5.25 16 14 C 0.09 0.46 10.62 59.85 0.64 1.09 16 15 C 0.10 0.48 10.10 59.85 0.60 1.09 16 16 C -0.20 -1.72 9.31 -39.38 -0.37 -2.09 16 17 C -0.07 -0.61 9.69 -39.61 -0.38 -0.99 16 18 C 0.17 3.24 2.52 -67.92 -0.17 3.06 16 19 H 0.05 0.94 8.08 -51.93 -0.42 0.52 16 20 C -0.16 -2.91 9.33 37.16 0.35 -2.56 16 21 N -0.72 -17.56 4.43 -53.42 -0.24 -17.79 16 22 C -0.24 -6.50 9.93 -15.06 -0.15 -6.65 16 23 H 0.07 1.82 7.83 -52.48 -0.41 1.41 16 24 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 25 N -0.93 -27.91 13.06 55.49 0.72 -27.18 16 26 Si 0.91 22.20 29.55 -169.99 -5.02 17.17 16 27 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 28 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 29 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 30 H 0.08 1.60 7.45 -51.93 -0.39 1.21 16 31 H 0.05 0.83 8.14 -51.92 -0.42 0.40 16 32 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.40 4.35 8.39 -40.82 -0.34 4.00 16 34 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 36 H 0.08 0.85 8.04 -51.93 -0.42 0.43 16 37 H 0.08 0.86 8.04 -51.93 -0.42 0.45 16 38 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 39 H 0.12 0.86 6.31 -52.48 -0.33 0.53 16 40 H 0.08 0.37 5.31 -51.93 -0.28 0.10 16 41 H 0.05 0.22 8.14 -51.93 -0.42 -0.21 16 42 H 0.05 0.22 8.14 -51.92 -0.42 -0.20 16 43 H 0.05 0.22 8.14 -51.93 -0.42 -0.20 16 44 H 0.06 0.23 8.07 -51.92 -0.42 -0.18 16 45 H 0.07 0.33 6.45 -51.93 -0.34 0.00 16 46 H 0.12 0.85 5.74 -52.49 -0.30 0.55 16 47 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 48 H 0.04 0.52 7.45 -51.93 -0.39 0.13 16 49 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 50 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 51 H 0.39 10.18 7.58 -40.82 -0.31 9.87 16 52 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 419.00 15.07 6.31 6.31 Total: -1.00 -32.83 419.00 -9.53 -42.35 By element: Atomic # 1 Polarization: 19.56 SS G_CDS: -8.93 Total: 10.63 kcal Atomic # 6 Polarization: -4.83 SS G_CDS: -1.59 Total: -6.41 kcal Atomic # 7 Polarization: -59.89 SS G_CDS: -0.39 Total: -60.28 kcal Atomic # 8 Polarization: -9.86 SS G_CDS: 0.09 Total: -9.77 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 6.31 Total: 6.31 kcal Total: -32.83 -9.53 -42.35 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717421437.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.089 kcal (2) G-P(sol) polarization free energy of solvation -32.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds