Wall clock time and date at job start Tue Mar 31 2020 18:14:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46498 * 109.47369 * 2 1 4 4 C 1.46499 * 120.00038 * 270.00149 * 3 2 1 5 5 C 1.53000 * 109.46982 * 269.99881 * 4 3 2 6 6 C 1.39048 * 119.99738 * 90.00458 * 3 2 1 7 7 C 1.39225 * 119.93040 * 179.97438 * 6 3 2 8 8 C 1.37607 * 120.06806 * 180.02562 * 7 6 3 9 9 C 1.39799 * 119.93121 * 0.02562 * 8 7 6 10 10 C 1.47519 * 120.06836 * 180.02562 * 9 8 7 11 11 O 1.21595 * 119.99796 * 0.02562 * 10 9 8 12 12 N 1.34774 * 119.99937 * 180.02562 * 10 9 8 13 13 C 1.46504 * 120.00051 * 179.72632 * 12 10 9 14 14 C 1.52995 * 109.46982 * 180.27819 * 13 12 10 15 15 H 1.09005 * 109.47247 * 65.00282 * 14 13 12 16 16 C 1.53004 * 109.46752 * 185.00092 * 14 13 12 17 17 N 1.46494 * 109.47403 * 304.99973 * 14 13 12 18 18 C 1.46504 * 119.99964 * 300.00251 * 17 14 13 19 19 C 1.36937 * 120.00228 * 120.00086 * 17 14 13 20 20 H 1.07997 * 120.00068 * 20.35511 * 19 17 14 21 21 C 1.38810 * 119.99882 * 200.34992 * 19 17 14 22 22 N 1.31618 * 120.00395 * 15.00497 * 21 19 17 23 23 Si 1.86809 * 119.99918 * 195.00106 * 21 19 17 24 24 H 1.48496 * 109.46883 * 85.00441 * 23 21 19 25 25 H 1.48493 * 109.47116 * 205.00656 * 23 21 19 26 26 H 1.48500 * 109.46833 * 325.00217 * 23 21 19 27 27 C 1.39797 * 119.86081 * 0.28065 * 9 8 7 28 28 C 1.37613 * 119.93142 * 359.41938 * 27 9 8 29 29 H 1.08997 * 109.47351 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46824 * 299.99919 * 1 2 3 31 31 H 1.09000 * 109.47245 * 59.99181 * 1 2 3 32 32 H 1.09002 * 109.46824 * 240.00081 * 2 1 3 33 33 H 1.09000 * 109.47245 * 120.00818 * 2 1 3 34 34 H 1.08999 * 109.47543 * 30.00353 * 4 3 2 35 35 H 1.08999 * 109.46746 * 150.00270 * 4 3 2 36 36 H 1.08999 * 109.47062 * 60.00583 * 5 4 3 37 37 H 1.09004 * 109.47058 * 180.02562 * 5 4 3 38 38 H 1.09001 * 109.47537 * 299.99822 * 5 4 3 39 39 H 1.07997 * 119.96281 * 0.02562 * 7 6 3 40 40 H 1.07997 * 120.03123 * 180.02562 * 8 7 6 41 41 H 0.97003 * 120.00015 * 0.02562 * 12 10 9 42 42 H 1.09001 * 109.46968 * 300.27974 * 13 12 10 43 43 H 1.08998 * 109.47271 * 60.27486 * 13 12 10 44 44 H 1.09002 * 109.46831 * 180.02562 * 16 14 13 45 45 H 1.09005 * 109.47313 * 299.99609 * 16 14 13 46 46 H 1.08997 * 109.47357 * 59.99841 * 16 14 13 47 47 H 1.09002 * 109.47244 * 95.11360 * 18 17 14 48 48 H 1.09004 * 109.47643 * 215.11844 * 18 17 14 49 49 H 1.09004 * 109.47017 * 335.11451 * 18 17 14 50 50 H 0.97000 * 120.00188 * 179.97438 * 22 21 19 51 51 H 1.08004 * 120.03485 * 179.72379 * 27 9 8 52 52 H 1.07998 * 119.96467 * 180.29691 * 28 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.7075 1.8313 -1.7104 6 6 2.2502 2.0366 1.2042 7 6 2.7148 3.3490 1.2026 8 6 2.9457 4.0001 2.3927 9 6 2.7138 3.3422 3.6042 10 6 2.9598 4.0375 4.8818 11 8 3.3642 5.1842 4.8818 12 7 2.7362 3.4018 6.0489 13 6 2.9862 4.0903 7.3177 14 6 2.6613 3.1505 8.4805 15 1 3.3514 2.3067 8.4694 16 6 2.8024 3.9075 9.8026 17 7 1.2879 2.6599 8.3429 18 6 0.1697 3.6064 8.3299 19 6 1.0491 1.3165 8.2264 20 1 1.7920 0.6054 8.5560 21 6 -0.1480 0.8688 7.6846 22 7 -0.9209 1.7005 7.0188 23 14 -0.6620 -0.9141 7.9005 24 1 -1.3560 -1.0748 9.2035 25 1 -1.5800 -1.3014 6.7995 26 1 0.5417 -1.7833 7.8702 27 6 2.2533 2.0222 3.6024 28 6 2.0184 1.3786 2.4090 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5140 -0.8899 32 1 1.8932 -0.5138 -0.8900 33 1 1.8933 -0.5140 0.8899 34 1 1.5817 1.6878 -2.0284 35 1 2.0956 3.1410 -1.1383 36 1 3.8744 0.7621 -1.8408 37 1 3.8893 2.3455 -2.6541 38 1 4.3884 2.2154 -0.9508 39 1 2.8942 3.8565 0.2663 40 1 3.3058 5.0183 2.3907 41 1 2.4138 2.4869 6.0489 42 1 4.0342 4.3852 7.3707 43 1 2.3556 4.9771 7.3802 44 1 2.5714 3.2378 10.6311 45 1 3.8244 4.2725 9.9051 46 1 2.1125 4.7512 9.8137 47 1 -0.0911 3.8465 7.2991 48 1 -0.6907 3.1594 8.8278 49 1 0.4592 4.5178 8.8531 50 1 -1.7572 1.3875 6.6399 51 1 2.0775 1.5098 4.5367 52 1 1.6581 0.3605 2.4070 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717496756.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:14:52 Heat of formation + Delta-G solvation = 0.831880 kcal Electronic energy + Delta-G solvation = -29565.643369 eV Core-core repulsion = 25758.203376 eV Total energy + Delta-G solvation = -3807.439993 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.20566 -40.11888 -38.40454 -37.43091 -35.35860 -33.84128 -33.42628 -32.08102 -31.55211 -31.00379 -29.11865 -27.98870 -27.00948 -25.01305 -24.96630 -24.37352 -22.84405 -21.99535 -21.02138 -20.64259 -19.05755 -18.79390 -17.78134 -17.34981 -17.04189 -16.62867 -16.20508 -16.01198 -15.61364 -15.43445 -15.29779 -14.94873 -14.65138 -14.56918 -14.44857 -14.23081 -14.02818 -13.84370 -13.63561 -13.53487 -13.32588 -13.17777 -13.10712 -12.82872 -12.76103 -12.67171 -12.58563 -12.46952 -12.26022 -12.12543 -12.06995 -11.86672 -11.70848 -11.54711 -11.46143 -10.87241 -10.83309 -10.57434 -9.95796 -9.88300 -8.77063 -8.25952 -7.73989 -5.20828 0.12395 0.50589 1.49687 1.53203 1.59097 2.01247 2.11757 2.47256 2.56113 3.03069 3.38791 3.67025 3.79266 3.88719 4.01257 4.06031 4.10487 4.20469 4.24715 4.40381 4.41497 4.47239 4.50375 4.52431 4.54893 4.62964 4.69284 4.72620 4.83424 4.85474 4.86013 4.92329 4.98869 4.99453 5.10023 5.12608 5.24971 5.28498 5.30530 5.31909 5.39265 5.40863 5.49775 5.54726 5.66794 5.73216 5.77081 5.80206 6.34023 6.37110 6.48538 6.75533 7.20658 7.36938 7.92671 8.38355 9.27416 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.010948 B = 0.003680 C = 0.002899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2556.934628 B = 7607.736937 C = 9657.062938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.112 3.888 3 N -0.617 5.617 4 C 0.110 3.890 5 C -0.167 4.167 6 C 0.248 3.752 7 C -0.208 4.208 8 C -0.018 4.018 9 C -0.220 4.220 10 C 0.553 3.447 11 O -0.600 6.600 12 N -0.702 5.702 13 C 0.113 3.887 14 C 0.156 3.844 15 H 0.073 0.927 16 C -0.148 4.148 17 N -0.602 5.602 18 C 0.182 3.818 19 C -0.261 4.261 20 H 0.074 0.926 21 C -0.040 4.040 22 N -0.926 5.926 23 Si 0.956 3.044 24 H -0.294 1.294 25 H -0.299 1.299 26 H -0.268 1.268 27 C -0.031 4.031 28 C -0.212 4.212 29 H 0.077 0.923 30 H 0.035 0.965 31 H 0.062 0.938 32 H 0.099 0.901 33 H 0.073 0.927 34 H 0.093 0.907 35 H 0.079 0.921 36 H 0.057 0.943 37 H 0.081 0.919 38 H 0.045 0.955 39 H 0.152 0.848 40 H 0.129 0.871 41 H 0.408 0.592 42 H 0.069 0.931 43 H 0.040 0.960 44 H 0.055 0.945 45 H 0.077 0.923 46 H 0.047 0.953 47 H -0.002 1.002 48 H 0.015 0.985 49 H 0.023 0.977 50 H 0.244 0.756 51 H 0.114 0.886 52 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.489 -2.661 -16.610 18.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.011 4.011 3 N -0.325 5.325 4 C -0.012 4.012 5 C -0.225 4.225 6 C 0.142 3.858 7 C -0.230 4.230 8 C -0.038 4.038 9 C -0.225 4.225 10 C 0.343 3.657 11 O -0.485 6.485 12 N -0.351 5.351 13 C -0.013 4.013 14 C 0.049 3.951 15 H 0.091 0.909 16 C -0.207 4.207 17 N -0.325 5.325 18 C 0.037 3.963 19 C -0.391 4.391 20 H 0.092 0.908 21 C -0.236 4.236 22 N -0.573 5.573 23 Si 0.786 3.214 24 H -0.222 1.222 25 H -0.226 1.226 26 H -0.193 1.193 27 C -0.051 4.051 28 C -0.235 4.235 29 H 0.096 0.904 30 H 0.055 0.945 31 H 0.081 0.919 32 H 0.117 0.883 33 H 0.092 0.908 34 H 0.112 0.888 35 H 0.097 0.903 36 H 0.076 0.924 37 H 0.100 0.900 38 H 0.064 0.936 39 H 0.169 0.831 40 H 0.146 0.854 41 H 0.246 0.754 42 H 0.087 0.913 43 H 0.058 0.942 44 H 0.074 0.926 45 H 0.095 0.905 46 H 0.066 0.934 47 H 0.016 0.984 48 H 0.034 0.966 49 H 0.041 0.959 50 H 0.054 0.946 51 H 0.132 0.868 52 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 7.575 -2.034 -16.839 18.576 hybrid contribution -1.056 -1.131 0.502 1.626 sum 6.520 -3.165 -16.336 17.872 Atomic orbital electron populations 1.22189 0.96223 1.02703 1.01687 1.21598 0.94056 0.81618 1.03807 1.46846 1.69142 1.13765 1.02756 1.21657 0.97367 0.98014 0.84208 1.22175 0.96199 1.02350 1.01785 1.18041 0.90119 0.91213 0.86415 1.20756 1.09672 0.94146 0.98465 1.21006 0.93103 0.99102 0.90594 1.19642 1.13503 0.96272 0.93100 1.18597 0.76679 0.85562 0.84853 1.90636 1.50181 1.19095 1.88578 1.45834 1.65741 1.18297 1.05259 1.21885 0.99597 0.95703 0.84086 1.20841 0.86400 0.95270 0.92573 0.90865 1.22055 1.01872 1.00066 0.96733 1.44085 1.00458 1.02953 1.84987 1.20406 0.89211 0.89893 0.96765 1.19505 1.02466 0.83272 1.33884 0.90810 1.25534 0.99211 1.00367 0.98469 1.70271 1.13616 1.35295 1.38085 0.85452 0.77969 0.81647 0.76338 1.22181 1.22621 1.19264 1.21100 0.92670 0.92908 0.98413 1.20698 1.10456 1.01694 0.90624 0.90411 0.94550 0.91942 0.88271 0.90842 0.88839 0.90313 0.92402 0.90023 0.93621 0.83081 0.85353 0.75426 0.91321 0.94195 0.92590 0.90464 0.93350 0.98398 0.96605 0.95896 0.94624 0.86761 0.84596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.76 10.24 71.98 0.74 -2.02 16 2 C 0.11 1.72 5.86 86.38 0.51 2.22 16 3 N -0.62 -11.39 2.59 -697.32 -1.81 -13.19 16 4 C 0.11 1.41 5.86 86.38 0.51 1.92 16 5 C -0.17 -1.91 10.24 71.98 0.74 -1.17 16 6 C 0.25 6.30 6.55 38.47 0.25 6.55 16 7 C -0.21 -5.37 9.18 22.36 0.21 -5.17 16 8 C -0.02 -0.59 9.58 22.50 0.22 -0.37 16 9 C -0.22 -8.26 5.88 -20.08 -0.12 -8.38 16 10 C 0.55 23.74 7.76 86.69 0.67 24.41 16 11 O -0.60 -28.32 16.34 -4.01 -0.07 -28.39 16 12 N -0.70 -29.53 5.34 -466.29 -2.49 -32.02 16 13 C 0.11 4.45 4.97 86.38 0.43 4.88 16 14 C 0.16 6.01 2.87 44.99 0.13 6.14 16 15 H 0.07 2.74 7.85 -2.38 -0.02 2.72 16 16 C -0.15 -4.73 9.18 71.98 0.66 -4.07 16 17 N -0.60 -28.27 2.29 -702.77 -1.61 -29.88 16 18 C 0.18 9.02 8.11 127.77 1.04 10.06 16 19 C -0.26 -13.27 9.34 84.03 0.79 -12.49 16 20 H 0.07 3.62 7.81 -2.91 -0.02 3.60 16 21 C -0.04 -2.09 5.06 84.86 0.43 -1.66 16 22 N -0.93 -52.34 10.67 21.65 0.23 -52.11 16 23 Si 0.96 43.06 29.58 68.60 2.03 45.09 16 24 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 25 H -0.30 -13.73 7.11 99.48 0.71 -13.03 16 26 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 27 C -0.03 -1.10 9.53 22.50 0.21 -0.89 16 28 C -0.21 -6.27 9.18 22.36 0.21 -6.07 16 29 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.10 1.04 8.07 -2.39 -0.02 1.02 16 33 H 0.07 1.23 6.17 -2.39 -0.01 1.22 16 34 H 0.09 0.87 8.07 -2.39 -0.02 0.85 16 35 H 0.08 1.02 6.17 -2.39 -0.01 1.01 16 36 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 37 H 0.08 0.66 8.14 -2.38 -0.02 0.64 16 38 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 39 H 0.15 2.97 6.11 -2.91 -0.02 2.95 16 40 H 0.13 4.09 7.64 -2.91 -0.02 4.07 16 41 H 0.41 17.86 5.91 -92.71 -0.55 17.31 16 42 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 43 H 0.04 1.70 7.84 -2.39 -0.02 1.68 16 44 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 45 H 0.08 2.00 8.14 -2.38 -0.02 1.98 16 46 H 0.05 1.58 6.66 -2.39 -0.02 1.56 16 47 H 0.00 -0.13 7.40 -2.39 -0.02 -0.15 16 48 H 0.02 0.83 7.21 -2.39 -0.02 0.81 16 49 H 0.02 1.00 6.44 -2.39 -0.02 0.98 16 50 H 0.24 13.71 8.31 -92.71 -0.77 12.93 16 51 H 0.11 4.37 6.39 -2.91 -0.02 4.35 16 52 H 0.14 3.61 6.11 -2.91 -0.02 3.59 16 Total: -1.00 -65.92 410.96 4.25 -61.67 By element: Atomic # 1 Polarization: 34.57 SS G_CDS: 0.36 Total: 34.93 kcal Atomic # 6 Polarization: 6.29 SS G_CDS: 7.60 Total: 13.89 kcal Atomic # 7 Polarization: -121.52 SS G_CDS: -5.67 Total: -127.19 kcal Atomic # 8 Polarization: -28.32 SS G_CDS: -0.07 Total: -28.39 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.09 kcal Total: -65.92 4.25 -61.67 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717496756.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.498 kcal (2) G-P(sol) polarization free energy of solvation -65.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.666 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds