Wall clock time and date at job start Tue Mar 31 2020 17:36:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09007 * 109.46517 * 2 1 4 4 N 1.46497 * 109.47555 * 119.99890 * 2 1 3 5 5 C 1.34771 * 120.00151 * 275.00524 * 4 2 1 6 6 O 1.21288 * 120.00185 * 359.97438 * 5 4 2 7 7 C 1.50705 * 120.00052 * 180.02562 * 5 4 2 8 8 C 1.52994 * 109.46996 * 179.97438 * 7 5 4 9 9 C 1.50701 * 109.47175 * 179.97438 * 8 7 5 10 10 C 1.38295 * 119.92455 * 269.72894 * 9 8 7 11 11 C 1.38099 * 120.07077 * 179.72114 * 10 9 8 12 12 C 1.38913 * 119.92817 * 0.54966 * 11 10 9 13 13 N 1.39672 * 120.07476 * 179.70484 * 12 11 10 14 14 C 1.46500 * 119.99895 * 174.30805 * 13 12 11 15 15 C 1.46498 * 120.00134 * 354.30512 * 13 12 11 16 16 C 1.38914 * 119.84993 * 359.72183 * 12 11 10 17 17 C 1.38106 * 119.92356 * 0.02562 * 16 12 11 18 18 C 1.53003 * 109.46731 * 240.00466 * 2 1 3 19 19 H 1.08997 * 109.47325 * 299.99146 * 18 2 1 20 20 C 1.53009 * 109.46619 * 179.97438 * 18 2 1 21 21 N 1.46501 * 109.47432 * 59.99766 * 18 2 1 22 22 C 1.36932 * 119.99730 * 204.99722 * 21 18 2 23 23 H 1.08005 * 120.00421 * 0.02562 * 22 21 18 24 24 C 1.38813 * 119.99872 * 179.97438 * 22 21 18 25 25 N 1.31620 * 119.99834 * 0.02562 * 24 22 21 26 26 Si 1.86803 * 119.99914 * 180.02562 * 24 22 21 27 27 H 1.48496 * 109.47273 * 60.00194 * 26 24 22 28 28 H 1.48506 * 109.46875 * 180.02562 * 26 24 22 29 29 H 1.48499 * 109.47103 * 299.99811 * 26 24 22 30 30 H 1.08998 * 109.47465 * 59.99994 * 1 2 3 31 31 H 1.09007 * 109.46517 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46914 * 299.99738 * 1 2 3 33 33 H 0.97000 * 119.99602 * 94.99833 * 4 2 1 34 34 H 1.09001 * 109.47269 * 59.98967 * 7 5 4 35 35 H 1.09004 * 109.46431 * 299.99254 * 7 5 4 36 36 H 1.09001 * 109.47397 * 60.00057 * 8 7 5 37 37 H 1.09000 * 109.47470 * 299.99592 * 8 7 5 38 38 H 1.08001 * 119.95918 * 359.97438 * 10 9 8 39 39 H 1.08003 * 120.03641 * 180.26962 * 11 10 9 40 40 H 1.08998 * 109.47278 * 5.04681 * 14 13 12 41 41 H 1.08995 * 109.47754 * 125.05473 * 14 13 12 42 42 H 1.09010 * 109.46805 * 245.05740 * 14 13 12 43 43 H 1.09001 * 109.47244 * 90.00198 * 15 13 12 44 44 H 1.09008 * 109.46915 * 210.00423 * 15 13 12 45 45 H 1.08997 * 109.47114 * 329.99801 * 15 13 12 46 46 H 1.07995 * 120.03464 * 180.02562 * 16 12 11 47 47 H 1.08001 * 119.95982 * 179.97438 * 17 16 12 48 48 H 1.08998 * 109.47230 * 59.99753 * 20 18 2 49 49 H 1.09000 * 109.46802 * 179.97438 * 20 18 2 50 50 H 1.08995 * 109.46772 * 299.99244 * 20 18 2 51 51 H 0.96992 * 119.99809 * 24.99596 * 21 18 2 52 52 H 0.97006 * 119.99715 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 7 2.0185 -0.6905 1.1961 5 6 2.1472 -0.0183 2.3571 6 8 1.8590 1.1586 2.4115 7 6 2.6502 -0.7285 3.5874 8 6 2.7020 0.2547 4.7584 9 6 3.2044 -0.4557 5.9889 10 6 2.3082 -1.0653 6.8478 11 6 2.7657 -1.7220 7.9732 12 6 4.1269 -1.7601 8.2481 13 7 4.5924 -2.4182 9.3888 14 6 6.0327 -2.5656 9.6128 15 6 3.6406 -2.9609 10.3611 16 6 5.0239 -1.1419 7.3862 17 6 4.5600 -0.4913 6.2597 18 6 2.0400 -0.7212 -1.2494 19 1 1.6768 -1.7489 -1.2494 20 6 3.5701 -0.7206 -1.2496 21 7 1.5516 -0.0305 -2.4455 22 6 1.4208 -0.7137 -3.6250 23 1 1.6773 -1.7617 -3.6735 24 6 0.9576 -0.0594 -4.7583 25 7 0.6445 1.2176 -4.6991 26 14 0.7785 -0.9915 -6.3672 27 1 -0.1766 -2.1139 -6.1854 28 1 0.2696 -0.0730 -7.4173 29 1 2.1007 -1.5282 -6.7782 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3632 -1.0278 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 2.2492 -1.6317 1.1525 34 1 3.6495 -1.1204 3.3977 35 1 1.9779 -1.5508 3.8324 36 1 1.7029 0.6468 4.9483 37 1 3.3744 1.0768 4.5132 38 1 1.2497 -1.0311 6.6360 39 1 2.0657 -2.2016 8.6414 40 1 6.5779 -2.0262 8.8383 41 1 6.2920 -2.1587 10.5901 42 1 6.2998 -3.6218 9.5764 43 1 3.3924 -3.9878 10.0925 44 1 4.0870 -2.9432 11.3554 45 1 2.7341 -2.3556 10.3591 46 1 6.0827 -1.1700 7.5968 47 1 5.2569 -0.0102 5.5894 48 1 3.9338 -1.2342 -0.3597 49 1 3.9334 -1.2348 -2.1394 50 1 3.9329 0.3072 -1.2499 51 1 1.3209 0.9105 -2.4019 52 1 0.3204 1.6747 -5.4910 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717421437.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:36:01 Heat of formation + Delta-G solvation = -20.529458 kcal Electronic energy + Delta-G solvation = -27655.872490 eV Core-core repulsion = 23847.506199 eV Total energy + Delta-G solvation = -3808.366291 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -40.99431 -40.44845 -38.33059 -37.43494 -35.54552 -34.19955 -33.44833 -32.02555 -31.24858 -30.13048 -29.77890 -28.97199 -26.45022 -25.89633 -24.55313 -23.49807 -23.20925 -21.49672 -21.33775 -20.89904 -19.33275 -18.39147 -17.95005 -17.04498 -16.88486 -16.54137 -16.20704 -15.95294 -15.89836 -15.42730 -15.29170 -15.01960 -14.90703 -14.65266 -14.49906 -14.43452 -14.06790 -13.80160 -13.70910 -13.38248 -13.34626 -13.15322 -12.91447 -12.85764 -12.78970 -12.72678 -12.69258 -12.55399 -12.22994 -12.19444 -12.09498 -11.99530 -11.71465 -11.47679 -11.43271 -10.95868 -10.82909 -10.49193 -10.01163 -9.76473 -8.99584 -8.08211 -7.90379 -5.19366 0.60266 0.69459 1.49722 1.52418 1.58315 1.76944 2.25179 2.30645 2.61687 3.00123 3.43515 3.75542 3.88049 3.92391 4.05964 4.07238 4.19763 4.21664 4.27103 4.29220 4.38123 4.45118 4.53176 4.54446 4.61197 4.64077 4.67978 4.75303 4.78846 4.83534 4.89734 4.91296 4.91643 4.94373 4.99381 5.08124 5.09362 5.22687 5.25322 5.30787 5.33146 5.44299 5.53163 5.53915 5.59192 5.66038 5.91847 6.02057 6.30183 6.40086 6.61368 6.69535 7.36454 7.39794 8.10624 8.33900 9.32891 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.030775 B = 0.001637 C = 0.001614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.607269 B =17098.294883 C =17345.914597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.150 3.850 3 H 0.055 0.945 4 N -0.707 5.707 5 C 0.508 3.492 6 O -0.589 6.589 7 C -0.121 4.121 8 C -0.051 4.051 9 C -0.147 4.147 10 C -0.073 4.073 11 C -0.205 4.205 12 C 0.199 3.801 13 N -0.648 5.648 14 C 0.085 3.915 15 C 0.090 3.910 16 C -0.207 4.207 17 C -0.073 4.073 18 C 0.167 3.833 19 H 0.061 0.939 20 C -0.154 4.154 21 N -0.731 5.731 22 C -0.235 4.235 23 H 0.080 0.920 24 C -0.076 4.076 25 N -0.971 5.971 26 Si 0.972 3.028 27 H -0.277 1.277 28 H -0.300 1.300 29 H -0.279 1.279 30 H 0.048 0.952 31 H 0.064 0.936 32 H 0.047 0.953 33 H 0.415 0.585 34 H 0.114 0.886 35 H 0.114 0.886 36 H 0.063 0.937 37 H 0.062 0.938 38 H 0.129 0.871 39 H 0.132 0.868 40 H 0.080 0.920 41 H 0.065 0.935 42 H 0.058 0.942 43 H 0.050 0.950 44 H 0.080 0.920 45 H 0.068 0.932 46 H 0.135 0.865 47 H 0.129 0.871 48 H 0.075 0.925 49 H 0.042 0.958 50 H 0.030 0.970 51 H 0.371 0.629 52 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.385 -11.701 32.873 36.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.044 3.956 3 H 0.074 0.926 4 N -0.359 5.359 5 C 0.297 3.703 6 O -0.470 6.470 7 C -0.161 4.161 8 C -0.088 4.088 9 C -0.149 4.149 10 C -0.092 4.092 11 C -0.227 4.227 12 C 0.097 3.903 13 N -0.360 5.360 14 C -0.058 4.058 15 C -0.052 4.052 16 C -0.229 4.229 17 C -0.092 4.092 18 C 0.058 3.942 19 H 0.079 0.921 20 C -0.214 4.214 21 N -0.371 5.371 22 C -0.367 4.367 23 H 0.098 0.902 24 C -0.269 4.269 25 N -0.621 5.621 26 Si 0.801 3.199 27 H -0.203 1.203 28 H -0.227 1.227 29 H -0.205 1.205 30 H 0.068 0.932 31 H 0.083 0.917 32 H 0.066 0.934 33 H 0.252 0.748 34 H 0.132 0.868 35 H 0.132 0.868 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.147 0.853 39 H 0.149 0.851 40 H 0.098 0.902 41 H 0.084 0.916 42 H 0.076 0.924 43 H 0.068 0.932 44 H 0.098 0.902 45 H 0.087 0.913 46 H 0.153 0.847 47 H 0.147 0.853 48 H 0.094 0.906 49 H 0.061 0.939 50 H 0.050 0.950 51 H 0.203 0.797 52 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 9.256 -11.136 32.964 36.004 hybrid contribution -0.257 0.015 -1.293 1.319 sum 8.999 -11.120 31.671 34.752 Atomic orbital electron populations 1.21921 0.95379 1.02027 1.00758 1.20852 0.93940 0.96269 0.84583 0.92627 1.45913 1.66705 1.14613 1.08715 1.21415 0.76551 0.86962 0.85408 1.90693 1.52155 1.18369 1.85749 1.21670 1.04545 0.99527 0.90326 1.20083 1.01584 0.96376 0.90806 1.19625 0.93740 1.03566 0.97993 1.20979 0.99734 0.95216 0.93226 1.20828 0.93838 1.07294 1.00731 1.18060 0.93091 0.91744 0.87423 1.46539 1.06534 1.61274 1.21678 1.21816 0.79715 1.01834 1.02412 1.21710 0.93196 0.98362 0.91959 1.20895 0.99687 1.04940 0.97371 1.20982 0.95017 0.96971 0.96208 1.20582 0.92967 0.95581 0.85051 0.92092 1.22293 0.97505 1.00454 1.01103 1.42471 1.78478 1.10203 1.05959 1.19574 1.34826 0.94286 0.87972 0.90169 1.25540 1.03068 0.96814 1.01438 1.69831 1.52606 1.10305 1.29391 0.85234 0.77906 0.77266 0.79463 1.20304 1.22671 1.20490 0.93248 0.91745 0.93427 0.74832 0.86831 0.86787 0.91861 0.91916 0.85286 0.85071 0.90195 0.91627 0.92366 0.93155 0.90180 0.91336 0.84707 0.85288 0.90618 0.93929 0.95040 0.79733 0.94223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.03 9.33 71.98 0.67 -4.36 16 2 C 0.15 5.12 2.21 45.00 0.10 5.22 16 3 H 0.06 2.25 7.58 -2.38 -0.02 2.23 16 4 N -0.71 -17.87 4.38 -442.51 -1.94 -19.81 16 5 C 0.51 13.49 7.79 87.66 0.68 14.18 16 6 O -0.59 -21.42 15.64 -3.05 -0.05 -21.46 16 7 C -0.12 -2.11 5.68 29.85 0.17 -1.95 16 8 C -0.05 -1.00 4.63 29.85 0.14 -0.87 16 9 C -0.15 -2.64 5.14 -19.84 -0.10 -2.74 16 10 C -0.07 -1.23 9.69 22.25 0.22 -1.01 16 11 C -0.20 -3.27 9.16 22.40 0.21 -3.06 16 12 C 0.20 3.20 6.54 38.22 0.25 3.45 16 13 N -0.65 -8.05 3.41 -747.27 -2.55 -10.60 16 14 C 0.08 0.69 10.62 127.77 1.36 2.04 16 15 C 0.09 0.74 10.10 127.77 1.29 2.03 16 16 C -0.21 -3.28 9.31 22.40 0.21 -3.07 16 17 C -0.07 -1.23 9.69 22.25 0.22 -1.02 16 18 C 0.17 6.25 2.52 45.00 0.11 6.36 16 19 H 0.06 2.17 8.08 -2.39 -0.02 2.15 16 20 C -0.15 -5.21 9.33 71.99 0.67 -4.54 16 21 N -0.73 -36.04 4.43 -322.92 -1.43 -37.47 16 22 C -0.23 -12.69 9.93 84.03 0.83 -11.85 16 23 H 0.08 4.09 7.83 -2.91 -0.02 4.06 16 24 C -0.08 -4.35 5.50 84.86 0.47 -3.88 16 25 N -0.97 -59.67 13.06 21.65 0.28 -59.39 16 26 Si 0.97 45.82 29.55 68.60 2.03 47.84 16 27 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 28 H -0.30 -14.46 7.11 99.48 0.71 -13.75 16 29 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 30 H 0.05 2.04 7.45 -2.39 -0.02 2.02 16 31 H 0.06 2.05 8.14 -2.38 -0.02 2.03 16 32 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.41 7.62 8.39 -92.71 -0.78 6.85 16 34 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.06 1.40 8.04 -2.39 -0.02 1.38 16 37 H 0.06 1.40 8.04 -2.39 -0.02 1.38 16 38 H 0.13 1.86 8.06 -2.91 -0.02 1.83 16 39 H 0.13 1.67 6.31 -2.91 -0.02 1.65 16 40 H 0.08 0.61 5.31 -2.39 -0.01 0.60 16 41 H 0.07 0.38 8.14 -2.39 -0.02 0.36 16 42 H 0.06 0.39 8.14 -2.38 -0.02 0.37 16 43 H 0.05 0.38 8.14 -2.39 -0.02 0.36 16 44 H 0.08 0.40 8.07 -2.38 -0.02 0.38 16 45 H 0.07 0.55 6.45 -2.39 -0.02 0.53 16 46 H 0.14 1.66 5.74 -2.91 -0.02 1.64 16 47 H 0.13 1.87 8.06 -2.91 -0.02 1.85 16 48 H 0.08 1.95 7.45 -2.39 -0.02 1.93 16 49 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 50 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 51 H 0.37 20.27 7.58 -92.71 -0.70 19.56 16 52 H 0.25 14.98 8.31 -92.70 -0.77 14.21 16 Total: -1.00 -71.98 419.00 3.27 -68.71 By element: Atomic # 1 Polarization: 37.82 SS G_CDS: -0.57 Total: 37.25 kcal Atomic # 6 Polarization: -12.56 SS G_CDS: 7.49 Total: -5.08 kcal Atomic # 7 Polarization: -121.63 SS G_CDS: -5.63 Total: -127.27 kcal Atomic # 8 Polarization: -21.42 SS G_CDS: -0.05 Total: -21.46 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 2.03 Total: 47.84 kcal Total: -71.98 3.27 -68.71 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717421437.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.183 kcal (2) G-P(sol) polarization free energy of solvation -71.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds