Wall clock time and date at job start Tue Mar 31 2020 17:31:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47202 * 2 1 4 4 C 1.52999 * 109.47747 * 239.99427 * 2 1 3 5 5 C 1.50700 * 109.46657 * 65.00055 * 4 2 1 6 6 O 1.21279 * 120.00410 * 0.02562 * 5 4 2 7 7 N 1.34781 * 119.99801 * 180.02562 * 5 4 2 8 8 C 1.46504 * 119.99883 * 175.02333 * 7 5 4 9 9 H 1.09003 * 109.46813 * 4.79688 * 8 7 5 10 10 C 1.53001 * 109.47343 * 244.79558 * 8 7 5 11 11 N 1.46497 * 109.46853 * 55.00366 * 10 8 7 12 12 C 1.36940 * 119.99698 * 179.97438 * 11 10 8 13 13 H 1.08001 * 120.00384 * 0.02562 * 12 11 10 14 14 C 1.38820 * 119.99950 * 179.97438 * 12 11 10 15 15 N 1.31622 * 119.99874 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 120.00218 * 179.97438 * 14 12 11 17 17 H 1.48505 * 109.46883 * 0.02562 * 16 14 12 18 18 H 1.48500 * 109.47074 * 119.99751 * 16 14 12 19 19 H 1.48498 * 109.47120 * 240.00377 * 16 14 12 20 20 C 1.53000 * 109.46924 * 124.79515 * 8 7 5 21 21 C 1.54266 * 110.03002 * 57.03311 * 20 8 7 22 22 C 1.54889 * 104.19485 * 217.10524 * 21 20 8 23 23 C 1.54893 * 102.74885 * 37.94422 * 22 21 20 24 24 C 1.53877 * 110.03105 * 299.86877 * 20 8 7 25 25 N 1.46499 * 109.46961 * 119.99489 * 2 1 3 26 26 C 1.36348 * 125.63770 * 240.00010 * 25 2 1 27 27 C 1.34846 * 108.21987 * 179.76685 * 26 25 2 28 28 C 1.40891 * 107.41762 * 0.23139 * 27 26 25 29 29 C 1.34852 * 107.41599 * 359.97438 * 28 27 26 30 30 H 1.09003 * 109.47202 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47548 * 300.00582 * 1 2 3 32 32 H 1.09002 * 109.47067 * 60.00262 * 1 2 3 33 33 H 1.08999 * 109.47439 * 184.99866 * 4 2 1 34 34 H 1.09001 * 109.46772 * 305.00498 * 4 2 1 35 35 H 0.96996 * 120.00007 * 355.03092 * 7 5 4 36 36 H 1.09003 * 109.47057 * 175.00298 * 10 8 7 37 37 H 1.08999 * 109.47326 * 295.00286 * 10 8 7 38 38 H 0.97006 * 120.00348 * 359.97438 * 11 10 8 39 39 H 0.97000 * 120.00098 * 179.97438 * 15 14 12 40 40 H 1.09000 * 110.01860 * 178.46961 * 20 8 7 41 41 H 1.09002 * 110.48823 * 335.77807 * 21 20 8 42 42 H 1.09002 * 110.48943 * 98.42791 * 21 20 8 43 43 H 1.09001 * 110.75885 * 279.62890 * 22 21 20 44 44 H 1.09002 * 110.91350 * 156.32730 * 22 21 20 45 45 H 1.09004 * 110.48147 * 203.37919 * 23 22 21 46 46 H 1.08994 * 110.60131 * 80.79103 * 23 22 21 47 47 H 1.08999 * 110.02849 * 238.56521 * 24 20 8 48 48 H 1.08994 * 110.03260 * 359.97438 * 24 20 8 49 49 H 1.08002 * 125.88773 * 0.03596 * 26 25 2 50 50 H 1.08002 * 126.29446 * 180.22264 * 27 26 25 51 51 H 1.08000 * 126.29621 * 179.97438 * 28 27 26 52 52 H 1.08004 * 125.88766 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 1.6415 0.0569 -2.4765 6 8 1.0118 1.0872 -2.3633 7 7 1.9847 -0.3921 -3.7001 8 6 1.5053 0.3038 -4.8968 9 1 0.9615 1.2013 -4.6018 10 6 0.5750 -0.6199 -5.6857 11 7 -0.5030 -1.0894 -4.8118 12 6 -1.4633 -1.9335 -5.3022 13 1 -1.4259 -2.2534 -6.3331 14 6 -2.4846 -2.3788 -4.4740 15 7 -2.5300 -1.9893 -3.2176 16 14 -3.7950 -3.5296 -5.1431 17 1 -3.5197 -3.8144 -6.5743 18 1 -3.7779 -4.7997 -4.3739 19 1 -5.1288 -2.8899 -5.0129 20 6 2.6980 0.6945 -5.7717 21 6 3.5198 -0.5594 -6.1354 22 6 4.9895 -0.0712 -6.1088 23 6 5.0030 0.9073 -4.9081 24 6 3.6411 1.6270 -4.9914 25 7 2.0182 -0.6905 1.1962 26 6 2.8054 -0.1415 2.1648 27 6 3.0397 -1.0828 3.1015 28 6 2.3773 -2.2575 2.6938 29 6 1.7629 -1.9891 1.5237 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 3.1264 -0.7995 -1.2054 34 1 1.6054 -1.7199 -1.2950 35 1 2.5490 -1.1761 -3.7883 36 1 0.1488 -0.0738 -6.5272 37 1 1.1406 -1.4748 -6.0564 38 1 -0.5365 -0.8024 -3.8858 39 1 -3.2438 -2.3001 -2.6389 40 1 2.3496 1.1893 -6.6783 41 1 3.3653 -1.3446 -5.3954 42 1 3.2538 -0.9144 -7.1311 43 1 5.2408 0.4485 -7.0334 44 1 5.6727 -0.9029 -5.9368 45 1 5.8193 1.6227 -5.0082 46 1 5.0888 0.3608 -3.9690 47 1 3.7509 2.5741 -5.5197 48 1 3.2487 1.8015 -3.9896 49 1 3.1738 0.8736 2.1812 50 1 3.6273 -0.9591 3.9991 51 1 2.3639 -3.1998 3.2213 52 1 1.1680 -2.6822 0.9474 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724102224.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:31:27 Heat of formation + Delta-G solvation = -7.284587 kcal Electronic energy + Delta-G solvation = -30107.837939 eV Core-core repulsion = 26300.045989 eV Total energy + Delta-G solvation = -3807.791950 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.17379 -41.20539 -39.29408 -36.83047 -35.93318 -35.07784 -33.09838 -31.44744 -30.50514 -29.59698 -29.57308 -28.81606 -27.70613 -25.18355 -23.95105 -22.86916 -22.00390 -21.32207 -21.00591 -20.40006 -20.22166 -19.16262 -18.64047 -17.56417 -17.18082 -16.91021 -16.49089 -16.19208 -15.88046 -15.56928 -15.22940 -15.19466 -15.00207 -14.72339 -14.37059 -14.26225 -14.11139 -13.95338 -13.58748 -13.54527 -13.12648 -13.10591 -12.99537 -12.91640 -12.80907 -12.79862 -12.35567 -12.13352 -12.11494 -11.99175 -11.90163 -11.84151 -11.63886 -11.52523 -11.44758 -11.36221 -11.00124 -10.76971 -9.90816 -9.50052 -9.01578 -8.97528 -7.93246 -5.21793 1.42011 1.45328 1.46270 1.55715 1.65252 1.89801 2.20610 2.45410 2.55189 3.40045 3.49905 3.57013 3.69602 3.75745 3.82988 3.88902 4.12470 4.17833 4.22704 4.29735 4.41937 4.43329 4.47272 4.51304 4.59014 4.62064 4.68990 4.71184 4.74729 4.79435 4.83791 4.89176 4.90535 4.92430 4.95737 5.07489 5.14587 5.18580 5.27179 5.31215 5.40105 5.44436 5.46877 5.49490 5.51249 5.54661 5.68302 6.16374 6.27059 6.40405 6.53456 6.60009 7.31780 7.35110 8.11315 8.34688 9.29093 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.006755 B = 0.004832 C = 0.003063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4143.881102 B = 5792.897304 C = 9138.362163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.162 3.838 3 H 0.109 0.891 4 C -0.140 4.140 5 C 0.523 3.477 6 O -0.573 6.573 7 N -0.697 5.697 8 C 0.150 3.850 9 H 0.070 0.930 10 C 0.140 3.860 11 N -0.741 5.741 12 C -0.243 4.243 13 H 0.075 0.925 14 C -0.071 4.071 15 N -0.962 5.962 16 Si 0.968 3.032 17 H -0.266 1.266 18 H -0.293 1.293 19 H -0.298 1.298 20 C -0.091 4.091 21 C -0.118 4.118 22 C -0.117 4.117 23 C -0.117 4.117 24 C -0.114 4.114 25 N -0.442 5.442 26 C -0.023 4.023 27 C -0.216 4.216 28 C -0.216 4.216 29 C -0.028 4.028 30 H 0.048 0.952 31 H 0.060 0.940 32 H 0.070 0.930 33 H 0.122 0.878 34 H 0.097 0.903 35 H 0.407 0.593 36 H 0.024 0.976 37 H 0.037 0.963 38 H 0.374 0.626 39 H 0.248 0.752 40 H 0.086 0.914 41 H 0.062 0.938 42 H 0.070 0.930 43 H 0.073 0.927 44 H 0.075 0.925 45 H 0.071 0.929 46 H 0.061 0.939 47 H 0.066 0.934 48 H 0.046 0.954 49 H 0.180 0.820 50 H 0.150 0.850 51 H 0.143 0.857 52 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.156 3.927 2.469 19.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.059 3.941 3 H 0.127 0.873 4 C -0.181 4.181 5 C 0.310 3.690 6 O -0.453 6.453 7 N -0.348 5.348 8 C 0.044 3.956 9 H 0.088 0.912 10 C 0.013 3.987 11 N -0.384 5.384 12 C -0.375 4.375 13 H 0.093 0.907 14 C -0.263 4.263 15 N -0.612 5.612 16 Si 0.798 3.202 17 H -0.191 1.191 18 H -0.221 1.221 19 H -0.225 1.225 20 C -0.111 4.111 21 C -0.155 4.155 22 C -0.154 4.154 23 C -0.155 4.155 24 C -0.152 4.152 25 N -0.118 5.118 26 C -0.152 4.152 27 C -0.241 4.241 28 C -0.241 4.241 29 C -0.158 4.158 30 H 0.067 0.933 31 H 0.079 0.921 32 H 0.089 0.911 33 H 0.140 0.860 34 H 0.116 0.884 35 H 0.244 0.756 36 H 0.041 0.959 37 H 0.055 0.945 38 H 0.207 0.793 39 H 0.057 0.943 40 H 0.104 0.896 41 H 0.081 0.919 42 H 0.089 0.911 43 H 0.091 0.909 44 H 0.093 0.907 45 H 0.090 0.910 46 H 0.080 0.920 47 H 0.085 0.915 48 H 0.065 0.935 49 H 0.197 0.803 50 H 0.167 0.833 51 H 0.161 0.839 52 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 18.495 4.730 2.074 19.203 hybrid contribution -1.309 -0.940 0.078 1.613 sum 17.186 3.790 2.152 17.730 Atomic orbital electron populations 1.22101 0.94030 1.02188 1.02946 1.20919 0.94744 0.96524 0.81876 0.87320 1.21898 1.04479 1.00438 0.91237 1.20499 0.78240 0.84937 0.85354 1.90667 1.41535 1.26198 1.86928 1.45696 1.52190 1.32215 1.04738 1.21101 0.94451 0.95007 0.84996 0.91175 1.21233 0.88901 0.95776 0.92836 1.42497 1.28330 1.56359 1.11212 1.19635 1.03024 1.19305 0.95570 0.90745 1.25482 1.01481 1.03117 0.96261 1.69839 1.35104 1.50170 1.06105 0.85156 0.78951 0.78215 0.77922 1.19063 1.22052 1.22549 1.22039 0.93950 0.97243 0.97852 1.22417 0.95199 0.96331 1.01583 1.22464 0.95608 0.98912 0.98428 1.22308 0.96223 0.98316 0.98648 1.22097 0.95349 0.98304 0.99445 1.44399 1.39099 1.10083 1.18190 1.22291 1.00963 1.00757 0.91230 1.21143 1.07351 0.93806 1.01752 1.21136 1.04955 1.00186 0.97792 1.21985 1.06937 0.86683 1.00197 0.93336 0.92133 0.91093 0.86038 0.88442 0.75585 0.95862 0.94515 0.79328 0.94312 0.89563 0.91920 0.91135 0.90873 0.90663 0.90983 0.91982 0.91491 0.93509 0.80299 0.83273 0.83926 0.82571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.17 8.98 71.98 0.65 -4.53 16 2 C 0.16 4.38 2.67 44.99 0.12 4.50 16 3 H 0.11 2.81 7.88 -2.39 -0.02 2.79 16 4 C -0.14 -3.62 5.16 29.85 0.15 -3.47 16 5 C 0.52 16.52 6.65 87.66 0.58 17.11 16 6 O -0.57 -22.29 13.31 -3.02 -0.04 -22.33 16 7 N -0.70 -19.87 3.75 -442.52 -1.66 -21.53 16 8 C 0.15 4.64 2.04 44.99 0.09 4.74 16 9 H 0.07 2.64 6.91 -2.39 -0.02 2.62 16 10 C 0.14 5.32 5.84 86.38 0.50 5.82 16 11 N -0.74 -37.11 5.43 -343.44 -1.87 -38.98 16 12 C -0.24 -13.46 9.99 84.03 0.84 -12.62 16 13 H 0.07 3.95 7.83 -2.91 -0.02 3.93 16 14 C -0.07 -4.04 5.50 84.86 0.47 -3.57 16 15 N -0.96 -58.60 13.06 21.65 0.28 -58.31 16 16 Si 0.97 46.17 29.55 68.60 2.03 48.20 16 17 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 18 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 19 H -0.30 -14.41 7.11 99.48 0.71 -13.70 16 20 C -0.09 -2.06 2.82 -10.07 -0.03 -2.09 16 21 C -0.12 -2.23 5.12 31.67 0.16 -2.07 16 22 C -0.12 -1.75 6.91 31.89 0.22 -1.53 16 23 C -0.12 -1.90 6.83 31.67 0.22 -1.69 16 24 C -0.11 -2.36 6.19 31.32 0.19 -2.16 16 25 N -0.44 -11.36 2.62 -502.00 -1.31 -12.67 16 26 C -0.02 -0.53 11.39 83.21 0.95 0.42 16 27 C -0.22 -4.99 10.86 22.14 0.24 -4.75 16 28 C -0.22 -5.40 10.86 22.14 0.24 -5.16 16 29 C -0.03 -0.75 10.45 83.21 0.87 0.12 16 30 H 0.05 1.74 7.92 -2.39 -0.02 1.72 16 31 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 32 H 0.07 2.84 5.95 -2.39 -0.01 2.83 16 33 H 0.12 2.43 8.14 -2.39 -0.02 2.41 16 34 H 0.10 2.71 8.06 -2.39 -0.02 2.69 16 35 H 0.41 9.81 6.96 -92.71 -0.65 9.17 16 36 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.04 1.32 7.14 -2.39 -0.02 1.30 16 38 H 0.37 20.33 6.81 -92.70 -0.63 19.70 16 39 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 40 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 41 H 0.06 1.24 5.96 -2.39 -0.01 1.22 16 42 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 43 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 44 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 45 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 46 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 47 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 48 H 0.05 1.17 7.12 -2.39 -0.02 1.16 16 49 H 0.18 3.11 8.06 -2.91 -0.02 3.09 16 50 H 0.15 2.76 8.06 -2.91 -0.02 2.74 16 51 H 0.14 3.08 8.06 -2.91 -0.02 3.06 16 52 H 0.16 4.11 8.06 -2.91 -0.02 4.08 16 Total: -1.00 -68.56 407.78 3.53 -65.04 By element: Atomic # 1 Polarization: 51.88 SS G_CDS: -0.37 Total: 51.51 kcal Atomic # 6 Polarization: -17.39 SS G_CDS: 6.47 Total: -10.92 kcal Atomic # 7 Polarization: -126.94 SS G_CDS: -4.56 Total: -131.50 kcal Atomic # 8 Polarization: -22.29 SS G_CDS: -0.04 Total: -22.33 kcal Atomic # 14 Polarization: 46.17 SS G_CDS: 2.03 Total: 48.20 kcal Total: -68.56 3.53 -65.04 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724102224.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.751 kcal (2) G-P(sol) polarization free energy of solvation -68.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds