Wall clock time and date at job start Tue Mar 31 2020 17:31:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47459 * 2 1 4 4 C 1.52996 * 109.47328 * 120.00553 * 2 1 3 5 5 C 1.50705 * 109.46796 * 294.99336 * 4 2 1 6 6 O 1.21282 * 120.00130 * 0.02562 * 5 4 2 7 7 N 1.34773 * 120.00192 * 179.97438 * 5 4 2 8 8 C 1.46497 * 120.00533 * 184.90614 * 7 5 4 9 9 H 1.09008 * 109.46720 * 32.14250 * 8 7 5 10 10 C 1.52994 * 109.47265 * 152.14476 * 8 7 5 11 11 N 1.46507 * 109.47385 * 302.16805 * 10 8 7 12 12 C 1.36926 * 120.00135 * 180.02562 * 11 10 8 13 13 H 1.08000 * 120.00350 * 359.97438 * 12 11 10 14 14 C 1.38815 * 120.00127 * 180.02562 * 12 11 10 15 15 N 1.31626 * 119.99696 * 0.02562 * 14 12 11 16 16 Si 1.86795 * 120.00399 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.47010 * 60.00142 * 16 14 12 18 18 H 1.48499 * 109.47280 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.46986 * 300.00197 * 16 14 12 20 20 C 1.52999 * 109.47290 * 272.15018 * 8 7 5 21 21 C 1.54272 * 110.02777 * 299.38182 * 20 8 7 22 22 C 1.54890 * 104.19606 * 217.10511 * 21 20 8 23 23 C 1.54886 * 102.74900 * 37.94646 * 22 21 20 24 24 C 1.53872 * 110.03317 * 182.22390 * 20 8 7 25 25 N 1.46505 * 109.46807 * 240.00081 * 2 1 3 26 26 C 1.36342 * 125.63552 * 299.69442 * 25 2 1 27 27 C 1.34852 * 108.21764 * 179.83084 * 26 25 2 28 28 C 1.40894 * 107.41800 * 0.42362 * 27 26 25 29 29 C 1.34851 * 107.41494 * 359.73564 * 28 27 26 30 30 H 1.08992 * 109.47144 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46587 * 300.00207 * 1 2 3 32 32 H 1.09002 * 109.47268 * 59.99699 * 1 2 3 33 33 H 1.08999 * 109.47364 * 175.00112 * 4 2 1 34 34 H 1.08997 * 109.47469 * 54.99697 * 4 2 1 35 35 H 0.97010 * 119.99541 * 5.19155 * 7 5 4 36 36 H 1.08995 * 109.47764 * 62.17103 * 10 8 7 37 37 H 1.09011 * 109.47139 * 182.17477 * 10 8 7 38 38 H 0.97007 * 119.99396 * 0.02562 * 11 10 8 39 39 H 0.96996 * 119.99841 * 180.02562 * 15 14 12 40 40 H 1.08998 * 110.01892 * 60.82278 * 20 8 7 41 41 H 1.08992 * 110.49036 * 335.78690 * 21 20 8 42 42 H 1.09002 * 110.48532 * 98.42889 * 21 20 8 43 43 H 1.09000 * 110.75517 * 279.62726 * 22 21 20 44 44 H 1.09000 * 110.75226 * 156.26294 * 22 21 20 45 45 H 1.08996 * 110.48607 * 203.37966 * 23 22 21 46 46 H 1.09006 * 110.60057 * 80.78704 * 23 22 21 47 47 H 1.09007 * 110.03101 * 238.56195 * 24 20 8 48 48 H 1.08996 * 110.03503 * 359.94306 * 24 20 8 49 49 H 1.07999 * 125.89194 * 359.95532 * 26 25 2 50 50 H 1.08006 * 126.29422 * 180.15996 * 27 26 25 51 51 H 1.07997 * 126.29620 * 179.72968 * 28 27 26 52 52 H 1.08002 * 125.88943 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 1.6415 0.0570 2.4765 6 8 1.0111 1.0869 2.3633 7 7 1.9846 -0.3920 3.7001 8 6 1.5066 0.3049 4.8968 9 1 0.5237 0.7331 4.6995 10 6 1.4075 -0.6858 6.0584 11 7 0.5097 -1.7831 5.6893 12 6 0.2653 -2.7960 6.5777 13 1 0.7346 -2.7863 7.5503 14 6 -0.5849 -3.8360 6.2277 15 7 -1.1558 -3.8487 5.0418 16 14 -0.9179 -5.2183 7.4393 17 1 -1.5246 -4.6589 8.6739 18 1 -1.8518 -6.1979 6.8282 19 1 0.3585 -5.8971 7.7787 20 6 2.4858 1.4224 5.2616 21 6 3.8784 0.8287 5.5584 22 6 4.4190 1.6928 6.7247 23 6 3.1537 1.9376 7.5838 24 6 2.0251 2.1274 6.5493 25 7 2.0183 -0.6906 -1.1962 26 6 1.7655 -1.9902 -1.5220 27 6 2.3798 -2.2587 -2.6921 28 6 3.0440 -1.0846 -3.0989 29 6 2.8054 -0.1417 -2.1648 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3632 0.5139 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 3.1264 -0.7995 1.2055 34 1 1.6055 -1.7199 1.2950 35 1 2.5516 -1.1742 3.7883 36 1 2.3970 -1.0852 6.2809 37 1 1.0153 -0.1759 6.9384 38 1 0.0885 -1.7920 4.8155 39 1 -1.7502 -4.5752 4.7974 40 1 2.5520 2.1417 4.4452 41 1 3.7913 -0.2137 5.8645 42 1 4.5252 0.9182 4.6857 43 1 4.8218 2.6349 6.3529 44 1 5.1721 1.1469 7.2930 45 1 3.2716 2.8364 8.1890 46 1 2.9483 1.0756 8.2185 47 1 1.8685 3.1891 6.3582 48 1 1.1033 1.6741 6.9139 49 1 1.1736 -2.6843 -0.9438 50 1 2.3685 -3.2018 -3.2184 51 1 3.6355 -0.9622 -3.9941 52 1 3.1746 0.8732 -2.1809 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724102229.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:31:35 Heat of formation + Delta-G solvation = -7.239076 kcal Electronic energy + Delta-G solvation = -29546.002479 eV Core-core repulsion = 25738.212503 eV Total energy + Delta-G solvation = -3807.789976 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.98 seconds Orbital eigenvalues (eV) -42.17664 -41.17040 -39.48865 -36.79477 -35.97579 -35.19002 -33.05564 -31.41222 -30.49387 -29.60522 -29.54496 -28.81524 -27.75188 -25.15187 -23.99655 -23.17413 -21.87084 -21.36072 -21.13788 -20.30683 -20.08271 -19.10627 -18.61753 -17.72811 -17.29940 -16.64690 -16.60258 -16.27888 -15.94790 -15.60473 -15.33267 -15.16525 -15.03206 -14.75319 -14.47881 -14.34095 -14.09421 -13.89763 -13.60762 -13.51254 -13.12100 -13.06728 -12.94041 -12.87057 -12.73415 -12.65534 -12.36806 -12.21149 -12.16429 -12.10803 -11.90395 -11.87327 -11.83925 -11.76856 -11.39407 -11.19780 -10.91401 -10.80552 -9.93939 -9.50673 -9.02113 -8.98074 -7.94167 -5.22768 1.40837 1.48304 1.49949 1.56068 1.59819 1.86419 2.19806 2.41464 2.56154 3.40199 3.48380 3.61866 3.66967 3.74781 3.78981 3.90522 4.05970 4.14564 4.20291 4.23142 4.35307 4.42944 4.45913 4.50840 4.53638 4.62392 4.68151 4.70414 4.73606 4.76164 4.83603 4.86825 4.87536 4.93533 4.94636 5.11430 5.13498 5.17282 5.18660 5.29880 5.37241 5.44135 5.48637 5.49262 5.50466 5.55486 5.64736 6.15005 6.26638 6.39189 6.52922 6.56533 7.23637 7.34449 8.08116 8.32006 9.28476 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.007720 B = 0.003750 C = 0.002720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3625.863461 B = 7465.829838 C =10292.373042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.159 3.841 3 H 0.109 0.891 4 C -0.143 4.143 5 C 0.522 3.478 6 O -0.572 6.572 7 N -0.704 5.704 8 C 0.156 3.844 9 H 0.058 0.942 10 C 0.148 3.852 11 N -0.741 5.741 12 C -0.244 4.244 13 H 0.076 0.924 14 C -0.069 4.069 15 N -0.966 5.966 16 Si 0.968 3.032 17 H -0.281 1.281 18 H -0.298 1.298 19 H -0.276 1.276 20 C -0.088 4.088 21 C -0.119 4.119 22 C -0.118 4.118 23 C -0.121 4.121 24 C -0.123 4.123 25 N -0.443 5.443 26 C -0.026 4.026 27 C -0.219 4.219 28 C -0.218 4.218 29 C -0.023 4.023 30 H 0.055 0.945 31 H 0.076 0.924 32 H 0.064 0.936 33 H 0.117 0.883 34 H 0.102 0.898 35 H 0.408 0.592 36 H 0.042 0.958 37 H 0.035 0.965 38 H 0.373 0.627 39 H 0.250 0.750 40 H 0.067 0.933 41 H 0.067 0.933 42 H 0.067 0.933 43 H 0.073 0.927 44 H 0.073 0.927 45 H 0.076 0.924 46 H 0.059 0.941 47 H 0.069 0.931 48 H 0.056 0.944 49 H 0.162 0.838 50 H 0.142 0.858 51 H 0.147 0.853 52 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.757 10.784 -7.380 18.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.056 3.944 3 H 0.127 0.873 4 C -0.184 4.184 5 C 0.308 3.692 6 O -0.453 6.453 7 N -0.353 5.353 8 C 0.051 3.949 9 H 0.076 0.924 10 C 0.021 3.979 11 N -0.384 5.384 12 C -0.376 4.376 13 H 0.094 0.906 14 C -0.262 4.262 15 N -0.616 5.616 16 Si 0.798 3.202 17 H -0.207 1.207 18 H -0.225 1.225 19 H -0.202 1.202 20 C -0.108 4.108 21 C -0.157 4.157 22 C -0.155 4.155 23 C -0.159 4.159 24 C -0.161 4.161 25 N -0.119 5.119 26 C -0.156 4.156 27 C -0.244 4.244 28 C -0.243 4.243 29 C -0.152 4.152 30 H 0.074 0.926 31 H 0.095 0.905 32 H 0.083 0.917 33 H 0.135 0.865 34 H 0.120 0.880 35 H 0.244 0.756 36 H 0.059 0.941 37 H 0.052 0.948 38 H 0.205 0.795 39 H 0.058 0.942 40 H 0.085 0.915 41 H 0.085 0.915 42 H 0.085 0.915 43 H 0.091 0.909 44 H 0.092 0.908 45 H 0.094 0.906 46 H 0.078 0.922 47 H 0.088 0.912 48 H 0.075 0.925 49 H 0.180 0.820 50 H 0.159 0.841 51 H 0.165 0.835 52 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 12.179 11.590 -6.971 18.201 hybrid contribution -0.707 -1.419 0.259 1.606 sum 11.472 10.171 -6.712 16.737 Atomic orbital electron populations 1.22189 0.93601 1.02610 1.03466 1.20966 0.95328 0.96504 0.81557 0.87329 1.21938 1.04642 1.00609 0.91171 1.20542 0.78539 0.85014 0.85067 1.90648 1.41855 1.25736 1.87023 1.45873 1.52257 1.32225 1.04989 1.21049 0.97134 0.92466 0.84253 0.92410 1.21177 0.93793 0.88003 0.94902 1.42498 1.54806 1.23956 1.17150 1.19552 1.21573 0.99751 0.96684 0.90575 1.25473 1.00582 1.01549 0.98584 1.69804 1.35776 1.34431 1.21624 0.85292 0.77516 0.79132 0.78280 1.20743 1.22479 1.20229 1.21994 0.95121 0.95661 0.98003 1.22475 0.94558 0.99824 0.98799 1.22461 0.97133 0.99854 0.96076 1.22339 0.94439 1.01808 0.97284 1.22228 0.99028 1.00300 0.94518 1.44407 1.39258 1.10049 1.18175 1.22019 1.07021 0.86602 0.99985 1.21155 1.05019 1.00106 0.98070 1.21153 1.07260 0.93930 1.01923 1.22275 1.00909 1.00732 0.91325 0.92569 0.90500 0.91687 0.86496 0.87984 0.75634 0.94080 0.94758 0.79460 0.94154 0.91497 0.91459 0.91452 0.90878 0.90819 0.90565 0.92179 0.91221 0.92496 0.82038 0.84066 0.83502 0.80328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.13 8.98 71.98 0.65 -3.48 16 2 C 0.16 3.63 2.67 44.99 0.12 3.75 16 3 H 0.11 2.39 7.88 -2.39 -0.02 2.38 16 4 C -0.14 -3.29 5.16 29.85 0.15 -3.13 16 5 C 0.52 14.99 7.53 87.66 0.66 15.65 16 6 O -0.57 -19.49 13.63 -3.04 -0.04 -19.53 16 7 N -0.70 -20.27 4.25 -442.54 -1.88 -22.15 16 8 C 0.16 4.91 1.82 44.99 0.08 4.99 16 9 H 0.06 2.18 7.56 -2.38 -0.02 2.16 16 10 C 0.15 5.38 5.27 86.38 0.46 5.84 16 11 N -0.74 -35.38 5.46 -343.45 -1.87 -37.25 16 12 C -0.24 -12.98 9.99 84.04 0.84 -12.14 16 13 H 0.08 3.88 7.83 -2.91 -0.02 3.85 16 14 C -0.07 -3.84 5.50 84.86 0.47 -3.37 16 15 N -0.97 -57.35 13.06 21.65 0.28 -57.07 16 16 Si 0.97 44.87 29.55 68.60 2.03 46.90 16 17 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 18 H -0.30 -14.08 7.11 99.48 0.71 -13.37 16 19 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 20 C -0.09 -2.22 2.99 -10.07 -0.03 -2.25 16 21 C -0.12 -2.56 5.83 31.67 0.18 -2.37 16 22 C -0.12 -2.15 6.91 31.88 0.22 -1.93 16 23 C -0.12 -2.42 6.83 31.67 0.22 -2.21 16 24 C -0.12 -2.89 5.93 31.32 0.19 -2.71 16 25 N -0.44 -10.06 2.62 -501.99 -1.31 -11.38 16 26 C -0.03 -0.63 10.45 83.21 0.87 0.24 16 27 C -0.22 -5.09 10.86 22.14 0.24 -4.85 16 28 C -0.22 -4.73 10.86 22.14 0.24 -4.49 16 29 C -0.02 -0.48 11.39 83.21 0.95 0.47 16 30 H 0.06 1.47 7.92 -2.39 -0.02 1.45 16 31 H 0.08 2.31 5.95 -2.39 -0.01 2.30 16 32 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.12 2.22 8.14 -2.39 -0.02 2.20 16 34 H 0.10 2.46 8.05 -2.39 -0.02 2.44 16 35 H 0.41 11.00 8.64 -92.70 -0.80 10.20 16 36 H 0.04 1.43 5.98 -2.39 -0.01 1.42 16 37 H 0.03 1.29 6.41 -2.38 -0.02 1.27 16 38 H 0.37 19.36 7.43 -92.70 -0.69 18.68 16 39 H 0.25 14.54 8.31 -92.71 -0.77 13.77 16 40 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 41 H 0.07 1.58 5.68 -2.39 -0.01 1.57 16 42 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 43 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 44 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 45 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 46 H 0.06 1.30 8.14 -2.38 -0.02 1.29 16 47 H 0.07 1.50 8.14 -2.38 -0.02 1.49 16 48 H 0.06 1.53 6.18 -2.39 -0.01 1.52 16 49 H 0.16 3.62 8.06 -2.91 -0.02 3.59 16 50 H 0.14 2.86 8.06 -2.91 -0.02 2.84 16 51 H 0.15 2.59 8.06 -2.91 -0.02 2.56 16 52 H 0.18 2.78 8.06 -2.91 -0.02 2.76 16 Total: -1.00 -64.47 408.19 3.12 -61.35 By element: Atomic # 1 Polarization: 51.71 SS G_CDS: -0.58 Total: 51.13 kcal Atomic # 6 Polarization: -18.50 SS G_CDS: 6.50 Total: -12.00 kcal Atomic # 7 Polarization: -123.06 SS G_CDS: -4.79 Total: -127.85 kcal Atomic # 8 Polarization: -19.49 SS G_CDS: -0.04 Total: -19.53 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Total: -64.47 3.12 -61.35 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724102229.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.112 kcal (2) G-P(sol) polarization free energy of solvation -64.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.98 seconds