Wall clock time and date at job start Tue Mar 31 2020 18:14:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46498 * 109.47369 * 2 1 4 4 C 1.46499 * 120.00038 * 270.00149 * 3 2 1 5 5 C 1.53000 * 109.46982 * 269.99881 * 4 3 2 6 6 C 1.39048 * 119.99738 * 90.00458 * 3 2 1 7 7 C 1.39225 * 119.93040 * 179.97438 * 6 3 2 8 8 C 1.37607 * 120.06806 * 180.02562 * 7 6 3 9 9 C 1.39799 * 119.93121 * 0.02562 * 8 7 6 10 10 C 1.47519 * 120.06836 * 180.02562 * 9 8 7 11 11 O 1.21595 * 119.99796 * 0.02562 * 10 9 8 12 12 N 1.34774 * 119.99937 * 180.02562 * 10 9 8 13 13 C 1.46504 * 120.00051 * 179.72632 * 12 10 9 14 14 C 1.52995 * 109.46982 * 180.27819 * 13 12 10 15 15 H 1.09005 * 109.47247 * 65.00282 * 14 13 12 16 16 C 1.53004 * 109.46752 * 185.00092 * 14 13 12 17 17 N 1.46494 * 109.47403 * 304.99973 * 14 13 12 18 18 C 1.46504 * 119.99964 * 300.00251 * 17 14 13 19 19 C 1.36937 * 120.00228 * 120.00086 * 17 14 13 20 20 H 1.07997 * 120.00068 * 20.35511 * 19 17 14 21 21 C 1.38810 * 119.99882 * 200.34992 * 19 17 14 22 22 N 1.31618 * 120.00395 * 15.00497 * 21 19 17 23 23 Si 1.86809 * 119.99918 * 195.00106 * 21 19 17 24 24 H 1.48496 * 109.46883 * 85.00441 * 23 21 19 25 25 H 1.48493 * 109.47116 * 205.00656 * 23 21 19 26 26 H 1.48500 * 109.46833 * 325.00217 * 23 21 19 27 27 C 1.39797 * 119.86081 * 0.28065 * 9 8 7 28 28 C 1.37613 * 119.93142 * 359.41938 * 27 9 8 29 29 H 1.08997 * 109.47351 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46824 * 299.99919 * 1 2 3 31 31 H 1.09000 * 109.47245 * 59.99181 * 1 2 3 32 32 H 1.09002 * 109.46824 * 240.00081 * 2 1 3 33 33 H 1.09000 * 109.47245 * 120.00818 * 2 1 3 34 34 H 1.08999 * 109.47543 * 30.00353 * 4 3 2 35 35 H 1.08999 * 109.46746 * 150.00270 * 4 3 2 36 36 H 1.08999 * 109.47062 * 60.00583 * 5 4 3 37 37 H 1.09004 * 109.47058 * 180.02562 * 5 4 3 38 38 H 1.09001 * 109.47537 * 299.99822 * 5 4 3 39 39 H 1.07997 * 119.96281 * 0.02562 * 7 6 3 40 40 H 1.07997 * 120.03123 * 180.02562 * 8 7 6 41 41 H 0.97003 * 120.00015 * 0.02562 * 12 10 9 42 42 H 1.09001 * 109.46968 * 300.27974 * 13 12 10 43 43 H 1.08998 * 109.47271 * 60.27486 * 13 12 10 44 44 H 1.09002 * 109.46831 * 180.02562 * 16 14 13 45 45 H 1.09005 * 109.47313 * 299.99609 * 16 14 13 46 46 H 1.08997 * 109.47357 * 59.99841 * 16 14 13 47 47 H 1.09002 * 109.47244 * 95.11360 * 18 17 14 48 48 H 1.09004 * 109.47643 * 215.11844 * 18 17 14 49 49 H 1.09004 * 109.47017 * 335.11451 * 18 17 14 50 50 H 0.97000 * 120.00188 * 179.97438 * 22 21 19 51 51 H 1.08004 * 120.03485 * 179.72379 * 27 9 8 52 52 H 1.07998 * 119.96467 * 180.29691 * 28 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.7075 1.8313 -1.7104 6 6 2.2502 2.0366 1.2042 7 6 2.7148 3.3490 1.2026 8 6 2.9457 4.0001 2.3927 9 6 2.7138 3.3422 3.6042 10 6 2.9598 4.0375 4.8818 11 8 3.3642 5.1842 4.8818 12 7 2.7362 3.4018 6.0489 13 6 2.9862 4.0903 7.3177 14 6 2.6613 3.1505 8.4805 15 1 3.3514 2.3067 8.4694 16 6 2.8024 3.9075 9.8026 17 7 1.2879 2.6599 8.3429 18 6 0.1697 3.6064 8.3299 19 6 1.0491 1.3165 8.2264 20 1 1.7920 0.6054 8.5560 21 6 -0.1480 0.8688 7.6846 22 7 -0.9209 1.7005 7.0188 23 14 -0.6620 -0.9141 7.9005 24 1 -1.3560 -1.0748 9.2035 25 1 -1.5800 -1.3014 6.7995 26 1 0.5417 -1.7833 7.8702 27 6 2.2533 2.0222 3.6024 28 6 2.0184 1.3786 2.4090 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5140 -0.8899 32 1 1.8932 -0.5138 -0.8900 33 1 1.8933 -0.5140 0.8899 34 1 1.5817 1.6878 -2.0284 35 1 2.0956 3.1410 -1.1383 36 1 3.8744 0.7621 -1.8408 37 1 3.8893 2.3455 -2.6541 38 1 4.3884 2.2154 -0.9508 39 1 2.8942 3.8565 0.2663 40 1 3.3058 5.0183 2.3907 41 1 2.4138 2.4869 6.0489 42 1 4.0342 4.3852 7.3707 43 1 2.3556 4.9771 7.3802 44 1 2.5714 3.2378 10.6311 45 1 3.8244 4.2725 9.9051 46 1 2.1125 4.7512 9.8137 47 1 -0.0911 3.8465 7.2991 48 1 -0.6907 3.1594 8.8278 49 1 0.4592 4.5178 8.8531 50 1 -1.7572 1.3875 6.6399 51 1 2.0775 1.5098 4.5367 52 1 1.6581 0.3605 2.4070 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717496756.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:14:53 Heat of formation + Delta-G solvation = 16.072333 kcal Electronic energy + Delta-G solvation = -29564.982494 eV Core-core repulsion = 25758.203376 eV Total energy + Delta-G solvation = -3806.779118 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -39.94405 -38.77497 -36.81342 -36.21489 -33.60685 -32.70359 -32.08540 -30.95603 -30.39127 -29.27409 -28.10751 -26.01165 -25.60441 -24.17907 -23.48962 -22.89730 -21.75369 -20.86726 -19.44893 -19.24925 -17.81914 -16.90074 -16.58463 -16.25077 -15.36904 -15.16847 -14.90813 -14.57608 -14.41083 -14.05206 -13.94861 -13.82520 -13.55543 -13.34080 -13.00640 -12.82396 -12.78449 -12.53897 -12.37093 -12.31753 -12.07585 -11.96243 -11.91454 -11.82384 -11.55467 -11.30596 -11.16491 -11.06512 -10.79662 -10.68328 -10.52365 -10.38535 -10.26998 -9.83281 -9.76419 -9.74805 -9.26056 -8.74553 -8.58055 -8.24911 -7.22977 -6.81920 -5.74365 -3.19733 1.40776 1.70551 2.97312 3.34643 3.41930 3.42925 3.44437 4.00221 4.36002 4.45549 4.63014 4.71532 4.90565 5.04315 5.11133 5.17223 5.20982 5.26884 5.35743 5.37672 5.41531 5.46008 5.53203 5.62035 5.63357 5.68683 5.70774 5.75421 5.87312 5.94546 6.01133 6.08588 6.13980 6.20887 6.27809 6.37622 6.40461 6.43934 6.62426 6.73218 6.80923 6.84702 6.94550 6.96327 7.22864 7.27711 7.42171 7.50983 7.74231 7.81415 8.35135 8.38360 8.98100 9.20459 9.84599 10.33873 11.28433 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.010948 B = 0.003680 C = 0.002899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2556.934628 B = 7607.736937 C = 9657.062938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.117 3.883 3 N -0.624 5.624 4 C 0.117 3.883 5 C -0.172 4.172 6 C 0.236 3.764 7 C -0.214 4.214 8 C -0.015 4.015 9 C -0.188 4.188 10 C 0.558 3.442 11 O -0.570 6.570 12 N -0.699 5.699 13 C 0.109 3.891 14 C 0.158 3.842 15 H 0.068 0.932 16 C -0.158 4.158 17 N -0.594 5.594 18 C 0.163 3.837 19 C -0.262 4.262 20 H 0.068 0.932 21 C 0.006 3.994 22 N -0.898 5.898 23 Si 0.898 3.102 24 H -0.289 1.289 25 H -0.292 1.292 26 H -0.281 1.281 27 C -0.023 4.023 28 C -0.205 4.205 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.054 0.946 32 H 0.071 0.929 33 H 0.078 0.922 34 H 0.071 0.929 35 H 0.077 0.923 36 H 0.054 0.946 37 H 0.062 0.938 38 H 0.060 0.940 39 H 0.123 0.877 40 H 0.130 0.870 41 H 0.413 0.587 42 H 0.052 0.948 43 H 0.057 0.943 44 H 0.056 0.944 45 H 0.045 0.955 46 H 0.051 0.949 47 H 0.030 0.970 48 H 0.040 0.960 49 H -0.001 1.001 50 H 0.252 0.748 51 H 0.133 0.867 52 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.497 -1.518 -14.765 16.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.006 4.006 3 N -0.334 5.334 4 C -0.006 4.006 5 C -0.231 4.231 6 C 0.134 3.866 7 C -0.236 4.236 8 C -0.034 4.034 9 C -0.193 4.193 10 C 0.346 3.654 11 O -0.452 6.452 12 N -0.349 5.349 13 C -0.018 4.018 14 C 0.049 3.951 15 H 0.086 0.914 16 C -0.217 4.217 17 N -0.317 5.317 18 C 0.019 3.981 19 C -0.391 4.391 20 H 0.086 0.914 21 C -0.193 4.193 22 N -0.542 5.542 23 Si 0.728 3.272 24 H -0.216 1.216 25 H -0.219 1.219 26 H -0.206 1.206 27 C -0.043 4.043 28 C -0.227 4.227 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.073 0.927 32 H 0.089 0.911 33 H 0.097 0.903 34 H 0.090 0.910 35 H 0.095 0.905 36 H 0.074 0.926 37 H 0.081 0.919 38 H 0.080 0.920 39 H 0.141 0.859 40 H 0.148 0.852 41 H 0.251 0.749 42 H 0.070 0.930 43 H 0.075 0.925 44 H 0.075 0.925 45 H 0.064 0.936 46 H 0.070 0.930 47 H 0.048 0.952 48 H 0.059 0.941 49 H 0.017 0.983 50 H 0.063 0.937 51 H 0.150 0.850 52 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 6.552 -0.867 -14.981 16.374 hybrid contribution -0.772 -1.445 0.069 1.640 sum 5.780 -2.312 -14.911 16.159 Atomic orbital electron populations 1.22237 0.96225 1.02059 1.02742 1.21410 0.94148 0.82395 1.02633 1.46534 1.70763 1.13200 1.02928 1.21388 0.96190 0.97934 0.85071 1.22232 0.97446 1.02014 1.01407 1.17962 0.91725 0.91277 0.85663 1.20533 1.10700 0.94117 0.98292 1.20929 0.93035 0.99052 0.90423 1.19742 1.10418 0.95568 0.93575 1.18151 0.77439 0.85807 0.83990 1.90679 1.48523 1.17923 1.88091 1.45761 1.65802 1.18519 1.04829 1.21911 0.99082 0.96470 0.84324 1.20643 0.88452 0.94745 0.91273 0.91416 1.22171 0.99970 1.00725 0.98873 1.43953 0.99128 1.03528 1.85091 1.20754 0.89510 0.89062 0.98813 1.19216 1.02567 0.82225 1.35114 0.91407 1.24920 0.98883 0.97259 0.98209 1.70103 1.13557 1.33853 1.36716 0.86381 0.78325 0.85133 0.77314 1.21606 1.21862 1.20628 1.21238 0.91793 0.93088 0.98180 1.20589 1.10300 1.01109 0.90737 0.91796 0.91759 0.92730 0.91083 0.90348 0.91036 0.90496 0.92640 0.91913 0.92047 0.85931 0.85219 0.74934 0.92955 0.92476 0.92478 0.93578 0.92958 0.95174 0.94086 0.98260 0.93746 0.84951 0.85722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.60 10.24 37.16 0.38 -1.22 16 2 C 0.12 1.06 5.86 -4.04 -0.02 1.04 16 3 N -0.62 -6.56 2.59 -171.76 -0.44 -7.01 16 4 C 0.12 0.96 5.86 -4.04 -0.02 0.94 16 5 C -0.17 -1.28 10.24 37.16 0.38 -0.90 16 6 C 0.24 3.16 6.55 -83.86 -0.55 2.61 16 7 C -0.21 -2.90 9.18 -39.44 -0.36 -3.26 16 8 C -0.01 -0.23 9.58 -39.23 -0.38 -0.61 16 9 C -0.19 -3.40 5.88 -104.95 -0.62 -4.01 16 10 C 0.56 11.48 7.76 -12.48 -0.10 11.39 16 11 O -0.57 -12.99 16.34 5.28 0.09 -12.91 16 12 N -0.70 -14.17 5.34 -61.35 -0.33 -14.50 16 13 C 0.11 2.11 4.97 -4.04 -0.02 2.09 16 14 C 0.16 3.07 2.87 -67.93 -0.19 2.88 16 15 H 0.07 1.30 7.85 -51.93 -0.41 0.89 16 16 C -0.16 -2.66 9.18 37.16 0.34 -2.32 16 17 N -0.59 -13.82 2.29 -173.48 -0.40 -14.22 16 18 C 0.16 3.93 8.11 59.85 0.49 4.42 16 19 C -0.26 -6.61 9.34 -15.06 -0.14 -6.75 16 20 H 0.07 1.69 7.81 -52.49 -0.41 1.28 16 21 C 0.01 0.17 5.06 -17.43 -0.09 0.08 16 22 N -0.90 -24.55 10.67 55.49 0.59 -23.96 16 23 Si 0.90 20.72 29.58 -169.99 -5.03 15.69 16 24 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 25 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 26 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 27 C -0.02 -0.40 9.53 -39.23 -0.37 -0.77 16 28 C -0.21 -3.03 9.18 -39.45 -0.36 -3.39 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.07 0.51 8.07 -51.93 -0.42 0.09 16 33 H 0.08 0.74 6.17 -51.93 -0.32 0.42 16 34 H 0.07 0.49 8.07 -51.93 -0.42 0.07 16 35 H 0.08 0.63 6.17 -51.93 -0.32 0.31 16 36 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.12 1.36 6.11 -52.49 -0.32 1.04 16 40 H 0.13 2.03 7.64 -52.49 -0.40 1.63 16 41 H 0.41 8.63 5.91 -40.82 -0.24 8.39 16 42 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 43 H 0.06 1.19 7.84 -51.93 -0.41 0.79 16 44 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 45 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 46 H 0.05 0.89 6.66 -51.93 -0.35 0.55 16 47 H 0.03 0.80 7.40 -51.93 -0.38 0.42 16 48 H 0.04 1.07 7.21 -51.93 -0.37 0.69 16 49 H 0.00 -0.02 6.44 -51.93 -0.33 -0.36 16 50 H 0.25 6.83 8.31 -40.82 -0.34 6.49 16 51 H 0.13 2.37 6.39 -52.48 -0.34 2.03 16 52 H 0.12 1.67 6.11 -52.49 -0.32 1.35 16 LS Contribution 410.96 15.07 6.19 6.19 Total: -1.00 -29.74 410.96 -9.67 -39.41 By element: Atomic # 1 Polarization: 17.81 SS G_CDS: -8.70 Total: 9.11 kcal Atomic # 6 Polarization: 3.83 SS G_CDS: -1.64 Total: 2.19 kcal Atomic # 7 Polarization: -59.11 SS G_CDS: -0.58 Total: -59.69 kcal Atomic # 8 Polarization: -12.99 SS G_CDS: 0.09 Total: -12.91 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.03 Total: 15.69 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -29.74 -9.67 -39.41 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717496756.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.477 kcal (2) G-P(sol) polarization free energy of solvation -29.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.405 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds