Wall clock time and date at job start Tue Mar 31 2020 17:31:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47459 * 2 1 4 4 C 1.52996 * 109.47328 * 120.00553 * 2 1 3 5 5 C 1.50705 * 109.46796 * 294.99336 * 4 2 1 6 6 O 1.21282 * 120.00130 * 0.02562 * 5 4 2 7 7 N 1.34773 * 120.00192 * 179.97438 * 5 4 2 8 8 C 1.46497 * 120.00533 * 184.90614 * 7 5 4 9 9 H 1.09008 * 109.46720 * 32.14250 * 8 7 5 10 10 C 1.52994 * 109.47265 * 152.14476 * 8 7 5 11 11 N 1.46507 * 109.47385 * 302.16805 * 10 8 7 12 12 C 1.36926 * 120.00135 * 180.02562 * 11 10 8 13 13 H 1.08000 * 120.00350 * 359.97438 * 12 11 10 14 14 C 1.38815 * 120.00127 * 180.02562 * 12 11 10 15 15 N 1.31626 * 119.99696 * 0.02562 * 14 12 11 16 16 Si 1.86795 * 120.00399 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.47010 * 60.00142 * 16 14 12 18 18 H 1.48499 * 109.47280 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.46986 * 300.00197 * 16 14 12 20 20 C 1.52999 * 109.47290 * 272.15018 * 8 7 5 21 21 C 1.54272 * 110.02777 * 299.38182 * 20 8 7 22 22 C 1.54890 * 104.19606 * 217.10511 * 21 20 8 23 23 C 1.54886 * 102.74900 * 37.94646 * 22 21 20 24 24 C 1.53872 * 110.03317 * 182.22390 * 20 8 7 25 25 N 1.46505 * 109.46807 * 240.00081 * 2 1 3 26 26 C 1.36342 * 125.63552 * 299.69442 * 25 2 1 27 27 C 1.34852 * 108.21764 * 179.83084 * 26 25 2 28 28 C 1.40894 * 107.41800 * 0.42362 * 27 26 25 29 29 C 1.34851 * 107.41494 * 359.73564 * 28 27 26 30 30 H 1.08992 * 109.47144 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46587 * 300.00207 * 1 2 3 32 32 H 1.09002 * 109.47268 * 59.99699 * 1 2 3 33 33 H 1.08999 * 109.47364 * 175.00112 * 4 2 1 34 34 H 1.08997 * 109.47469 * 54.99697 * 4 2 1 35 35 H 0.97010 * 119.99541 * 5.19155 * 7 5 4 36 36 H 1.08995 * 109.47764 * 62.17103 * 10 8 7 37 37 H 1.09011 * 109.47139 * 182.17477 * 10 8 7 38 38 H 0.97007 * 119.99396 * 0.02562 * 11 10 8 39 39 H 0.96996 * 119.99841 * 180.02562 * 15 14 12 40 40 H 1.08998 * 110.01892 * 60.82278 * 20 8 7 41 41 H 1.08992 * 110.49036 * 335.78690 * 21 20 8 42 42 H 1.09002 * 110.48532 * 98.42889 * 21 20 8 43 43 H 1.09000 * 110.75517 * 279.62726 * 22 21 20 44 44 H 1.09000 * 110.75226 * 156.26294 * 22 21 20 45 45 H 1.08996 * 110.48607 * 203.37966 * 23 22 21 46 46 H 1.09006 * 110.60057 * 80.78704 * 23 22 21 47 47 H 1.09007 * 110.03101 * 238.56195 * 24 20 8 48 48 H 1.08996 * 110.03503 * 359.94306 * 24 20 8 49 49 H 1.07999 * 125.89194 * 359.95532 * 26 25 2 50 50 H 1.08006 * 126.29422 * 180.15996 * 27 26 25 51 51 H 1.07997 * 126.29620 * 179.72968 * 28 27 26 52 52 H 1.08002 * 125.88943 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 1.6415 0.0570 2.4765 6 8 1.0111 1.0869 2.3633 7 7 1.9846 -0.3920 3.7001 8 6 1.5066 0.3049 4.8968 9 1 0.5237 0.7331 4.6995 10 6 1.4075 -0.6858 6.0584 11 7 0.5097 -1.7831 5.6893 12 6 0.2653 -2.7960 6.5777 13 1 0.7346 -2.7863 7.5503 14 6 -0.5849 -3.8360 6.2277 15 7 -1.1558 -3.8487 5.0418 16 14 -0.9179 -5.2183 7.4393 17 1 -1.5246 -4.6589 8.6739 18 1 -1.8518 -6.1979 6.8282 19 1 0.3585 -5.8971 7.7787 20 6 2.4858 1.4224 5.2616 21 6 3.8784 0.8287 5.5584 22 6 4.4190 1.6928 6.7247 23 6 3.1537 1.9376 7.5838 24 6 2.0251 2.1274 6.5493 25 7 2.0183 -0.6906 -1.1962 26 6 1.7655 -1.9902 -1.5220 27 6 2.3798 -2.2587 -2.6921 28 6 3.0440 -1.0846 -3.0989 29 6 2.8054 -0.1417 -2.1648 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3632 0.5139 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 3.1264 -0.7995 1.2055 34 1 1.6055 -1.7199 1.2950 35 1 2.5516 -1.1742 3.7883 36 1 2.3970 -1.0852 6.2809 37 1 1.0153 -0.1759 6.9384 38 1 0.0885 -1.7920 4.8155 39 1 -1.7502 -4.5752 4.7974 40 1 2.5520 2.1417 4.4452 41 1 3.7913 -0.2137 5.8645 42 1 4.5252 0.9182 4.6857 43 1 4.8218 2.6349 6.3529 44 1 5.1721 1.1469 7.2930 45 1 3.2716 2.8364 8.1890 46 1 2.9483 1.0756 8.2185 47 1 1.8685 3.1891 6.3582 48 1 1.1033 1.6741 6.9139 49 1 1.1736 -2.6843 -0.9438 50 1 2.3685 -3.2018 -3.2184 51 1 3.6355 -0.9622 -3.9941 52 1 3.1746 0.8732 -2.1809 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724102229.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:31:38 Heat of formation + Delta-G solvation = 8.395691 kcal Electronic energy + Delta-G solvation = -29545.324505 eV Core-core repulsion = 25738.212503 eV Total energy + Delta-G solvation = -3807.112002 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.75 seconds Orbital eigenvalues (eV) -41.24904 -39.99767 -38.38548 -35.45491 -34.81451 -33.62488 -31.37088 -30.08902 -29.46071 -28.70723 -28.60561 -27.78379 -26.18619 -23.57484 -22.74005 -21.88127 -20.82005 -20.45664 -20.14644 -19.35469 -18.87637 -17.62630 -17.20890 -16.49796 -16.14273 -15.56099 -15.35846 -14.92004 -14.61273 -14.57172 -14.13999 -13.79107 -13.76697 -13.54144 -13.29669 -13.10025 -12.93338 -12.63551 -12.51980 -12.25582 -12.13346 -12.04440 -11.80654 -11.53697 -11.36871 -11.20308 -11.11033 -11.01054 -10.97594 -10.93412 -10.86079 -10.71219 -10.44549 -10.25493 -9.95656 -9.79421 -9.63778 -8.93601 -8.70274 -8.58604 -8.11896 -7.00175 -5.83619 -3.13066 2.32286 2.74879 2.87067 3.09879 3.38888 3.43968 3.44779 3.52334 4.46703 4.51199 4.68525 4.71590 4.72202 4.82871 4.92310 5.05211 5.15405 5.28387 5.37412 5.38474 5.42445 5.47276 5.50788 5.54137 5.59081 5.59890 5.65654 5.72982 5.77434 5.82010 5.84288 5.91256 5.92112 5.98632 6.06565 6.13322 6.22809 6.24673 6.27974 6.31738 6.37646 6.44232 6.47677 6.51078 6.70910 6.89892 7.03781 7.29565 7.43249 7.62320 7.74651 8.34367 8.41146 9.46319 10.01938 10.37178 11.38643 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.007720 B = 0.003750 C = 0.002720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3625.863461 B = 7465.829838 C =10292.373042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.152 3.848 3 H 0.103 0.897 4 C -0.154 4.154 5 C 0.523 3.477 6 O -0.547 6.547 7 N -0.706 5.706 8 C 0.145 3.855 9 H 0.087 0.913 10 C 0.143 3.857 11 N -0.731 5.731 12 C -0.243 4.243 13 H 0.069 0.931 14 C -0.010 4.010 15 N -0.931 5.931 16 Si 0.907 3.093 17 H -0.286 1.286 18 H -0.291 1.291 19 H -0.286 1.286 20 C -0.096 4.096 21 C -0.123 4.123 22 C -0.123 4.123 23 C -0.123 4.123 24 C -0.121 4.121 25 N -0.441 5.441 26 C -0.009 4.009 27 C -0.208 4.208 28 C -0.206 4.206 29 C -0.018 4.018 30 H 0.061 0.939 31 H 0.097 0.903 32 H 0.058 0.942 33 H 0.096 0.904 34 H 0.105 0.895 35 H 0.403 0.597 36 H 0.028 0.972 37 H 0.036 0.964 38 H 0.385 0.615 39 H 0.256 0.744 40 H 0.072 0.928 41 H 0.077 0.923 42 H 0.057 0.943 43 H 0.061 0.939 44 H 0.062 0.938 45 H 0.059 0.941 46 H 0.068 0.932 47 H 0.059 0.941 48 H 0.073 0.927 49 H 0.159 0.841 50 H 0.132 0.868 51 H 0.131 0.869 52 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.728 10.231 -7.724 16.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.049 3.951 3 H 0.121 0.879 4 C -0.195 4.195 5 C 0.308 3.692 6 O -0.426 6.426 7 N -0.355 5.355 8 C 0.040 3.960 9 H 0.105 0.895 10 C 0.015 3.985 11 N -0.375 5.375 12 C -0.375 4.375 13 H 0.087 0.913 14 C -0.206 4.206 15 N -0.579 5.579 16 Si 0.737 3.263 17 H -0.213 1.213 18 H -0.217 1.217 19 H -0.213 1.213 20 C -0.117 4.117 21 C -0.161 4.161 22 C -0.161 4.161 23 C -0.161 4.161 24 C -0.159 4.159 25 N -0.117 5.117 26 C -0.139 4.139 27 C -0.232 4.232 28 C -0.231 4.231 29 C -0.148 4.148 30 H 0.080 0.920 31 H 0.116 0.884 32 H 0.077 0.923 33 H 0.115 0.885 34 H 0.123 0.877 35 H 0.238 0.762 36 H 0.046 0.954 37 H 0.054 0.946 38 H 0.219 0.781 39 H 0.066 0.934 40 H 0.090 0.910 41 H 0.095 0.905 42 H 0.076 0.924 43 H 0.079 0.921 44 H 0.081 0.919 45 H 0.078 0.922 46 H 0.087 0.913 47 H 0.078 0.922 48 H 0.092 0.908 49 H 0.177 0.823 50 H 0.149 0.851 51 H 0.149 0.851 52 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 10.109 11.022 -7.341 16.660 hybrid contribution -0.079 -1.314 0.375 1.369 sum 10.030 9.708 -6.966 15.600 Atomic orbital electron populations 1.22288 0.92621 1.03245 1.04260 1.21088 0.96190 0.96272 0.81513 0.87869 1.22015 1.03466 1.01476 0.92524 1.20141 0.79225 0.85237 0.84572 1.90656 1.40812 1.24446 1.86672 1.45908 1.52317 1.32121 1.05156 1.21298 0.97510 0.92491 0.84696 0.89451 1.21087 0.94526 0.88943 0.93930 1.42336 1.54057 1.23152 1.17999 1.19152 1.22597 0.99474 0.96230 0.91257 1.24727 0.99947 0.99004 0.96957 1.69648 1.34661 1.33810 1.19817 0.86285 0.77670 0.81982 0.80324 1.21257 1.21673 1.21267 1.22087 0.94912 0.96838 0.97823 1.22519 0.95474 1.00326 0.97731 1.22466 0.97310 0.99473 0.96834 1.22345 0.94800 1.01355 0.97570 1.22213 0.99180 0.99984 0.94526 1.44408 1.39008 1.10129 1.18106 1.21830 1.06416 0.86191 0.99492 1.20870 1.05047 0.99302 0.97989 1.20847 1.07025 0.94082 1.01165 1.21814 1.01495 0.99694 0.91818 0.92021 0.88443 0.92270 0.88534 0.87654 0.76196 0.95425 0.94646 0.78148 0.93435 0.90951 0.90478 0.92410 0.92059 0.91914 0.92190 0.91334 0.92178 0.90791 0.82338 0.85056 0.85142 0.82594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.11 8.98 37.16 0.33 -1.78 16 2 C 0.15 1.78 2.67 -67.93 -0.18 1.60 16 3 H 0.10 1.20 7.88 -51.93 -0.41 0.79 16 4 C -0.15 -1.82 5.16 -27.88 -0.14 -1.96 16 5 C 0.52 7.51 7.53 -10.98 -0.08 7.43 16 6 O -0.55 -9.19 13.63 5.56 0.08 -9.11 16 7 N -0.71 -10.18 4.25 -53.81 -0.23 -10.41 16 8 C 0.14 2.26 1.82 -67.94 -0.12 2.13 16 9 H 0.09 1.58 7.56 -51.92 -0.39 1.19 16 10 C 0.14 2.61 5.27 -4.04 -0.02 2.59 16 11 N -0.73 -17.27 5.46 -59.91 -0.33 -17.60 16 12 C -0.24 -6.49 9.99 -15.06 -0.15 -6.64 16 13 H 0.07 1.80 7.83 -52.49 -0.41 1.38 16 14 C -0.01 -0.28 5.50 -17.43 -0.10 -0.37 16 15 N -0.93 -27.17 13.06 55.49 0.72 -26.45 16 16 Si 0.91 21.79 29.55 -169.99 -5.02 16.77 16 17 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 18 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 19 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 20 C -0.10 -1.26 2.99 -89.50 -0.27 -1.53 16 21 C -0.12 -1.44 5.83 -25.07 -0.15 -1.59 16 22 C -0.12 -1.29 6.91 -24.74 -0.17 -1.46 16 23 C -0.12 -1.36 6.83 -25.07 -0.17 -1.53 16 24 C -0.12 -1.49 5.93 -25.61 -0.15 -1.64 16 25 N -0.44 -5.26 2.62 -110.02 -0.29 -5.55 16 26 C -0.01 -0.11 10.45 -16.75 -0.18 -0.29 16 27 C -0.21 -2.52 10.86 -39.78 -0.43 -2.95 16 28 C -0.21 -2.41 10.86 -39.78 -0.43 -2.84 16 29 C -0.02 -0.21 11.39 -16.75 -0.19 -0.40 16 30 H 0.06 0.79 7.92 -51.93 -0.41 0.38 16 31 H 0.10 1.42 5.95 -51.93 -0.31 1.11 16 32 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.11 1.28 8.05 -51.93 -0.42 0.86 16 35 H 0.40 5.53 8.64 -40.82 -0.35 5.18 16 36 H 0.03 0.50 5.98 -51.93 -0.31 0.19 16 37 H 0.04 0.67 6.41 -51.92 -0.33 0.33 16 38 H 0.38 9.73 7.43 -40.82 -0.30 9.43 16 39 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 40 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.08 0.98 5.68 -51.93 -0.29 0.68 16 42 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 46 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 47 H 0.06 0.69 8.14 -51.92 -0.42 0.26 16 48 H 0.07 1.00 6.18 -51.93 -0.32 0.68 16 49 H 0.16 1.77 8.06 -52.49 -0.42 1.35 16 50 H 0.13 1.39 8.06 -52.48 -0.42 0.97 16 51 H 0.13 1.28 8.06 -52.49 -0.42 0.85 16 52 H 0.16 1.41 8.06 -52.49 -0.42 0.98 16 LS Contribution 408.19 15.07 6.15 6.15 Total: -1.00 -30.26 408.19 -10.42 -40.68 By element: Atomic # 1 Polarization: 25.63 SS G_CDS: -8.90 Total: 16.74 kcal Atomic # 6 Polarization: -8.62 SS G_CDS: -2.60 Total: -11.23 kcal Atomic # 7 Polarization: -59.88 SS G_CDS: -0.12 Total: -59.99 kcal Atomic # 8 Polarization: -9.19 SS G_CDS: 0.08 Total: -9.11 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -30.26 -10.42 -40.68 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724102229.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.071 kcal (2) G-P(sol) polarization free energy of solvation -30.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.675 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.75 seconds