Wall clock time and date at job start Tue Mar 31 2020 17:31:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47202 * 2 1 4 4 C 1.52999 * 109.47747 * 239.99427 * 2 1 3 5 5 C 1.50700 * 109.46657 * 65.00055 * 4 2 1 6 6 O 1.21279 * 120.00410 * 0.02562 * 5 4 2 7 7 N 1.34781 * 119.99801 * 180.02562 * 5 4 2 8 8 C 1.46504 * 119.99883 * 175.02333 * 7 5 4 9 9 H 1.09003 * 109.46813 * 4.79688 * 8 7 5 10 10 C 1.53001 * 109.47343 * 244.79558 * 8 7 5 11 11 N 1.46497 * 109.46853 * 55.00366 * 10 8 7 12 12 C 1.36940 * 119.99698 * 179.97438 * 11 10 8 13 13 H 1.08001 * 120.00384 * 0.02562 * 12 11 10 14 14 C 1.38820 * 119.99950 * 179.97438 * 12 11 10 15 15 N 1.31622 * 119.99874 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 120.00218 * 179.97438 * 14 12 11 17 17 H 1.48505 * 109.46883 * 0.02562 * 16 14 12 18 18 H 1.48500 * 109.47074 * 119.99751 * 16 14 12 19 19 H 1.48498 * 109.47120 * 240.00377 * 16 14 12 20 20 C 1.53000 * 109.46924 * 124.79515 * 8 7 5 21 21 C 1.54266 * 110.03002 * 57.03311 * 20 8 7 22 22 C 1.54889 * 104.19485 * 217.10524 * 21 20 8 23 23 C 1.54893 * 102.74885 * 37.94422 * 22 21 20 24 24 C 1.53877 * 110.03105 * 299.86877 * 20 8 7 25 25 N 1.46499 * 109.46961 * 119.99489 * 2 1 3 26 26 C 1.36348 * 125.63770 * 240.00010 * 25 2 1 27 27 C 1.34846 * 108.21987 * 179.76685 * 26 25 2 28 28 C 1.40891 * 107.41762 * 0.23139 * 27 26 25 29 29 C 1.34852 * 107.41599 * 359.97438 * 28 27 26 30 30 H 1.09003 * 109.47202 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47548 * 300.00582 * 1 2 3 32 32 H 1.09002 * 109.47067 * 60.00262 * 1 2 3 33 33 H 1.08999 * 109.47439 * 184.99866 * 4 2 1 34 34 H 1.09001 * 109.46772 * 305.00498 * 4 2 1 35 35 H 0.96996 * 120.00007 * 355.03092 * 7 5 4 36 36 H 1.09003 * 109.47057 * 175.00298 * 10 8 7 37 37 H 1.08999 * 109.47326 * 295.00286 * 10 8 7 38 38 H 0.97006 * 120.00348 * 359.97438 * 11 10 8 39 39 H 0.97000 * 120.00098 * 179.97438 * 15 14 12 40 40 H 1.09000 * 110.01860 * 178.46961 * 20 8 7 41 41 H 1.09002 * 110.48823 * 335.77807 * 21 20 8 42 42 H 1.09002 * 110.48943 * 98.42791 * 21 20 8 43 43 H 1.09001 * 110.75885 * 279.62890 * 22 21 20 44 44 H 1.09002 * 110.91350 * 156.32730 * 22 21 20 45 45 H 1.09004 * 110.48147 * 203.37919 * 23 22 21 46 46 H 1.08994 * 110.60131 * 80.79103 * 23 22 21 47 47 H 1.08999 * 110.02849 * 238.56521 * 24 20 8 48 48 H 1.08994 * 110.03260 * 359.97438 * 24 20 8 49 49 H 1.08002 * 125.88773 * 0.03596 * 26 25 2 50 50 H 1.08002 * 126.29446 * 180.22264 * 27 26 25 51 51 H 1.08000 * 126.29621 * 179.97438 * 28 27 26 52 52 H 1.08004 * 125.88766 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 1.6415 0.0569 -2.4765 6 8 1.0118 1.0872 -2.3633 7 7 1.9847 -0.3921 -3.7001 8 6 1.5053 0.3038 -4.8968 9 1 0.9615 1.2013 -4.6018 10 6 0.5750 -0.6199 -5.6857 11 7 -0.5030 -1.0894 -4.8118 12 6 -1.4633 -1.9335 -5.3022 13 1 -1.4259 -2.2534 -6.3331 14 6 -2.4846 -2.3788 -4.4740 15 7 -2.5300 -1.9893 -3.2176 16 14 -3.7950 -3.5296 -5.1431 17 1 -3.5197 -3.8144 -6.5743 18 1 -3.7779 -4.7997 -4.3739 19 1 -5.1288 -2.8899 -5.0129 20 6 2.6980 0.6945 -5.7717 21 6 3.5198 -0.5594 -6.1354 22 6 4.9895 -0.0712 -6.1088 23 6 5.0030 0.9073 -4.9081 24 6 3.6411 1.6270 -4.9914 25 7 2.0182 -0.6905 1.1962 26 6 2.8054 -0.1415 2.1648 27 6 3.0397 -1.0828 3.1015 28 6 2.3773 -2.2575 2.6938 29 6 1.7629 -1.9891 1.5237 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 3.1264 -0.7995 -1.2054 34 1 1.6054 -1.7199 -1.2950 35 1 2.5490 -1.1761 -3.7883 36 1 0.1488 -0.0738 -6.5272 37 1 1.1406 -1.4748 -6.0564 38 1 -0.5365 -0.8024 -3.8858 39 1 -3.2438 -2.3001 -2.6389 40 1 2.3496 1.1893 -6.6783 41 1 3.3653 -1.3446 -5.3954 42 1 3.2538 -0.9144 -7.1311 43 1 5.2408 0.4485 -7.0334 44 1 5.6727 -0.9029 -5.9368 45 1 5.8193 1.6227 -5.0082 46 1 5.0888 0.3608 -3.9690 47 1 3.7509 2.5741 -5.5197 48 1 3.2487 1.8015 -3.9896 49 1 3.1738 0.8736 2.1812 50 1 3.6273 -0.9591 3.9991 51 1 2.3639 -3.1998 3.2213 52 1 1.1680 -2.6822 0.9474 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724102224.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:31:28 Heat of formation + Delta-G solvation = 9.310784 kcal Electronic energy + Delta-G solvation = -30107.118310 eV Core-core repulsion = 26300.045989 eV Total energy + Delta-G solvation = -3807.072321 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.14136 -40.01771 -38.22062 -35.41627 -34.66761 -33.49409 -31.39974 -30.03223 -29.41286 -28.73834 -28.60078 -27.62745 -26.17528 -23.49750 -22.66898 -21.56799 -20.88372 -20.34937 -20.04639 -19.30189 -19.16542 -17.52287 -17.18281 -16.46161 -15.96284 -15.77010 -15.11840 -14.82722 -14.56073 -14.42422 -13.99563 -13.72998 -13.51881 -13.45611 -13.28351 -13.04390 -12.99720 -12.73680 -12.37613 -12.15729 -12.09587 -11.94585 -11.76923 -11.51023 -11.23032 -11.16837 -11.10457 -11.05302 -10.94321 -10.86587 -10.69046 -10.62184 -10.50488 -10.36288 -10.04990 -9.73725 -9.51373 -8.90013 -8.62613 -8.48060 -8.02119 -6.92800 -5.77415 -3.06038 2.43276 2.87033 3.01708 3.18725 3.41107 3.47024 3.49172 3.60965 4.51314 4.59932 4.61792 4.65333 4.74171 4.83964 4.98921 5.17979 5.22025 5.29560 5.38735 5.43059 5.44716 5.53615 5.54946 5.58619 5.62934 5.64439 5.67363 5.74731 5.76625 5.81692 5.88031 5.92547 6.02237 6.04679 6.11167 6.19310 6.20885 6.26396 6.31813 6.39950 6.42760 6.45586 6.47333 6.64251 6.71785 6.96100 7.13583 7.40430 7.54581 7.68126 7.79473 8.40676 8.53496 9.52655 10.10565 10.46060 11.44690 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.006755 B = 0.004832 C = 0.003063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4143.881102 B = 5792.897304 C = 9138.362163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.152 3.848 3 H 0.101 0.899 4 C -0.151 4.151 5 C 0.527 3.473 6 O -0.539 6.539 7 N -0.706 5.706 8 C 0.138 3.862 9 H 0.100 0.900 10 C 0.142 3.858 11 N -0.728 5.728 12 C -0.240 4.240 13 H 0.069 0.931 14 C -0.012 4.012 15 N -0.928 5.928 16 Si 0.904 3.096 17 H -0.281 1.281 18 H -0.292 1.292 19 H -0.292 1.292 20 C -0.098 4.098 21 C -0.118 4.118 22 C -0.125 4.125 23 C -0.122 4.122 24 C -0.118 4.118 25 N -0.439 5.439 26 C -0.019 4.019 27 C -0.208 4.208 28 C -0.210 4.210 29 C -0.007 4.007 30 H 0.064 0.936 31 H 0.054 0.946 32 H 0.101 0.899 33 H 0.092 0.908 34 H 0.104 0.896 35 H 0.397 0.603 36 H 0.026 0.974 37 H 0.023 0.977 38 H 0.386 0.614 39 H 0.253 0.747 40 H 0.082 0.918 41 H 0.066 0.934 42 H 0.067 0.933 43 H 0.064 0.936 44 H 0.062 0.938 45 H 0.059 0.941 46 H 0.061 0.939 47 H 0.059 0.941 48 H 0.067 0.933 49 H 0.156 0.844 50 H 0.130 0.870 51 H 0.130 0.870 52 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.811 4.331 3.035 17.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.050 3.950 3 H 0.119 0.881 4 C -0.192 4.192 5 C 0.313 3.687 6 O -0.416 6.416 7 N -0.357 5.357 8 C 0.033 3.967 9 H 0.118 0.882 10 C 0.013 3.987 11 N -0.373 5.373 12 C -0.371 4.371 13 H 0.087 0.913 14 C -0.208 4.208 15 N -0.577 5.577 16 Si 0.735 3.265 17 H -0.206 1.206 18 H -0.219 1.219 19 H -0.219 1.219 20 C -0.118 4.118 21 C -0.155 4.155 22 C -0.162 4.162 23 C -0.159 4.159 24 C -0.155 4.155 25 N -0.114 5.114 26 C -0.149 4.149 27 C -0.232 4.232 28 C -0.234 4.234 29 C -0.137 4.137 30 H 0.083 0.917 31 H 0.074 0.926 32 H 0.120 0.880 33 H 0.111 0.889 34 H 0.123 0.877 35 H 0.231 0.769 36 H 0.044 0.956 37 H 0.040 0.960 38 H 0.220 0.780 39 H 0.063 0.937 40 H 0.100 0.900 41 H 0.084 0.916 42 H 0.086 0.914 43 H 0.083 0.917 44 H 0.081 0.919 45 H 0.077 0.923 46 H 0.080 0.920 47 H 0.078 0.922 48 H 0.086 0.914 49 H 0.173 0.827 50 H 0.148 0.852 51 H 0.148 0.852 52 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 16.102 5.154 2.683 17.119 hybrid contribution -0.584 -1.105 -0.079 1.253 sum 15.518 4.048 2.604 16.247 Atomic orbital electron populations 1.22264 0.91823 1.03775 1.04294 1.21125 0.96670 0.95960 0.81287 0.88059 1.21981 1.02848 1.01628 0.92750 1.20065 0.78922 0.85227 0.84473 1.90679 1.40035 1.24488 1.86414 1.45784 1.52576 1.32049 1.05278 1.21347 0.93710 0.97153 0.84522 0.88168 1.21042 0.89592 0.94849 0.93217 1.42293 1.27334 1.56603 1.11054 1.19249 1.02711 1.19767 0.95421 0.91302 1.24716 0.99148 1.01021 0.95890 1.69676 1.34471 1.48576 1.04935 0.86164 0.81988 0.80430 0.77870 1.20643 1.21942 1.21896 1.22087 0.95156 0.96077 0.98455 1.22413 0.94166 0.97324 1.01635 1.22499 0.96815 0.98634 0.98269 1.22324 0.97117 0.98121 0.98349 1.22148 0.94651 0.97941 1.00789 1.44443 1.38666 1.10152 1.18144 1.21800 1.01639 0.99639 0.91834 1.20820 1.07259 0.94135 1.01026 1.20843 1.05314 0.99277 0.98002 1.21840 1.06088 0.86308 0.99501 0.91699 0.92643 0.88004 0.88932 0.87738 0.76866 0.95613 0.95958 0.78001 0.93661 0.90008 0.91552 0.91399 0.91746 0.91921 0.92262 0.92021 0.92235 0.91449 0.82667 0.85241 0.85163 0.82367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.61 8.98 37.16 0.33 -2.28 16 2 C 0.15 2.06 2.67 -67.93 -0.18 1.87 16 3 H 0.10 1.34 7.88 -51.93 -0.41 0.93 16 4 C -0.15 -1.97 5.16 -27.88 -0.14 -2.12 16 5 C 0.53 8.17 6.65 -10.98 -0.07 8.10 16 6 O -0.54 -10.03 13.31 5.56 0.07 -9.95 16 7 N -0.71 -10.06 3.75 -53.80 -0.20 -10.26 16 8 C 0.14 2.12 2.04 -67.93 -0.14 1.98 16 9 H 0.10 1.81 6.91 -51.93 -0.36 1.45 16 10 C 0.14 2.69 5.84 -4.04 -0.02 2.67 16 11 N -0.73 -17.92 5.43 -59.91 -0.33 -18.25 16 12 C -0.24 -6.61 9.99 -15.05 -0.15 -6.76 16 13 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 14 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 15 N -0.93 -27.51 13.06 55.49 0.72 -26.79 16 16 Si 0.90 22.25 29.55 -169.99 -5.02 17.22 16 17 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 18 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 19 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 20 C -0.10 -1.16 2.82 -89.50 -0.25 -1.42 16 21 C -0.12 -1.25 5.12 -25.07 -0.13 -1.38 16 22 C -0.12 -1.13 6.91 -24.74 -0.17 -1.30 16 23 C -0.12 -1.15 6.83 -25.07 -0.17 -1.32 16 24 C -0.12 -1.30 6.19 -25.61 -0.16 -1.46 16 25 N -0.44 -5.82 2.62 -110.02 -0.29 -6.11 16 26 C -0.02 -0.24 11.39 -16.75 -0.19 -0.43 16 27 C -0.21 -2.60 10.86 -39.78 -0.43 -3.03 16 28 C -0.21 -2.74 10.86 -39.78 -0.43 -3.17 16 29 C -0.01 -0.09 10.45 -16.75 -0.18 -0.27 16 30 H 0.06 1.09 7.92 -51.93 -0.41 0.68 16 31 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.10 1.91 5.95 -51.93 -0.31 1.60 16 33 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.10 1.43 8.06 -51.93 -0.42 1.02 16 35 H 0.40 4.95 6.96 -40.82 -0.28 4.67 16 36 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 37 H 0.02 0.42 7.14 -51.93 -0.37 0.05 16 38 H 0.39 10.12 6.81 -40.82 -0.28 9.84 16 39 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 40 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.07 0.73 5.96 -51.93 -0.31 0.42 16 42 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 43 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 47 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 48 H 0.07 0.86 7.12 -51.93 -0.37 0.49 16 49 H 0.16 1.55 8.06 -52.49 -0.42 1.13 16 50 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16 51 H 0.13 1.49 8.06 -52.49 -0.42 1.06 16 52 H 0.16 2.03 8.06 -52.48 -0.42 1.60 16 LS Contribution 407.78 15.07 6.15 6.15 Total: -1.00 -31.36 407.78 -10.46 -41.82 By element: Atomic # 1 Polarization: 25.87 SS G_CDS: -8.98 Total: 16.89 kcal Atomic # 6 Polarization: -8.13 SS G_CDS: -2.58 Total: -10.72 kcal Atomic # 7 Polarization: -61.32 SS G_CDS: -0.09 Total: -61.41 kcal Atomic # 8 Polarization: -10.03 SS G_CDS: 0.07 Total: -9.95 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -31.36 -10.46 -41.82 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724102224.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.134 kcal (2) G-P(sol) polarization free energy of solvation -31.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.823 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds